Wall clock time and date at job start Mon Mar 30 2020 05:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86803 * 119.99630 * 2 1 4 4 H 1.48510 * 109.46941 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47425 * 299.99897 * 3 2 1 6 6 H 1.48501 * 109.47296 * 60.00236 * 3 2 1 7 7 C 1.38810 * 120.00331 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00266 * 191.60428 * 7 2 1 9 9 N 1.36937 * 120.00018 * 11.59605 * 7 2 1 10 10 C 1.47154 * 120.98550 * 210.58160 * 9 7 2 11 11 C 1.53293 * 108.38315 * 230.56137 * 10 9 7 12 12 O 1.43053 * 109.25581 * 307.69079 * 11 10 9 13 13 C 1.42962 * 114.10590 * 62.54689 * 12 11 10 14 14 H 1.09005 * 109.51455 * 57.39740 * 13 12 11 15 15 C 1.52996 * 109.51194 * 177.50103 * 13 12 11 16 16 N 1.46907 * 109.47214 * 301.62533 * 15 13 12 17 17 C 1.46958 * 110.99801 * 169.71812 * 16 15 13 18 18 C 1.53045 * 109.35891 * 183.19027 * 17 16 15 19 19 N 1.46952 * 109.36585 * 301.59521 * 18 17 16 20 20 C 1.46957 * 110.88015 * 59.32298 * 19 18 17 21 21 C 1.46956 * 110.99578 * 293.51612 * 16 15 13 22 22 C 1.47150 * 120.97895 * 30.61101 * 9 7 2 23 23 H 0.97002 * 120.00498 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.67576 * 350.28543 * 10 9 7 25 25 H 1.09002 * 109.67781 * 110.79505 * 10 9 7 26 26 H 1.08996 * 109.51485 * 67.62443 * 11 10 9 27 27 H 1.09005 * 109.50437 * 187.72371 * 11 10 9 28 28 H 1.08998 * 109.47521 * 61.62632 * 15 13 12 29 29 H 1.08999 * 109.47461 * 181.62396 * 15 13 12 30 30 H 1.09003 * 109.48867 * 303.15224 * 17 16 15 31 31 H 1.08998 * 109.48957 * 63.21898 * 17 16 15 32 32 H 1.09006 * 109.49131 * 181.63030 * 18 17 16 33 33 H 1.09004 * 109.51173 * 61.57628 * 18 17 16 34 34 H 1.00900 * 111.00315 * 183.19120 * 19 18 17 35 35 H 1.09002 * 109.49015 * 180.70969 * 20 19 18 36 36 H 1.08999 * 109.50350 * 60.65796 * 20 19 18 37 37 H 1.08999 * 109.49026 * 296.77584 * 21 16 15 38 38 H 1.08997 * 109.48782 * 56.84666 * 21 16 15 39 39 H 1.08999 * 109.68178 * 9.71810 * 22 9 7 40 40 H 1.08999 * 109.68186 * 249.16585 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0737 -1.2117 0.1876 9 7 1.3466 -2.3758 -0.2394 10 6 1.7987 -3.6386 0.3660 11 6 1.9127 -4.6922 -0.7416 12 8 0.6842 -4.7429 -1.4727 13 6 0.3544 -3.5253 -2.1454 14 1 1.1626 -3.2541 -2.8246 15 6 -0.9392 -3.7147 -2.9402 16 7 -0.7666 -4.8113 -3.9024 17 6 -2.0510 -5.1851 -4.5108 18 6 -1.8416 -6.3795 -5.4445 19 7 -0.8570 -6.0249 -6.4761 20 6 0.4275 -5.6510 -5.8677 21 6 0.2181 -4.4565 -4.9340 22 6 0.1606 -2.4118 -1.1097 23 1 -0.4851 0.8400 -0.0004 24 1 2.7715 -3.4928 0.8356 25 1 1.0760 -3.9669 1.1130 26 1 2.7266 -4.4253 -1.4157 27 1 2.1129 -5.6672 -0.2972 28 1 -1.7535 -3.9558 -2.2569 29 1 -1.1746 -2.7951 -3.4758 30 1 -2.7593 -5.4555 -3.7276 31 1 -2.4425 -4.3423 -5.0805 32 1 -2.7876 -6.6404 -5.9191 33 1 -1.4760 -7.2309 -4.8702 34 1 -0.7384 -6.7780 -7.1370 35 1 1.1358 -5.3806 -6.6508 36 1 0.8193 -6.4936 -5.2980 37 1 -0.1476 -3.6055 -5.5085 38 1 1.1641 -4.1958 -4.4593 39 1 0.0486 -1.4537 -1.6174 40 1 -0.7274 -2.6169 -0.5119 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082652295.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:02 Heat of formation + Delta-G solvation = -30.646325 kcal Electronic energy + Delta-G solvation = -20127.874613 eV Core-core repulsion = 17170.360901 eV Total energy + Delta-G solvation = -2957.513712 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.169 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.50633 -39.40706 -36.31709 -35.59006 -33.24365 -32.40326 -31.78676 -29.11743 -27.79772 -25.46487 -24.83719 -24.40215 -22.67044 -21.26959 -20.71136 -18.89632 -17.78988 -17.29055 -17.09106 -16.18473 -15.99739 -15.78398 -15.56031 -15.46063 -15.33406 -15.08522 -14.76478 -14.50924 -14.21642 -13.40223 -13.07411 -12.98001 -12.81422 -12.72721 -12.48829 -12.25344 -12.17106 -12.11854 -12.05131 -11.72589 -11.63925 -11.10389 -10.71461 -10.52009 -9.51439 -9.22358 -8.69217 -7.91903 -5.45452 1.44209 1.45243 1.56394 2.44759 2.79944 2.98389 3.24831 3.29343 3.55481 3.93891 4.00094 4.13440 4.22621 4.27865 4.35559 4.39399 4.41714 4.47339 4.54902 4.60670 4.63628 4.71763 4.85552 4.87539 4.91873 4.98787 5.04819 5.08527 5.10372 5.22013 5.53301 5.57805 5.91461 5.98794 6.17773 6.30612 6.46328 6.51971 7.05788 7.72603 8.29292 9.13601 Molecular weight = 255.17amu Principal moments of inertia in cm(-1) A = 0.029742 B = 0.005369 C = 0.005047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.216755 B = 5213.425894 C = 5546.283109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.047 4.047 3 Si 0.972 3.028 4 H -0.264 1.264 5 H -0.288 1.288 6 H -0.290 1.290 7 C -0.269 4.269 8 H 0.070 0.930 9 N -0.616 5.616 10 C 0.104 3.896 11 C 0.055 3.945 12 O -0.378 6.378 13 C 0.091 3.909 14 H 0.041 0.959 15 C 0.077 3.923 16 N -0.535 5.535 17 C 0.052 3.948 18 C 0.065 3.935 19 N -0.697 5.697 20 C 0.067 3.933 21 C 0.053 3.947 22 C 0.162 3.838 23 H 0.252 0.748 24 H 0.070 0.930 25 H 0.016 0.984 26 H 0.043 0.957 27 H 0.115 0.885 28 H 0.076 0.924 29 H 0.045 0.955 30 H 0.083 0.917 31 H 0.034 0.966 32 H 0.099 0.901 33 H 0.036 0.964 34 H 0.356 0.644 35 H 0.093 0.907 36 H 0.035 0.965 37 H 0.031 0.969 38 H 0.067 0.933 39 H 0.060 0.940 40 H -0.001 1.001 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.823 -12.196 -11.255 16.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.243 4.243 3 Si 0.800 3.200 4 H -0.189 1.189 5 H -0.214 1.214 6 H -0.217 1.217 7 C -0.399 4.399 8 H 0.087 0.913 9 N -0.341 5.341 10 C -0.021 4.021 11 C -0.022 4.022 12 O -0.297 6.297 13 C 0.031 3.969 14 H 0.059 0.941 15 C -0.051 4.051 16 N -0.260 5.260 17 C -0.076 4.076 18 C -0.064 4.064 19 N -0.330 5.330 20 C -0.062 4.062 21 C -0.075 4.075 22 C 0.036 3.964 23 H 0.061 0.939 24 H 0.088 0.912 25 H 0.034 0.966 26 H 0.061 0.939 27 H 0.133 0.867 28 H 0.095 0.905 29 H 0.063 0.937 30 H 0.101 0.899 31 H 0.052 0.948 32 H 0.117 0.883 33 H 0.054 0.946 34 H 0.175 0.825 35 H 0.111 0.889 36 H 0.053 0.947 37 H 0.049 0.951 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.017 0.983 Dipole moment (debyes) X Y Z Total from point charges -1.064 -11.995 -11.048 16.343 hybrid contribution 0.378 1.325 0.365 1.426 sum -0.686 -10.670 -10.683 15.114 Atomic orbital electron populations 1.70156 1.06797 1.26032 1.55226 1.25967 0.96206 1.01726 1.00369 0.85137 0.78610 0.79343 0.76942 1.18862 1.21422 1.21657 1.19575 0.91508 0.84944 1.43898 0.91256 1.44317 1.32390 1.04122 1.53235 1.21805 0.98496 0.87045 0.94745 1.23028 0.86174 0.99817 0.93227 1.87894 1.40908 1.34058 1.66817 1.22562 0.96066 0.85472 0.92779 0.94070 1.21898 0.96523 0.92628 0.94082 1.62106 1.09906 1.38221 1.15760 1.22260 0.90588 0.97746 0.97023 1.21965 0.96894 0.95332 0.92230 1.60495 1.09340 1.45460 1.17674 1.21906 0.91499 0.96268 0.96545 1.22202 0.96089 0.97163 0.92046 1.21115 0.88045 0.96479 0.90763 0.93882 0.91176 0.96596 0.93877 0.86683 0.90541 0.93727 0.89893 0.94821 0.88287 0.94613 0.82486 0.88852 0.94669 0.95087 0.91454 0.92187 0.98259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.93 11.14 21.65 0.24 -55.69 16 2 C -0.05 -2.65 5.04 84.86 0.43 -2.22 16 3 Si 0.97 44.85 29.57 68.60 2.03 46.88 16 4 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 5 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 6 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 7 C -0.27 -15.09 9.63 84.03 0.81 -14.28 16 8 H 0.07 3.75 7.86 -2.91 -0.02 3.73 16 9 N -0.62 -32.31 3.03 -697.54 -2.12 -34.42 16 10 C 0.10 4.53 6.74 86.35 0.58 5.12 16 11 C 0.06 2.02 6.98 72.08 0.50 2.52 16 12 O -0.38 -15.24 10.23 -148.98 -1.52 -16.77 16 13 C 0.09 3.73 2.63 30.69 0.08 3.81 16 14 H 0.04 1.74 6.59 -2.38 -0.02 1.72 16 15 C 0.08 2.72 4.66 86.30 0.40 3.12 16 16 N -0.54 -16.26 4.54 -895.72 -4.07 -20.33 16 17 C 0.05 1.29 5.61 86.31 0.48 1.78 16 18 C 0.07 1.30 6.72 86.31 0.58 1.88 16 19 N -0.70 -13.72 6.90 -513.44 -3.54 -17.26 16 20 C 0.07 1.49 6.72 86.31 0.58 2.07 16 21 C 0.05 1.50 5.41 86.31 0.47 1.97 16 22 C 0.16 8.20 4.67 86.36 0.40 8.61 16 23 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 24 H 0.07 2.84 7.96 -2.39 -0.02 2.82 16 25 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.12 3.37 8.14 -2.38 -0.02 3.35 16 28 H 0.08 2.72 8.02 -2.39 -0.02 2.70 16 29 H 0.04 1.57 8.12 -2.39 -0.02 1.55 16 30 H 0.08 1.96 8.07 -2.39 -0.02 1.94 16 31 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.10 1.52 8.14 -2.38 -0.02 1.50 16 33 H 0.04 0.75 8.14 -2.38 -0.02 0.73 16 34 H 0.36 5.18 8.90 -89.69 -0.80 4.38 16 35 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.04 0.81 8.14 -2.39 -0.02 0.80 16 37 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.07 2.05 6.39 -2.39 -0.02 2.04 16 39 H 0.06 3.35 6.31 -2.39 -0.02 3.33 16 40 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 Total: -1.00 -65.78 309.49 -3.45 -69.24 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: 0.21 Total: 13.99 kcal Atomic # 6 Polarization: 9.05 SS G_CDS: 5.32 Total: 14.37 kcal Atomic # 7 Polarization: -118.22 SS G_CDS: -9.49 Total: -127.71 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: -1.52 Total: -16.77 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -65.78 -3.45 -69.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082652295.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.590 kcal (2) G-P(sol) polarization free energy of solvation -65.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds