Wall clock time and date at job start Mon Mar 30 2020 05:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86793 * 120.00262 * 2 1 4 4 H 1.48494 * 109.47480 * 269.99942 * 3 2 1 5 5 H 1.48502 * 109.47337 * 30.00341 * 3 2 1 6 6 H 1.48508 * 109.47239 * 149.99799 * 3 2 1 7 7 C 1.38951 * 119.99733 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00065 * 179.97438 * 7 2 1 9 9 N 1.37101 * 119.99696 * 0.02562 * 7 2 1 10 10 C 1.34780 * 119.99684 * 179.97438 * 9 7 2 11 11 O 1.21292 * 120.00124 * 359.97438 * 10 9 7 12 12 C 1.50694 * 120.00201 * 180.02562 * 10 9 7 13 13 N 1.46893 * 109.47601 * 173.73174 * 12 10 9 14 14 C 1.46842 * 111.00393 * 169.40084 * 13 12 10 15 15 C 1.53034 * 109.52656 * 185.84074 * 14 13 12 16 16 C 1.53120 * 109.27740 * 300.81927 * 15 14 13 17 17 C 1.53116 * 109.16153 * 57.65336 * 16 15 14 18 18 H 1.08998 * 109.53755 * 62.30938 * 17 16 15 19 19 C 1.53002 * 109.50490 * 182.40797 * 17 16 15 20 20 C 1.53002 * 109.46787 * 294.80362 * 19 17 16 21 21 N 1.46907 * 109.46915 * 179.97438 * 20 19 17 22 22 C 1.46848 * 111.00032 * 293.60937 * 13 12 10 23 23 H 0.97002 * 119.99731 * 359.97438 * 1 2 3 24 24 H 0.96992 * 120.00592 * 0.02562 * 9 7 2 25 25 H 1.09004 * 109.47209 * 293.73311 * 12 10 9 26 26 H 1.09005 * 109.47439 * 53.72623 * 12 10 9 27 27 H 1.09000 * 109.45984 * 305.85365 * 14 13 12 28 28 H 1.08999 * 109.46611 * 65.82197 * 14 13 12 29 29 H 1.09005 * 109.50887 * 180.87548 * 15 14 13 30 30 H 1.09005 * 109.50842 * 60.75665 * 15 14 13 31 31 H 1.08997 * 109.52090 * 297.74759 * 16 15 14 32 32 H 1.09005 * 109.52387 * 177.56031 * 16 15 14 33 33 H 1.08999 * 109.46861 * 54.79757 * 19 17 16 34 34 H 1.08993 * 109.47406 * 174.80248 * 19 17 16 35 35 H 1.08999 * 109.46926 * 299.99355 * 20 19 17 36 36 H 1.09002 * 109.47447 * 59.99874 * 20 19 17 37 37 H 1.00899 * 110.99465 * 179.97438 * 21 20 19 38 38 H 1.00897 * 110.99715 * 303.95468 * 21 20 19 39 39 H 1.09004 * 109.46056 * 294.17411 * 22 13 12 40 40 H 1.09005 * 109.46287 * 54.14994 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4457 2.6526 0.7001 6 1 3.5458 1.4400 0.7001 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3232 -2.3906 -0.0016 10 6 1.9971 -3.5579 -0.0026 11 8 3.2100 -3.5580 -0.0031 12 6 1.2436 -4.8629 -0.0044 13 7 2.1909 -5.9752 -0.1565 14 6 1.5321 -7.2647 0.0873 15 6 2.5751 -8.3844 0.0641 16 6 3.2735 -8.3965 -1.2985 17 6 3.9101 -7.0267 -1.5491 18 1 4.6680 -6.8326 -0.7901 19 6 4.5590 -7.0108 -2.9346 20 6 5.7223 -8.0042 -2.9644 21 7 6.3450 -7.9893 -4.2949 22 6 2.8284 -5.9464 -1.4790 23 1 -0.4850 0.8401 0.0004 24 1 0.3533 -2.3906 -0.0024 25 1 0.7033 -4.9719 0.9361 26 1 0.5356 -4.8727 -0.8332 27 1 1.0430 -7.2442 1.0612 28 1 0.7883 -7.4451 -0.6887 29 1 2.0836 -9.3432 0.2297 30 1 3.3116 -8.2121 0.8490 31 1 2.5436 -8.6075 -2.0800 32 1 4.0472 -9.1644 -1.3045 33 1 3.8206 -7.2935 -3.6849 34 1 4.9310 -6.0092 -3.1501 35 1 6.4607 -7.7215 -2.2141 36 1 5.3504 -9.0059 -2.7488 37 1 7.1169 -8.6374 -4.3400 38 1 5.6653 -8.1853 -5.0143 39 1 2.0785 -6.1330 -2.2478 40 1 3.2810 -4.9684 -1.6429 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069724211.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:25 Heat of formation + Delta-G solvation = -74.275685 kcal Electronic energy + Delta-G solvation = -19355.796911 eV Core-core repulsion = 16396.391287 eV Total energy + Delta-G solvation = -2959.405624 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.169 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.75065 -39.41939 -36.79666 -35.91199 -34.21540 -33.23166 -32.51013 -29.13554 -28.14690 -26.49635 -24.32106 -23.67929 -21.90398 -20.95525 -20.61894 -19.85982 -17.74018 -16.99569 -16.59828 -16.55410 -16.38615 -16.02301 -15.74567 -15.36287 -15.06278 -14.93826 -14.51554 -14.17487 -13.73603 -13.69603 -13.38960 -13.13162 -12.90712 -12.79625 -12.42387 -12.33633 -12.23418 -12.12061 -11.83435 -11.54203 -11.49990 -11.19997 -11.13158 -10.25757 -9.99472 -9.56408 -9.15974 -8.46382 -5.94986 1.37628 1.40993 1.54043 2.06143 2.28759 2.77402 3.20273 3.33686 3.69446 3.80003 3.90270 4.05615 4.13752 4.30245 4.32652 4.38168 4.42086 4.53420 4.56303 4.62989 4.69351 4.72173 4.85877 4.90924 5.01732 5.06398 5.12787 5.20394 5.31116 5.40901 5.45038 5.55524 5.92305 6.12482 6.24925 6.30391 6.61640 6.62785 7.13601 7.57056 8.13572 8.71252 Molecular weight = 255.17amu Principal moments of inertia in cm(-1) A = 0.024803 B = 0.004614 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.621281 B = 6066.443372 C = 6945.335614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.013 4.013 3 Si 0.992 3.008 4 H -0.271 1.271 5 H -0.269 1.269 6 H -0.274 1.274 7 C -0.333 4.333 8 H 0.077 0.923 9 N -0.575 5.575 10 C 0.440 3.560 11 O -0.614 6.614 12 C 0.058 3.942 13 N -0.536 5.536 14 C 0.052 3.948 15 C -0.112 4.112 16 C -0.108 4.108 17 C -0.073 4.073 18 H 0.057 0.943 19 C -0.106 4.106 20 C 0.069 3.931 21 N -0.865 5.865 22 C 0.066 3.934 23 H 0.277 0.723 24 H 0.395 0.605 25 H 0.110 0.890 26 H 0.062 0.938 27 H 0.082 0.918 28 H 0.040 0.960 29 H 0.093 0.907 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.043 0.957 35 H 0.060 0.940 36 H 0.047 0.953 37 H 0.351 0.649 38 H 0.347 0.653 39 H 0.029 0.971 40 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.143 -18.714 -4.450 19.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.212 4.212 3 Si 0.816 3.184 4 H -0.197 1.197 5 H -0.194 1.194 6 H -0.199 1.199 7 C -0.462 4.462 8 H 0.095 0.905 9 N -0.213 5.213 10 C 0.227 3.773 11 O -0.499 6.499 12 C -0.073 4.073 13 N -0.261 5.261 14 C -0.075 4.075 15 C -0.150 4.150 16 C -0.146 4.146 17 C -0.093 4.093 18 H 0.076 0.924 19 C -0.144 4.144 20 C -0.062 4.062 21 N -0.396 5.396 22 C -0.062 4.062 23 H 0.087 0.913 24 H 0.229 0.771 25 H 0.128 0.872 26 H 0.080 0.920 27 H 0.100 0.900 28 H 0.058 0.942 29 H 0.112 0.888 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.062 0.938 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.164 0.836 38 H 0.160 0.840 39 H 0.047 0.953 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.337 -17.748 -3.925 18.481 hybrid contribution -1.079 0.284 -0.548 1.243 sum 2.259 -17.464 -4.473 18.169 Atomic orbital electron populations 1.69676 1.06820 1.29255 1.50515 1.26023 0.96538 1.02340 0.96311 0.84938 0.77889 0.76924 0.78646 1.19650 1.19397 1.19850 1.19650 0.92632 0.84057 1.49869 0.90481 1.41944 1.09249 1.04697 1.65428 1.20814 0.88347 0.85952 0.82144 1.90481 1.15716 1.87811 1.55917 1.21725 0.93437 0.88830 1.03355 1.61448 1.31464 1.02272 1.30873 1.22256 0.95974 0.87898 1.01393 1.21583 0.97977 0.97755 0.97660 1.21663 0.99963 0.95567 0.97385 1.21026 0.96363 0.94973 0.96889 0.92419 1.21478 0.97304 0.99453 0.96192 1.21727 0.95602 0.97673 0.91203 1.58627 1.15021 1.60936 1.05058 1.22071 0.96355 0.99575 0.88195 0.91311 0.77093 0.87158 0.92004 0.89960 0.94177 0.88847 0.92218 0.91477 0.90119 0.91375 0.93794 0.92098 0.93476 0.83563 0.84029 0.95331 0.93390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.67 13.05 21.66 0.28 -50.39 16 2 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 3 Si 0.99 43.91 29.55 68.60 2.03 45.93 16 4 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 6 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 7 C -0.33 -19.41 9.68 84.04 0.81 -18.60 16 8 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 9 N -0.58 -30.54 5.29 -306.98 -1.62 -32.16 16 10 C 0.44 21.88 7.31 87.65 0.64 22.52 16 11 O -0.61 -35.32 14.28 -3.07 -0.04 -35.36 16 12 C 0.06 2.12 5.45 85.56 0.47 2.58 16 13 N -0.54 -18.24 4.35 -900.95 -3.92 -22.15 16 14 C 0.05 1.26 5.46 86.33 0.47 1.73 16 15 C -0.11 -2.25 6.09 30.65 0.19 -2.06 16 16 C -0.11 -2.14 4.98 30.67 0.15 -1.98 16 17 C -0.07 -1.98 2.35 -10.74 -0.03 -2.00 16 18 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 19 C -0.11 -2.58 4.95 30.60 0.15 -2.42 16 20 C 0.07 1.35 6.55 86.30 0.56 1.91 16 21 N -0.86 -15.49 9.62 -186.70 -1.80 -17.29 16 22 C 0.07 2.25 4.40 86.33 0.38 2.63 16 23 H 0.28 14.25 8.31 -92.71 -0.77 13.48 16 24 H 0.40 19.90 7.90 -92.71 -0.73 19.17 16 25 H 0.11 3.55 7.98 -2.38 -0.02 3.53 16 26 H 0.06 2.06 8.12 -2.38 -0.02 2.04 16 27 H 0.08 1.83 8.01 -2.39 -0.02 1.81 16 28 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 30 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 31 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.08 1.30 6.70 -2.38 -0.02 1.28 16 33 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.05 0.74 6.63 -2.39 -0.02 0.73 16 37 H 0.35 4.78 9.08 -89.69 -0.81 3.97 16 38 H 0.35 5.20 8.99 -89.70 -0.81 4.39 16 39 H 0.03 0.90 8.14 -2.38 -0.02 0.88 16 40 H 0.05 2.10 6.06 -2.38 -0.01 2.09 16 Total: -1.00 -69.39 318.38 -2.10 -71.49 By element: Atomic # 1 Polarization: 37.14 SS G_CDS: -1.30 Total: 35.84 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: 4.27 Total: 4.10 kcal Atomic # 7 Polarization: -114.94 SS G_CDS: -7.05 Total: -122.00 kcal Atomic # 8 Polarization: -35.32 SS G_CDS: -0.04 Total: -35.36 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Total: -69.39 -2.10 -71.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069724211.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.787 kcal (2) G-P(sol) polarization free energy of solvation -69.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds