Wall clock time and date at job start Mon Mar 30 2020 05:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86803 * 119.99630 * 2 1 4 4 H 1.48510 * 109.46941 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47425 * 299.99897 * 3 2 1 6 6 H 1.48501 * 109.47296 * 60.00236 * 3 2 1 7 7 C 1.38810 * 120.00331 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00266 * 191.60428 * 7 2 1 9 9 N 1.36937 * 120.00018 * 11.59605 * 7 2 1 10 10 C 1.47154 * 120.98550 * 210.58160 * 9 7 2 11 11 C 1.53293 * 108.38315 * 230.56137 * 10 9 7 12 12 O 1.43053 * 109.25581 * 307.69079 * 11 10 9 13 13 C 1.42962 * 114.10590 * 62.54689 * 12 11 10 14 14 H 1.09005 * 109.51455 * 57.39740 * 13 12 11 15 15 C 1.52996 * 109.51194 * 177.50103 * 13 12 11 16 16 N 1.46907 * 109.47214 * 301.62533 * 15 13 12 17 17 C 1.46958 * 110.99801 * 169.71812 * 16 15 13 18 18 C 1.53045 * 109.35891 * 183.19027 * 17 16 15 19 19 N 1.46952 * 109.36585 * 301.59521 * 18 17 16 20 20 C 1.46957 * 110.88015 * 59.32298 * 19 18 17 21 21 C 1.46956 * 110.99578 * 293.51612 * 16 15 13 22 22 C 1.47150 * 120.97895 * 30.61101 * 9 7 2 23 23 H 0.97002 * 120.00498 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.67576 * 350.28543 * 10 9 7 25 25 H 1.09002 * 109.67781 * 110.79505 * 10 9 7 26 26 H 1.08996 * 109.51485 * 67.62443 * 11 10 9 27 27 H 1.09005 * 109.50437 * 187.72371 * 11 10 9 28 28 H 1.08998 * 109.47521 * 61.62632 * 15 13 12 29 29 H 1.08999 * 109.47461 * 181.62396 * 15 13 12 30 30 H 1.09003 * 109.48867 * 303.15224 * 17 16 15 31 31 H 1.08998 * 109.48957 * 63.21898 * 17 16 15 32 32 H 1.09006 * 109.49131 * 181.63030 * 18 17 16 33 33 H 1.09004 * 109.51173 * 61.57628 * 18 17 16 34 34 H 1.00900 * 111.00315 * 183.19120 * 19 18 17 35 35 H 1.09002 * 109.49015 * 180.70969 * 20 19 18 36 36 H 1.08999 * 109.50350 * 60.65796 * 20 19 18 37 37 H 1.08999 * 109.49026 * 296.77584 * 21 16 15 38 38 H 1.08997 * 109.48782 * 56.84666 * 21 16 15 39 39 H 1.08999 * 109.68178 * 9.71810 * 22 9 7 40 40 H 1.08999 * 109.68186 * 249.16585 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0737 -1.2117 0.1876 9 7 1.3466 -2.3758 -0.2394 10 6 1.7987 -3.6386 0.3660 11 6 1.9127 -4.6922 -0.7416 12 8 0.6842 -4.7429 -1.4727 13 6 0.3544 -3.5253 -2.1454 14 1 1.1626 -3.2541 -2.8246 15 6 -0.9392 -3.7147 -2.9402 16 7 -0.7666 -4.8113 -3.9024 17 6 -2.0510 -5.1851 -4.5108 18 6 -1.8416 -6.3795 -5.4445 19 7 -0.8570 -6.0249 -6.4761 20 6 0.4275 -5.6510 -5.8677 21 6 0.2181 -4.4565 -4.9340 22 6 0.1606 -2.4118 -1.1097 23 1 -0.4851 0.8400 -0.0004 24 1 2.7715 -3.4928 0.8356 25 1 1.0760 -3.9669 1.1130 26 1 2.7266 -4.4253 -1.4157 27 1 2.1129 -5.6672 -0.2972 28 1 -1.7535 -3.9558 -2.2569 29 1 -1.1746 -2.7951 -3.4758 30 1 -2.7593 -5.4555 -3.7276 31 1 -2.4425 -4.3423 -5.0805 32 1 -2.7876 -6.6404 -5.9191 33 1 -1.4760 -7.2309 -4.8702 34 1 -0.7384 -6.7780 -7.1370 35 1 1.1358 -5.3806 -6.6508 36 1 0.8193 -6.4936 -5.2980 37 1 -0.1476 -3.6055 -5.5085 38 1 1.1641 -4.1958 -4.4593 39 1 0.0486 -1.4537 -1.6174 40 1 -0.7274 -2.6169 -0.5119 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082652295.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:02 Heat of formation + Delta-G solvation = -7.038915 kcal Electronic energy + Delta-G solvation = -20126.850919 eV Core-core repulsion = 17170.360901 eV Total energy + Delta-G solvation = -2956.490018 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.14541 -37.96376 -34.63196 -34.17368 -31.28649 -30.94551 -30.60328 -27.42648 -26.18418 -23.90015 -23.38956 -23.06179 -21.09414 -19.69681 -19.44610 -17.03712 -16.60230 -15.67859 -15.30736 -14.76644 -14.63868 -14.45723 -14.19595 -14.09115 -13.92297 -13.62130 -13.07165 -12.81726 -12.62444 -12.23404 -11.59167 -11.42268 -11.21507 -11.11236 -10.91298 -10.81031 -10.69041 -10.54170 -10.24160 -10.20236 -9.91760 -9.43794 -8.83288 -8.59643 -8.53156 -8.02334 -6.63471 -5.81508 -3.30195 3.33888 3.41484 3.43666 4.04820 4.15389 4.44666 4.53521 4.94696 5.13059 5.21652 5.32862 5.38524 5.43736 5.46538 5.55562 5.69679 5.75639 5.80301 5.93761 5.94675 5.99718 6.06708 6.11345 6.14205 6.23364 6.45944 6.51331 6.64336 6.85538 6.87573 7.14273 7.16950 7.32336 7.36338 7.55613 7.74194 8.10736 8.39992 9.15556 9.76952 10.37088 11.26042 Molecular weight = 255.17amu Principal moments of inertia in cm(-1) A = 0.029742 B = 0.005369 C = 0.005047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.216755 B = 5213.425894 C = 5546.283109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.005 3.995 3 Si 0.905 3.095 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.254 4.254 8 H 0.066 0.934 9 N -0.595 5.595 10 C 0.109 3.891 11 C 0.049 3.951 12 O -0.373 6.373 13 C 0.074 3.926 14 H 0.045 0.955 15 C 0.069 3.931 16 N -0.528 5.528 17 C 0.055 3.945 18 C 0.061 3.939 19 N -0.694 5.694 20 C 0.061 3.939 21 C 0.055 3.945 22 C 0.152 3.848 23 H 0.254 0.746 24 H 0.059 0.941 25 H 0.025 0.975 26 H 0.038 0.962 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.047 0.953 30 H 0.077 0.923 31 H 0.037 0.963 32 H 0.075 0.925 33 H 0.039 0.961 34 H 0.339 0.661 35 H 0.075 0.925 36 H 0.040 0.960 37 H 0.037 0.963 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.527 -11.010 -10.083 15.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.194 4.194 3 Si 0.734 3.266 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.215 1.215 7 C -0.384 4.384 8 H 0.084 0.916 9 N -0.319 5.319 10 C -0.017 4.017 11 C -0.029 4.029 12 O -0.292 6.292 13 C 0.014 3.986 14 H 0.063 0.937 15 C -0.059 4.059 16 N -0.253 5.253 17 C -0.073 4.073 18 C -0.069 4.069 19 N -0.325 5.325 20 C -0.069 4.069 21 C -0.074 4.074 22 C 0.026 3.974 23 H 0.064 0.936 24 H 0.078 0.922 25 H 0.043 0.957 26 H 0.057 0.943 27 H 0.096 0.904 28 H 0.098 0.902 29 H 0.065 0.935 30 H 0.096 0.904 31 H 0.055 0.945 32 H 0.093 0.907 33 H 0.057 0.943 34 H 0.156 0.844 35 H 0.093 0.907 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.099 0.901 39 H 0.107 0.893 40 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -1.782 -10.767 -9.862 14.709 hybrid contribution 0.599 0.995 -0.040 1.162 sum -1.183 -9.772 -9.901 13.962 Atomic orbital electron populations 1.69994 1.05290 1.25472 1.54093 1.25171 0.95416 0.98449 1.00379 0.86186 0.79305 0.83730 0.77345 1.20187 1.21500 1.21548 1.19228 0.91067 0.83839 1.44239 0.91591 1.44010 1.32336 1.03209 1.52368 1.21622 0.98445 0.87781 0.93843 1.22966 0.86691 0.99011 0.94269 1.87893 1.40059 1.34444 1.66795 1.22856 0.94798 0.86856 0.94078 0.93669 1.22092 0.98371 0.91720 0.93757 1.62119 1.08367 1.39486 1.15318 1.22143 0.91738 0.96961 0.96482 1.21975 0.95703 0.96749 0.92479 1.60524 1.09907 1.44499 1.17555 1.21981 0.90626 0.97671 0.96600 1.22177 0.97127 0.96015 0.92039 1.21335 0.89224 0.96319 0.90543 0.93572 0.92242 0.95700 0.94347 0.90385 0.90187 0.93530 0.90425 0.94451 0.90703 0.94271 0.84353 0.90668 0.94216 0.94449 0.90080 0.89329 0.95457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.29 11.14 55.49 0.62 -25.67 16 2 C 0.00 0.13 5.04 -17.43 -0.09 0.04 16 3 Si 0.90 21.64 29.57 -169.99 -5.03 16.62 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 7 C -0.25 -7.05 9.63 -15.06 -0.15 -7.20 16 8 H 0.07 1.79 7.86 -52.49 -0.41 1.38 16 9 N -0.60 -15.39 3.03 -171.83 -0.52 -15.91 16 10 C 0.11 2.40 6.74 -3.53 -0.02 2.38 16 11 C 0.05 0.94 6.98 37.31 0.26 1.20 16 12 O -0.37 -7.70 10.23 -35.23 -0.36 -8.06 16 13 C 0.07 1.50 2.63 -26.58 -0.07 1.43 16 14 H 0.05 0.95 6.59 -51.93 -0.34 0.60 16 15 C 0.07 1.20 4.66 -3.82 -0.02 1.18 16 16 N -0.53 -8.26 4.54 -234.47 -1.07 -9.32 16 17 C 0.06 0.73 5.61 -3.77 -0.02 0.71 16 18 C 0.06 0.68 6.72 -3.77 -0.03 0.66 16 19 N -0.69 -7.75 6.90 -113.64 -0.78 -8.54 16 20 C 0.06 0.73 6.72 -3.77 -0.03 0.71 16 21 C 0.05 0.80 5.41 -3.77 -0.02 0.78 16 22 C 0.15 3.72 4.67 -3.53 -0.02 3.70 16 23 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 24 H 0.06 1.23 7.96 -51.93 -0.41 0.82 16 25 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 28 H 0.08 1.40 8.02 -51.93 -0.42 0.99 16 29 H 0.05 0.80 8.12 -51.93 -0.42 0.38 16 30 H 0.08 0.97 8.07 -51.93 -0.42 0.55 16 31 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.34 3.00 8.90 -39.29 -0.35 2.65 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.08 1.26 6.39 -51.93 -0.33 0.92 16 39 H 0.09 2.36 6.31 -51.93 -0.33 2.04 16 40 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 309.49 15.07 4.66 4.66 Total: -1.00 -30.62 309.49 -9.46 -40.09 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -6.80 Total: 0.56 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: -0.19 Total: 5.58 kcal Atomic # 7 Polarization: -57.69 SS G_CDS: -1.75 Total: -59.44 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: -0.36 Total: -8.06 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.62 -9.46 -40.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082652295.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.049 kcal (2) G-P(sol) polarization free energy of solvation -30.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds