Wall clock time and date at job start Mon Mar 30 2020 04:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.45195 * 109.47046 * 2 1 4 4 C 1.34227 * 117.00206 * 179.97438 * 3 2 1 5 5 O 1.20831 * 119.99526 * 359.97438 * 4 3 2 6 6 C 1.50700 * 120.00206 * 179.97438 * 4 3 2 7 7 H 1.08996 * 109.47384 * 60.00261 * 6 4 3 8 8 C 1.52997 * 109.46866 * 299.99674 * 6 4 3 9 9 N 1.46498 * 109.46939 * 179.97438 * 6 4 3 10 10 C 1.36940 * 120.00193 * 58.97781 * 9 6 4 11 11 H 1.08000 * 119.99895 * 234.56860 * 10 9 6 12 12 C 1.38806 * 119.99968 * 54.56964 * 10 9 6 13 13 N 1.31626 * 120.00233 * 36.24404 * 12 10 9 14 14 Si 1.86802 * 120.00033 * 216.24320 * 12 10 9 15 15 H 1.48498 * 109.47266 * 59.99907 * 14 12 10 16 16 H 1.48497 * 109.47151 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47022 * 300.00153 * 14 12 10 18 18 C 1.46500 * 119.99872 * 238.97621 * 9 6 4 19 19 C 1.54265 * 110.03380 * 240.33449 * 18 9 6 20 20 C 1.54888 * 104.19899 * 217.10657 * 19 18 9 21 21 C 1.54891 * 102.74778 * 37.94287 * 20 19 18 22 22 C 1.53875 * 110.03183 * 123.16983 * 18 9 6 23 23 H 1.09002 * 109.46993 * 60.00425 * 1 2 3 24 24 H 1.08997 * 109.46911 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47390 * 300.00306 * 1 2 3 26 26 H 1.09000 * 109.47039 * 239.99612 * 2 1 3 27 27 H 1.08998 * 109.46860 * 120.00056 * 2 1 3 28 28 H 1.08998 * 109.47006 * 68.16554 * 8 6 4 29 29 H 1.08993 * 109.47461 * 308.15776 * 8 6 4 30 30 H 1.09011 * 109.46799 * 188.15894 * 8 6 4 31 31 H 0.96991 * 119.99828 * 184.79622 * 13 12 10 32 32 H 1.09002 * 110.01852 * 1.77938 * 18 9 6 33 33 H 1.08997 * 110.48795 * 335.78591 * 19 18 9 34 34 H 1.09010 * 110.48478 * 98.42854 * 19 18 9 35 35 H 1.09009 * 110.75453 * 279.62913 * 20 19 18 36 36 H 1.08995 * 110.91605 * 156.33074 * 20 19 18 37 37 H 1.09000 * 110.48286 * 203.38046 * 21 20 19 38 38 H 1.08996 * 110.48193 * 80.73638 * 21 20 19 39 39 H 1.08997 * 110.03287 * 238.56987 * 22 18 9 40 40 H 1.09003 * 110.03591 * 0.02562 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0808 0.5866 0.0015 6 6 3.9207 2.9374 0.0000 7 1 3.5844 3.4701 0.8895 8 6 3.4498 3.6835 -1.2500 9 7 5.3837 2.8607 0.0014 10 6 6.0364 2.2138 -1.0139 11 1 6.7353 1.4219 -0.7883 12 6 5.7998 2.5758 -2.3328 13 7 5.5910 3.8382 -2.6416 14 14 5.7778 1.2714 -3.6698 15 1 4.7147 0.2775 -3.3743 16 1 5.5053 1.9117 -4.9816 17 1 7.0953 0.5878 -3.7162 18 6 6.1484 3.4762 1.0888 19 6 7.0923 4.5581 0.5247 20 6 8.3731 4.4318 1.3864 21 6 8.4984 2.9015 1.5903 22 6 7.0424 2.4229 1.7664 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 2.3778 3.8680 -1.1806 29 1 3.6583 3.0803 -2.1334 30 1 3.9779 4.6342 -1.3262 31 1 5.3570 4.0828 -3.5505 32 1 5.4699 3.9160 1.8198 33 1 7.3167 4.3598 -0.5234 34 1 6.6506 5.5479 0.6406 35 1 8.2470 4.9399 2.3426 36 1 9.2403 4.8229 0.8544 37 1 9.0827 2.6823 2.4839 38 1 8.9497 2.4357 0.7143 39 1 6.7983 2.3521 2.8263 40 1 6.9076 1.4538 1.2858 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080215858.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:44 Heat of formation + Delta-G solvation = -66.009451 kcal Electronic energy + Delta-G solvation = -20660.109877 eV Core-core repulsion = 17668.769954 eV Total energy + Delta-G solvation = -2991.339924 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.52698 -37.66538 -35.77775 -34.47603 -31.62211 -31.18670 -29.60812 -27.70312 -26.40853 -24.10455 -23.45675 -21.92098 -19.83162 -19.68101 -19.08356 -16.71712 -16.46021 -15.84660 -15.25162 -14.99570 -14.56519 -14.24630 -13.61875 -13.46449 -12.89464 -12.57679 -12.51323 -12.30101 -11.94613 -11.59405 -11.35433 -11.18372 -10.99139 -10.91561 -10.71777 -10.47923 -10.29911 -10.22770 -10.12942 -10.10263 -10.03317 -9.86125 -9.71296 -9.45416 -9.11576 -7.89350 -6.56528 -5.79878 -3.47348 3.34431 3.37104 3.45490 3.51673 3.55413 4.51002 5.10341 5.21102 5.27613 5.30280 5.49375 5.56462 5.57398 5.66273 5.78583 6.01434 6.07800 6.09365 6.20889 6.21629 6.38012 6.41058 6.46413 6.59325 6.62468 6.68055 6.76199 6.83306 6.99383 7.09567 7.15562 7.31934 7.35396 7.65758 7.71812 7.93115 8.68395 8.85346 9.15653 9.69714 10.41172 11.01536 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.017912 B = 0.009093 C = 0.007265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.849548 B = 3078.715393 C = 3852.909774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.058 3.942 3 O -0.376 6.376 4 C 0.436 3.564 5 O -0.485 6.485 6 C 0.193 3.807 7 H 0.075 0.925 8 C -0.135 4.135 9 N -0.554 5.554 10 C -0.261 4.261 11 H 0.053 0.947 12 C 0.049 3.951 13 N -0.842 5.842 14 Si 0.859 3.141 15 H -0.281 1.281 16 H -0.292 1.292 17 H -0.277 1.277 18 C 0.174 3.826 19 C -0.124 4.124 20 C -0.124 4.124 21 C -0.115 4.115 22 C -0.134 4.134 23 H 0.063 0.937 24 H 0.070 0.930 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.021 0.979 29 H 0.065 0.935 30 H 0.086 0.914 31 H 0.254 0.746 32 H 0.044 0.956 33 H 0.100 0.900 34 H 0.043 0.957 35 H 0.050 0.950 36 H 0.052 0.948 37 H 0.044 0.956 38 H 0.063 0.937 39 H 0.040 0.960 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.631 -0.506 6.172 7.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.016 4.016 3 O -0.294 6.294 4 C 0.275 3.725 5 O -0.369 6.369 6 C 0.083 3.917 7 H 0.093 0.907 8 C -0.193 4.193 9 N -0.274 5.274 10 C -0.390 4.390 11 H 0.071 0.929 12 C -0.156 4.156 13 N -0.479 5.479 14 Si 0.686 3.314 15 H -0.208 1.208 16 H -0.218 1.218 17 H -0.203 1.203 18 C 0.069 3.931 19 C -0.163 4.163 20 C -0.162 4.162 21 C -0.153 4.153 22 C -0.173 4.173 23 H 0.082 0.918 24 H 0.089 0.911 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.040 0.960 29 H 0.084 0.916 30 H 0.105 0.895 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.118 0.882 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.081 0.919 39 H 0.059 0.941 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.366 -0.694 6.015 7.464 hybrid contribution -0.166 -1.061 -0.868 1.380 sum -4.531 -1.755 5.147 7.078 Atomic orbital electron populations 1.21761 0.93674 1.02056 1.03057 1.22761 0.94502 0.82691 1.01693 1.86623 1.27169 1.30397 1.85176 1.26100 0.79005 0.95337 0.72051 1.90560 1.59892 1.42916 1.43505 1.20390 0.85908 0.86536 0.98874 0.90708 1.22379 0.96530 1.02584 0.97850 1.43663 0.97402 1.62464 1.23832 1.18330 1.24970 1.11808 0.83865 0.92931 1.25178 0.98252 0.94186 0.97993 1.70493 1.43705 1.14599 1.19105 0.87107 0.78941 0.83982 0.81343 1.20754 1.21805 1.20305 1.21142 0.92004 0.91110 0.88891 1.22744 0.93916 0.97371 1.02299 1.22443 0.98778 0.96002 0.98999 1.22219 0.97065 0.95964 1.00008 1.22558 0.94808 1.01604 0.98340 0.91798 0.91141 0.91878 0.92139 0.92233 0.95991 0.91582 0.89499 0.93552 0.93807 0.88173 0.93857 0.93171 0.92915 0.93671 0.91871 0.94094 0.90662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 10.29 37.16 0.38 -1.41 16 2 C 0.06 0.96 6.19 37.16 0.23 1.19 16 3 O -0.38 -7.43 10.15 -39.25 -0.40 -7.83 16 4 C 0.44 9.88 7.13 36.01 0.26 10.14 16 5 O -0.49 -12.36 14.96 -18.75 -0.28 -12.64 16 6 C 0.19 4.28 3.29 -69.08 -0.23 4.05 16 7 H 0.08 1.47 7.57 -51.93 -0.39 1.08 16 8 C -0.13 -2.99 7.51 37.16 0.28 -2.71 16 9 N -0.55 -13.09 2.12 -158.20 -0.34 -13.43 16 10 C -0.26 -6.88 5.64 -15.06 -0.08 -6.96 16 11 H 0.05 1.50 7.23 -52.49 -0.38 1.13 16 12 C 0.05 1.28 3.36 -17.43 -0.06 1.22 16 13 N -0.84 -22.09 10.38 55.49 0.58 -21.52 16 14 Si 0.86 21.49 29.61 -169.99 -5.03 16.45 16 15 H -0.28 -7.36 7.11 56.52 0.40 -6.95 16 16 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 17 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 18 C 0.17 3.63 3.44 -66.81 -0.23 3.40 16 19 C -0.12 -2.52 6.42 -25.07 -0.16 -2.68 16 20 C -0.12 -2.13 6.91 -24.74 -0.17 -2.30 16 21 C -0.11 -2.03 6.83 -25.07 -0.17 -2.20 16 22 C -0.13 -2.62 6.25 -25.61 -0.16 -2.78 16 23 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.06 1.05 8.13 -51.93 -0.42 0.63 16 27 H 0.06 0.95 8.13 -51.93 -0.42 0.53 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 1.64 5.47 -51.93 -0.28 1.35 16 30 H 0.09 2.03 7.06 -51.92 -0.37 1.67 16 31 H 0.25 6.55 8.32 -40.82 -0.34 6.21 16 32 H 0.04 0.85 7.58 -51.93 -0.39 0.45 16 33 H 0.10 2.41 7.13 -51.93 -0.37 2.04 16 34 H 0.04 0.84 8.14 -51.92 -0.42 0.41 16 35 H 0.05 0.77 8.14 -51.92 -0.42 0.35 16 36 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 1.69 6.77 -51.93 -0.35 1.34 16 LS Contribution 316.58 15.07 4.77 4.77 Total: -1.00 -28.13 316.58 -7.56 -35.70 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -6.75 Total: -0.46 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: -0.12 Total: -1.04 kcal Atomic # 7 Polarization: -35.19 SS G_CDS: 0.24 Total: -34.95 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: -0.68 Total: -20.47 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.13 -7.56 -35.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080215858.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.314 kcal (2) G-P(sol) polarization free energy of solvation -28.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds