Wall clock time and date at job start Mon Mar 30 2020 05:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36928 * 120.00430 * 2 1 4 4 H 1.08000 * 120.00460 * 184.70363 * 3 2 1 5 5 C 1.38814 * 120.00014 * 4.70947 * 3 2 1 6 6 N 1.31617 * 119.99955 * 6.12565 * 5 3 2 7 7 Si 1.86798 * 120.00143 * 186.12700 * 5 3 2 8 8 H 1.48500 * 109.47446 * 89.99528 * 7 5 3 9 9 H 1.48498 * 109.47085 * 209.99887 * 7 5 3 10 10 H 1.48508 * 109.47190 * 329.99893 * 7 5 3 11 11 C 1.46499 * 119.99565 * 180.02562 * 2 1 3 12 12 C 1.53006 * 109.47105 * 255.55384 * 11 2 1 13 13 C 1.53002 * 109.47415 * 135.55436 * 11 2 1 14 14 C 1.50698 * 109.47456 * 15.55496 * 11 2 1 15 15 O 1.21286 * 120.00362 * 239.71490 * 14 11 2 16 16 N 1.34777 * 120.00150 * 59.43232 * 14 11 2 17 17 C 1.47083 * 120.87782 * 1.95690 * 16 14 11 18 18 C 1.52783 * 108.76183 * 231.11998 * 17 16 14 19 19 N 1.46908 * 109.42384 * 306.42187 * 18 17 16 20 20 C 1.46899 * 111.26491 * 62.96760 * 19 18 17 21 21 C 1.47080 * 120.88272 * 182.22972 * 16 14 11 22 22 H 1.08992 * 109.47514 * 174.49313 * 1 2 3 23 23 H 1.09002 * 109.46662 * 294.49771 * 1 2 3 24 24 H 1.08997 * 109.46910 * 54.49000 * 1 2 3 25 25 H 0.97004 * 120.00012 * 180.02562 * 6 5 3 26 26 H 1.09000 * 109.46978 * 180.02562 * 12 11 2 27 27 H 1.08992 * 109.46724 * 299.99861 * 12 11 2 28 28 H 1.08997 * 109.46824 * 60.00277 * 12 11 2 29 29 H 1.08998 * 109.47191 * 293.45913 * 13 11 2 30 30 H 1.09005 * 109.46846 * 53.45478 * 13 11 2 31 31 H 1.08999 * 109.47309 * 173.45260 * 13 11 2 32 32 H 1.08993 * 109.62840 * 350.88398 * 17 16 14 33 33 H 1.08997 * 109.62746 * 111.47395 * 17 16 14 34 34 H 1.08999 * 109.56464 * 186.37150 * 18 17 16 35 35 H 1.08998 * 109.36008 * 66.35428 * 18 17 16 36 36 H 1.00894 * 111.00183 * 187.11508 * 19 18 17 37 37 H 1.09000 * 109.48877 * 176.93834 * 20 19 18 38 38 H 1.08997 * 109.51837 * 56.86819 * 20 19 18 39 39 H 1.08999 * 109.62928 * 248.53041 * 21 16 14 40 40 H 1.09002 * 109.62867 * 9.10902 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.2270 1.1874 -0.0767 5 6 1.4593 2.3860 0.0987 6 7 0.1607 2.3824 0.3132 7 14 2.3731 4.0061 -0.0730 8 1 2.3872 4.4178 -1.4997 9 1 1.6904 5.0476 0.7360 10 1 3.7683 3.8410 0.4083 11 6 2.1974 -1.2688 -0.0006 12 6 2.7641 -1.5312 1.3963 13 6 3.3443 -1.1952 -1.0106 14 6 1.2632 -2.3880 -0.3821 15 8 1.0735 -3.3079 0.3853 16 7 0.6339 -2.3640 -1.5737 17 6 0.8774 -1.2769 -2.5341 18 6 -0.4672 -0.7041 -2.9792 19 7 -1.3217 -1.7916 -3.4746 20 6 -1.6208 -2.7604 -2.4116 21 6 -0.3189 -3.4208 -1.9457 22 1 -0.3634 -1.0228 -0.0986 23 1 -0.3633 0.4261 0.9352 24 1 -0.3633 0.5969 -0.8365 25 1 -0.3218 3.2211 0.3818 26 1 3.3094 -2.4750 1.3957 27 1 3.4398 -0.7217 1.6721 28 1 1.9470 -1.5837 2.1158 29 1 2.9365 -1.1247 -2.0190 30 1 3.9551 -0.3164 -0.8035 31 1 3.9585 -2.0920 -0.9289 32 1 1.4682 -0.4940 -2.0588 33 1 1.4108 -1.6670 -3.4010 34 1 -0.3084 0.0245 -3.7742 35 1 -0.9512 -0.2183 -2.1320 36 1 -2.1702 -1.4280 -3.8817 37 1 -2.2986 -3.5231 -2.7950 38 1 -2.0889 -2.2467 -1.5719 39 1 0.0973 -4.0208 -2.7549 40 1 -0.5186 -4.0545 -1.0816 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082652296.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:21 Heat of formation + Delta-G solvation = 28.992111 kcal Electronic energy + Delta-G solvation = -21431.392898 eV Core-core repulsion = 18476.465302 eV Total energy + Delta-G solvation = -2954.927596 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.169 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.26738 -37.28257 -36.15867 -33.29231 -32.59188 -30.81108 -29.68413 -26.82530 -26.53407 -25.76730 -23.42310 -22.82922 -22.04487 -19.83849 -18.30067 -16.88294 -16.38230 -15.86239 -15.24525 -14.95669 -14.55832 -14.47196 -14.11743 -13.60664 -13.54722 -12.93697 -12.72424 -12.13453 -11.90073 -11.65806 -11.58019 -11.47473 -11.29084 -11.01717 -10.92858 -10.85139 -10.76131 -10.68917 -10.26552 -10.16338 -10.14534 -9.70855 -8.98027 -8.65027 -8.46556 -7.96230 -6.98244 -5.70315 -3.16250 3.14089 3.34364 3.41647 3.42378 3.47274 4.40135 4.43442 5.00732 5.24855 5.28228 5.31949 5.39322 5.53743 5.57543 5.71471 5.81055 5.85846 5.90768 6.00323 6.10180 6.26508 6.36203 6.41515 6.49391 6.56513 6.61411 6.73808 6.82623 6.92605 7.07432 7.16669 7.44430 7.49895 7.66851 7.86996 7.90583 8.27591 8.72025 9.17969 9.78111 10.21091 11.28278 Molecular weight = 255.17amu Principal moments of inertia in cm(-1) A = 0.022252 B = 0.009286 C = 0.007595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.995190 B = 3014.698852 C = 3685.862902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.594 5.594 3 C -0.245 4.245 4 H 0.080 0.920 5 C -0.001 4.001 6 N -0.916 5.916 7 Si 0.909 3.091 8 H -0.288 1.288 9 H -0.292 1.292 10 H -0.281 1.281 11 C 0.181 3.819 12 C -0.136 4.136 13 C -0.164 4.164 14 C 0.532 3.468 15 O -0.557 6.557 16 N -0.607 5.607 17 C 0.097 3.903 18 C 0.032 3.968 19 N -0.692 5.692 20 C 0.045 3.955 21 C 0.115 3.885 22 H -0.003 1.003 23 H 0.043 0.957 24 H 0.050 0.950 25 H 0.250 0.750 26 H 0.043 0.957 27 H 0.060 0.940 28 H 0.052 0.948 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.046 0.954 32 H 0.137 0.863 33 H 0.057 0.943 34 H 0.079 0.921 35 H 0.061 0.939 36 H 0.339 0.661 37 H 0.079 0.921 38 H 0.036 0.964 39 H 0.066 0.934 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.660 -6.857 -6.959 9.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.321 5.321 3 C -0.374 4.374 4 H 0.098 0.902 5 C -0.198 4.198 6 N -0.564 5.564 7 Si 0.739 3.261 8 H -0.215 1.215 9 H -0.219 1.219 10 H -0.206 1.206 11 C 0.090 3.910 12 C -0.197 4.197 13 C -0.222 4.222 14 C 0.321 3.679 15 O -0.434 6.434 16 N -0.340 5.340 17 C -0.026 4.026 18 C -0.097 4.097 19 N -0.323 5.323 20 C -0.086 4.086 21 C -0.009 4.009 22 H 0.016 0.984 23 H 0.061 0.939 24 H 0.068 0.932 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.065 0.935 32 H 0.154 0.846 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.079 0.921 36 H 0.156 0.844 37 H 0.097 0.903 38 H 0.054 0.946 39 H 0.084 0.916 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.351 -7.566 -6.764 10.155 hybrid contribution -0.353 1.516 0.430 1.615 sum -0.705 -6.050 -6.334 8.788 Atomic orbital electron populations 1.21413 0.81456 0.93417 1.02049 1.44141 1.02088 0.99216 1.86628 1.19258 0.91460 0.82832 1.43827 0.90179 1.24834 0.95887 0.97742 1.01312 1.70218 1.06338 1.24756 1.55044 0.86174 0.78718 0.83627 0.77536 1.21539 1.21853 1.20643 1.19913 0.90853 0.85080 0.95193 1.22042 1.00754 0.99777 0.97082 1.22479 0.98435 1.01807 0.99515 1.21042 0.79914 0.87030 0.79882 1.90596 1.64509 1.37626 1.50675 1.48113 1.43221 1.25398 1.17281 1.22344 0.97314 0.91039 0.91903 1.22547 0.94533 0.92524 1.00115 1.60373 1.21579 1.17711 1.32636 1.22261 0.96881 0.95898 0.93517 1.21580 0.88703 0.90379 1.00205 0.98441 0.93885 0.93152 0.93929 0.93810 0.92110 0.92872 0.91574 0.90613 0.93541 0.84604 0.92431 0.90222 0.92099 0.84379 0.90314 0.94581 0.91613 0.89386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.86 6.38 59.85 0.38 4.24 16 2 N -0.59 -13.90 1.50 -167.43 -0.25 -14.15 16 3 C -0.25 -6.14 8.90 -15.06 -0.13 -6.27 16 4 H 0.08 1.93 6.16 -52.49 -0.32 1.61 16 5 C 0.00 -0.03 5.41 -17.43 -0.09 -0.13 16 6 N -0.92 -25.13 9.53 55.49 0.53 -24.60 16 7 Si 0.91 20.86 29.56 -169.99 -5.02 15.83 16 8 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 9 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 11 C 0.18 3.76 0.67 -132.97 -0.09 3.67 16 12 C -0.14 -2.81 7.93 37.16 0.29 -2.51 16 13 C -0.16 -2.93 7.87 37.16 0.29 -2.63 16 14 C 0.53 11.00 4.78 -10.99 -0.05 10.95 16 15 O -0.56 -12.71 15.44 5.55 0.09 -12.62 16 16 N -0.61 -10.86 2.13 -172.74 -0.37 -11.23 16 17 C 0.10 1.64 3.87 -3.84 -0.01 1.62 16 18 C 0.03 0.51 6.40 -3.93 -0.03 0.48 16 19 N -0.69 -9.35 6.82 -113.76 -0.78 -10.13 16 20 C 0.04 0.61 6.70 -3.70 -0.02 0.58 16 21 C 0.11 1.77 6.60 -3.60 -0.02 1.74 16 22 H 0.00 -0.06 5.19 -51.93 -0.27 -0.33 16 23 H 0.04 1.18 6.93 -51.93 -0.36 0.82 16 24 H 0.05 1.24 4.91 -51.93 -0.25 0.99 16 25 H 0.25 6.75 8.31 -40.82 -0.34 6.42 16 26 H 0.04 0.82 8.10 -51.93 -0.42 0.40 16 27 H 0.06 1.23 8.04 -51.93 -0.42 0.81 16 28 H 0.05 1.18 8.10 -51.93 -0.42 0.76 16 29 H 0.07 1.12 4.77 -51.93 -0.25 0.87 16 30 H 0.08 1.37 6.26 -51.93 -0.32 1.05 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.14 2.63 3.56 -51.93 -0.18 2.44 16 33 H 0.06 0.89 8.07 -51.93 -0.42 0.48 16 34 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.06 1.12 4.97 -51.93 -0.26 0.87 16 36 H 0.34 3.90 8.90 -39.29 -0.35 3.55 16 37 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.09 1.43 7.07 -51.93 -0.37 1.06 16 LS Contribution 291.86 15.07 4.40 4.40 Total: -1.00 -28.67 291.86 -6.76 -35.44 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -5.87 Total: 5.32 kcal Atomic # 6 Polarization: 11.23 SS G_CDS: 0.51 Total: 11.74 kcal Atomic # 7 Polarization: -59.24 SS G_CDS: -0.87 Total: -60.11 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.09 Total: -12.62 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -28.67 -6.76 -35.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082652296.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.428 kcal (2) G-P(sol) polarization free energy of solvation -28.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds