Wall clock time and date at job start Mon Mar 30 2020 05:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36928 * 120.00430 * 2 1 4 4 H 1.08000 * 120.00460 * 184.70363 * 3 2 1 5 5 C 1.38814 * 120.00014 * 4.70947 * 3 2 1 6 6 N 1.31617 * 119.99955 * 6.12565 * 5 3 2 7 7 Si 1.86798 * 120.00143 * 186.12700 * 5 3 2 8 8 H 1.48500 * 109.47446 * 89.99528 * 7 5 3 9 9 H 1.48498 * 109.47085 * 209.99887 * 7 5 3 10 10 H 1.48508 * 109.47190 * 329.99893 * 7 5 3 11 11 C 1.46499 * 119.99565 * 180.02562 * 2 1 3 12 12 C 1.53006 * 109.47105 * 255.55384 * 11 2 1 13 13 C 1.53002 * 109.47415 * 135.55436 * 11 2 1 14 14 C 1.50698 * 109.47456 * 15.55496 * 11 2 1 15 15 O 1.21286 * 120.00362 * 239.71490 * 14 11 2 16 16 N 1.34777 * 120.00150 * 59.43232 * 14 11 2 17 17 C 1.47083 * 120.87782 * 1.95690 * 16 14 11 18 18 C 1.52783 * 108.76183 * 231.11998 * 17 16 14 19 19 N 1.46908 * 109.42384 * 306.42187 * 18 17 16 20 20 C 1.46899 * 111.26491 * 62.96760 * 19 18 17 21 21 C 1.47080 * 120.88272 * 182.22972 * 16 14 11 22 22 H 1.08992 * 109.47514 * 174.49313 * 1 2 3 23 23 H 1.09002 * 109.46662 * 294.49771 * 1 2 3 24 24 H 1.08997 * 109.46910 * 54.49000 * 1 2 3 25 25 H 0.97004 * 120.00012 * 180.02562 * 6 5 3 26 26 H 1.09000 * 109.46978 * 180.02562 * 12 11 2 27 27 H 1.08992 * 109.46724 * 299.99861 * 12 11 2 28 28 H 1.08997 * 109.46824 * 60.00277 * 12 11 2 29 29 H 1.08998 * 109.47191 * 293.45913 * 13 11 2 30 30 H 1.09005 * 109.46846 * 53.45478 * 13 11 2 31 31 H 1.08999 * 109.47309 * 173.45260 * 13 11 2 32 32 H 1.08993 * 109.62840 * 350.88398 * 17 16 14 33 33 H 1.08997 * 109.62746 * 111.47395 * 17 16 14 34 34 H 1.08999 * 109.56464 * 186.37150 * 18 17 16 35 35 H 1.08998 * 109.36008 * 66.35428 * 18 17 16 36 36 H 1.00894 * 111.00183 * 187.11508 * 19 18 17 37 37 H 1.09000 * 109.48877 * 176.93834 * 20 19 18 38 38 H 1.08997 * 109.51837 * 56.86819 * 20 19 18 39 39 H 1.08999 * 109.62928 * 248.53041 * 21 16 14 40 40 H 1.09002 * 109.62867 * 9.10902 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.2270 1.1874 -0.0767 5 6 1.4593 2.3860 0.0987 6 7 0.1607 2.3824 0.3132 7 14 2.3731 4.0061 -0.0730 8 1 2.3872 4.4178 -1.4997 9 1 1.6904 5.0476 0.7360 10 1 3.7683 3.8410 0.4083 11 6 2.1974 -1.2688 -0.0006 12 6 2.7641 -1.5312 1.3963 13 6 3.3443 -1.1952 -1.0106 14 6 1.2632 -2.3880 -0.3821 15 8 1.0735 -3.3079 0.3853 16 7 0.6339 -2.3640 -1.5737 17 6 0.8774 -1.2769 -2.5341 18 6 -0.4672 -0.7041 -2.9792 19 7 -1.3217 -1.7916 -3.4746 20 6 -1.6208 -2.7604 -2.4116 21 6 -0.3189 -3.4208 -1.9457 22 1 -0.3634 -1.0228 -0.0986 23 1 -0.3633 0.4261 0.9352 24 1 -0.3633 0.5969 -0.8365 25 1 -0.3218 3.2211 0.3818 26 1 3.3094 -2.4750 1.3957 27 1 3.4398 -0.7217 1.6721 28 1 1.9470 -1.5837 2.1158 29 1 2.9365 -1.1247 -2.0190 30 1 3.9551 -0.3164 -0.8035 31 1 3.9585 -2.0920 -0.9289 32 1 1.4682 -0.4940 -2.0588 33 1 1.4108 -1.6670 -3.4010 34 1 -0.3084 0.0245 -3.7742 35 1 -0.9512 -0.2183 -2.1320 36 1 -2.1702 -1.4280 -3.8817 37 1 -2.2986 -3.5231 -2.7950 38 1 -2.0889 -2.2467 -1.5719 39 1 0.0973 -4.0208 -2.7549 40 1 -0.5186 -4.0545 -1.0816 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082652296.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:20 Heat of formation + Delta-G solvation = 9.762449 kcal Electronic energy + Delta-G solvation = -21432.226759 eV Core-core repulsion = 18476.465302 eV Total energy + Delta-G solvation = -2955.761457 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.81386 -38.65252 -37.91776 -34.78841 -34.28989 -32.09800 -31.55240 -28.53932 -27.98614 -27.46573 -24.93241 -24.41908 -23.61202 -21.27067 -19.80235 -18.57362 -18.15559 -17.44552 -16.65697 -16.43083 -16.12105 -15.92409 -15.53425 -15.17843 -15.07286 -14.56238 -14.37085 -13.67046 -13.49033 -13.32095 -13.17068 -13.00308 -12.87076 -12.64916 -12.63300 -12.34805 -12.30059 -12.08984 -12.07041 -11.94627 -11.71077 -11.59766 -10.67248 -10.49182 -9.84000 -9.28412 -8.90465 -7.69273 -5.16053 1.48997 1.53361 1.56972 1.62236 2.04918 2.55573 3.26604 3.39569 3.49425 3.59989 3.99817 4.07026 4.23050 4.23993 4.31683 4.41506 4.45111 4.61912 4.68835 4.78155 4.83907 4.89698 4.94404 4.96756 5.01122 5.06987 5.09774 5.28693 5.37413 5.50816 5.60299 5.69175 5.85733 5.94060 6.28279 6.34429 6.49153 7.12908 7.20094 7.86204 8.26468 9.28875 Molecular weight = 255.17amu Principal moments of inertia in cm(-1) A = 0.022252 B = 0.009286 C = 0.007595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.995190 B = 3014.698852 C = 3685.862902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.188 3.812 2 N -0.599 5.599 3 C -0.239 4.239 4 H 0.092 0.908 5 C -0.055 4.055 6 N -0.947 5.947 7 Si 0.969 3.031 8 H -0.283 1.283 9 H -0.306 1.306 10 H -0.271 1.271 11 C 0.171 3.829 12 C -0.130 4.130 13 C -0.155 4.155 14 C 0.526 3.474 15 O -0.585 6.585 16 N -0.602 5.602 17 C 0.097 3.903 18 C 0.038 3.962 19 N -0.681 5.681 20 C 0.050 3.950 21 C 0.110 3.890 22 H 0.003 0.997 23 H 0.000 1.000 24 H 0.044 0.956 25 H 0.242 0.758 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.026 0.974 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.114 0.886 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.029 0.971 36 H 0.354 0.646 37 H 0.114 0.886 38 H 0.014 0.986 39 H 0.087 0.913 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.246 -7.569 -8.906 11.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.326 5.326 3 C -0.368 4.368 4 H 0.110 0.890 5 C -0.248 4.248 6 N -0.596 5.596 7 Si 0.798 3.202 8 H -0.210 1.210 9 H -0.233 1.233 10 H -0.196 1.196 11 C 0.080 3.920 12 C -0.190 4.190 13 C -0.213 4.213 14 C 0.315 3.685 15 O -0.466 6.466 16 N -0.334 5.334 17 C -0.025 4.025 18 C -0.091 4.091 19 N -0.313 5.313 20 C -0.081 4.081 21 C -0.012 4.012 22 H 0.021 0.979 23 H 0.019 0.981 24 H 0.062 0.938 25 H 0.052 0.948 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.045 0.955 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.131 0.869 33 H 0.099 0.901 34 H 0.111 0.889 35 H 0.047 0.953 36 H 0.173 0.827 37 H 0.132 0.868 38 H 0.032 0.968 39 H 0.105 0.895 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.567 -8.295 -8.753 12.072 hybrid contribution -0.649 1.652 1.019 2.047 sum -0.081 -6.643 -7.734 10.195 Atomic orbital electron populations 1.21001 0.82222 0.92988 0.99461 1.44225 1.01774 1.00071 1.86483 1.19593 0.92043 0.83269 1.41910 0.89028 1.25530 0.96554 1.00598 1.02111 1.70414 1.07662 1.24684 1.56843 0.85221 0.77862 0.79812 0.77255 1.21003 1.23349 1.19557 1.20145 0.91793 0.83974 0.96066 1.21968 0.99899 1.00721 0.96440 1.22383 0.97263 1.02703 0.98935 1.21007 0.80273 0.86673 0.80566 1.90579 1.65625 1.38657 1.51701 1.48184 1.42710 1.25985 1.16510 1.22330 0.97930 0.90258 0.91986 1.22384 0.94130 0.93210 0.99408 1.60364 1.22229 1.16769 1.31924 1.22267 0.96312 0.96452 0.93019 1.21794 0.89041 0.89916 1.00481 0.97920 0.98136 0.93818 0.94817 0.92054 0.92050 0.95517 0.90598 0.90847 0.91458 0.86857 0.90111 0.88851 0.95268 0.82688 0.86828 0.96751 0.89478 0.90463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.28 6.38 127.77 0.82 10.10 16 2 N -0.60 -28.10 1.50 -683.62 -1.03 -29.13 16 3 C -0.24 -11.87 8.90 84.04 0.75 -11.13 16 4 H 0.09 4.28 6.16 -2.91 -0.02 4.26 16 5 C -0.05 -2.87 5.41 84.86 0.46 -2.41 16 6 N -0.95 -53.20 9.53 21.65 0.21 -53.00 16 7 Si 0.97 42.82 29.56 68.60 2.03 44.84 16 8 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 9 H -0.31 -14.15 7.11 99.48 0.71 -13.44 16 10 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 11 C 0.17 6.95 0.67 2.86 0.00 6.95 16 12 C -0.13 -5.31 7.93 71.98 0.57 -4.74 16 13 C -0.15 -5.18 7.87 71.98 0.57 -4.61 16 14 C 0.53 21.37 4.78 87.66 0.42 21.79 16 15 O -0.59 -26.62 15.44 -3.05 -0.05 -26.67 16 16 N -0.60 -20.68 2.13 -818.82 -1.74 -22.42 16 17 C 0.10 3.11 3.87 86.20 0.33 3.44 16 18 C 0.04 1.15 6.40 86.23 0.55 1.70 16 19 N -0.68 -16.56 6.82 -513.84 -3.50 -20.07 16 20 C 0.05 1.24 6.70 86.38 0.58 1.82 16 21 C 0.11 3.17 6.60 86.35 0.57 3.74 16 22 H 0.00 0.12 5.19 -2.39 -0.01 0.11 16 23 H 0.00 0.01 6.93 -2.39 -0.02 -0.01 16 24 H 0.04 2.22 4.91 -2.39 -0.01 2.21 16 25 H 0.24 13.47 8.31 -92.71 -0.77 12.69 16 26 H 0.06 2.24 8.10 -2.39 -0.02 2.22 16 27 H 0.06 2.44 8.04 -2.39 -0.02 2.42 16 28 H 0.03 1.18 8.10 -2.39 -0.02 1.16 16 29 H 0.08 2.38 4.77 -2.39 -0.01 2.37 16 30 H 0.07 2.49 6.26 -2.38 -0.01 2.47 16 31 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.11 4.22 3.56 -2.39 -0.01 4.21 16 33 H 0.08 2.24 8.07 -2.39 -0.02 2.22 16 34 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 35 H 0.03 1.08 4.97 -2.39 -0.01 1.07 16 36 H 0.35 7.13 8.90 -89.70 -0.80 6.34 16 37 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 39 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.08 2.42 7.07 -2.39 -0.02 2.40 16 Total: -1.00 -61.91 291.86 1.78 -60.13 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: 0.26 Total: 19.66 kcal Atomic # 6 Polarization: 21.04 SS G_CDS: 5.61 Total: 26.66 kcal Atomic # 7 Polarization: -118.55 SS G_CDS: -6.07 Total: -124.62 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: -0.05 Total: -26.67 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.84 kcal Total: -61.91 1.78 -60.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082652296.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.891 kcal (2) G-P(sol) polarization free energy of solvation -61.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds