Wall clock time and date at job start Mon Mar 30 2020 05:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.50845 * 2 1 4 4 C 1.53056 * 109.48644 * 120.05397 * 2 1 3 5 5 N 1.46954 * 109.36346 * 178.36713 * 4 2 1 6 6 C 1.46953 * 110.88290 * 300.68189 * 5 4 2 7 7 C 1.53056 * 109.36571 * 59.31944 * 6 5 4 8 8 N 1.46956 * 109.48673 * 239.94299 * 2 1 3 9 9 C 1.46898 * 111.00097 * 56.84971 * 8 2 1 10 10 C 1.50700 * 109.46953 * 189.84104 * 9 8 2 11 11 O 1.21278 * 119.99930 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99980 * 179.97438 * 10 9 8 13 13 C 1.46496 * 120.00121 * 180.02562 * 12 10 9 14 14 C 1.50705 * 109.47194 * 180.02562 * 13 12 10 15 15 H 1.08004 * 119.99584 * 359.97438 * 14 13 12 16 16 C 1.37881 * 120.00123 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99708 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99887 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46747 * 89.99883 * 18 16 14 20 20 H 1.48496 * 109.46882 * 209.99784 * 18 16 14 21 21 H 1.48497 * 109.47065 * 329.99866 * 18 16 14 22 22 H 1.08993 * 109.46960 * 299.94665 * 1 2 3 23 23 H 1.09002 * 109.46612 * 59.94743 * 1 2 3 24 24 H 1.09000 * 109.46561 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47659 * 180.02562 * 3 2 1 26 26 H 1.09001 * 109.47358 * 300.05689 * 3 2 1 27 27 H 1.09004 * 109.47284 * 60.05216 * 3 2 1 28 28 H 1.09002 * 109.48967 * 58.40424 * 4 2 1 29 29 H 1.08996 * 109.50411 * 298.34389 * 4 2 1 30 30 H 1.00904 * 110.99842 * 64.54814 * 5 4 2 31 31 H 1.08997 * 109.48869 * 299.34965 * 6 5 4 32 32 H 1.09004 * 109.51107 * 179.29532 * 6 5 4 33 33 H 1.08994 * 109.49121 * 61.56772 * 7 6 5 34 34 H 1.08998 * 109.48697 * 181.63542 * 7 6 5 35 35 H 1.09000 * 109.46858 * 309.83707 * 9 8 2 36 36 H 1.08995 * 109.47574 * 69.84179 * 9 8 2 37 37 H 0.97006 * 120.00072 * 359.97438 * 12 10 9 38 38 H 1.09001 * 109.47148 * 299.99988 * 13 12 10 39 39 H 1.08992 * 109.47353 * 60.00294 * 13 12 10 40 40 H 0.96996 * 119.99101 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0410 1.4421 0.0000 4 6 2.0406 -0.7226 1.2489 5 7 3.5096 -0.7553 1.2266 6 6 4.0000 -1.4491 0.0275 7 6 3.4894 -0.7265 -1.2214 8 7 2.0203 -0.6939 -1.1991 9 6 1.4889 -0.0740 -2.4203 10 6 1.8102 -0.9457 -3.6068 11 8 2.4212 -1.9816 -3.4504 12 7 1.4176 -0.5747 -4.8416 13 6 1.7294 -1.4224 -5.9950 14 6 1.1844 -0.7864 -7.2478 15 1 0.6580 0.1550 -7.1905 16 6 1.3578 -1.4062 -8.4672 17 7 1.9992 -2.5522 -8.5370 18 14 0.6816 -0.6181 -10.0200 19 1 1.7097 0.2772 -10.6087 20 1 0.3283 -1.6772 -10.9990 21 1 -0.5307 0.1721 -9.6865 22 1 -0.3633 0.5130 0.8904 23 1 -0.3632 0.5147 -0.8896 24 1 -0.3632 -1.0277 -0.0005 25 1 3.1309 1.4415 -0.0005 26 1 1.6772 1.9565 -0.8895 27 1 1.6788 1.9559 0.8905 28 1 1.6544 -1.7418 1.2628 29 1 1.7022 -0.1933 2.1395 30 1 3.8930 0.1760 1.2876 31 1 3.6360 -2.4765 0.0275 32 1 5.0900 -1.4495 0.0272 33 1 3.8756 0.2926 -1.2353 34 1 3.8278 -1.2562 -2.1119 35 1 0.4080 0.0351 -2.3316 36 1 1.9432 0.9074 -2.5569 37 1 0.9280 0.2534 -4.9665 38 1 2.8103 -1.5316 -6.0840 39 1 1.2752 -2.4036 -5.8581 40 1 2.1215 -2.9880 -9.3949 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083842777.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:32 Heat of formation + Delta-G solvation = -27.286155 kcal Electronic energy + Delta-G solvation = -19750.693924 eV Core-core repulsion = 16793.325920 eV Total energy + Delta-G solvation = -2957.368005 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.169 amu Computer time = 4.96 seconds Orbital eigenvalues (eV) -40.40627 -38.37952 -34.60406 -34.18196 -32.88802 -32.32274 -28.89039 -27.62209 -27.35162 -26.30961 -24.06383 -22.33233 -21.98607 -19.71087 -18.73051 -17.25347 -16.52199 -15.82706 -15.44766 -15.18803 -15.01710 -14.77651 -14.32555 -14.27022 -13.77669 -13.46609 -13.07950 -12.67893 -12.44984 -12.11748 -11.98318 -11.92836 -11.89537 -11.67309 -11.41417 -11.18961 -10.99845 -10.93519 -10.78832 -10.71718 -10.31196 -9.40385 -9.08684 -8.74180 -8.46597 -8.12888 -7.85191 -6.17507 -4.24494 3.23092 3.29184 3.31602 3.38562 3.58594 4.19579 4.23446 4.40772 4.63322 4.80054 4.90971 5.06213 5.11997 5.18603 5.33267 5.37685 5.41733 5.43313 5.54519 5.55827 5.61699 5.69836 5.71400 5.81888 5.96542 6.05500 6.11886 6.23080 6.84517 6.96137 7.17699 7.27075 7.32727 7.45401 7.51763 7.67007 7.96621 8.63566 8.78624 9.12888 9.42432 10.92723 Molecular weight = 255.17amu Principal moments of inertia in cm(-1) A = 0.042382 B = 0.004196 C = 0.003986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.498735 B = 6671.311058 C = 7022.908270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.066 3.934 3 C -0.184 4.184 4 C 0.074 3.926 5 N -0.687 5.687 6 C 0.062 3.938 7 C 0.010 3.990 8 N -0.501 5.501 9 C 0.029 3.971 10 C 0.499 3.501 11 O -0.539 6.539 12 N -0.715 5.715 13 C 0.252 3.748 14 C -0.544 4.544 15 H 0.062 0.938 16 C 0.064 3.936 17 N -0.885 5.885 18 Si 0.904 3.096 19 H -0.279 1.279 20 H -0.284 1.284 21 H -0.273 1.273 22 H 0.060 0.940 23 H 0.058 0.942 24 H 0.067 0.933 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.334 0.666 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.027 0.973 34 H 0.105 0.895 35 H 0.102 0.898 36 H 0.056 0.944 37 H 0.389 0.611 38 H 0.025 0.975 39 H 0.027 0.973 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.911 8.461 17.675 19.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.026 4.026 3 C -0.243 4.243 4 C -0.057 4.057 5 N -0.315 5.315 6 C -0.068 4.068 7 C -0.119 4.119 8 N -0.225 5.225 9 C -0.102 4.102 10 C 0.283 3.717 11 O -0.417 6.417 12 N -0.365 5.365 13 C 0.131 3.869 14 C -0.582 4.582 15 H 0.080 0.920 16 C -0.140 4.140 17 N -0.523 5.523 18 Si 0.731 3.269 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.198 1.198 22 H 0.079 0.921 23 H 0.077 0.923 24 H 0.086 0.914 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.101 0.899 29 H 0.094 0.906 30 H 0.152 0.848 31 H 0.103 0.897 32 H 0.095 0.905 33 H 0.045 0.955 34 H 0.123 0.877 35 H 0.120 0.880 36 H 0.074 0.926 37 H 0.221 0.779 38 H 0.043 0.957 39 H 0.045 0.955 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.506 6.473 18.067 19.198 hybrid contribution -0.513 2.395 -1.887 3.092 sum -1.020 8.868 16.180 18.479 Atomic orbital electron populations 1.21885 0.93348 1.02912 1.01711 1.21888 0.96210 0.91835 0.92659 1.22509 1.01502 0.97721 1.02590 1.22101 0.87605 1.01273 0.94686 1.60787 1.07580 1.23006 1.40151 1.22081 0.99285 0.99205 0.86235 1.23040 0.87370 0.99179 1.02352 1.61977 1.08702 1.51965 0.99870 1.22127 1.02017 0.95975 0.90100 1.20305 0.80432 0.86820 0.84186 1.90619 1.40853 1.24938 1.85252 1.46456 1.56658 1.25918 1.07421 1.19074 0.96661 0.90248 0.80928 1.21230 1.37764 1.07643 0.91562 0.91962 1.24953 0.94975 0.94814 0.99254 1.69978 1.40481 1.15929 1.25874 0.86418 0.79234 0.78913 0.82363 1.20480 1.20970 1.19754 0.92116 0.92295 0.91390 0.92494 0.92168 0.91861 0.89940 0.90559 0.84798 0.89739 0.90469 0.95469 0.87730 0.87986 0.92644 0.77917 0.95680 0.95545 0.92441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 8.17 37.16 0.30 -1.05 16 2 C 0.07 0.70 0.68 -131.54 -0.09 0.61 16 3 C -0.18 -1.72 7.49 37.15 0.28 -1.44 16 4 C 0.07 0.76 5.49 -3.77 -0.02 0.74 16 5 N -0.69 -7.36 6.83 -113.63 -0.78 -8.14 16 6 C 0.06 0.76 6.72 -3.77 -0.03 0.73 16 7 C 0.01 0.14 4.87 -3.76 -0.02 0.12 16 8 N -0.50 -7.05 4.21 -220.24 -0.93 -7.98 16 9 C 0.03 0.42 4.60 -4.98 -0.02 0.40 16 10 C 0.50 9.94 7.53 -10.99 -0.08 9.86 16 11 O -0.54 -12.85 14.33 5.56 0.08 -12.77 16 12 N -0.72 -15.05 5.55 -61.48 -0.34 -15.39 16 13 C 0.25 6.69 5.43 -5.19 -0.03 6.66 16 14 C -0.54 -14.77 9.28 -34.44 -0.32 -15.09 16 15 H 0.06 1.58 7.60 -52.48 -0.40 1.18 16 16 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 17 N -0.89 -26.15 13.29 55.43 0.74 -25.42 16 18 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 22 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.06 0.57 6.16 -51.93 -0.32 0.25 16 24 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.06 0.55 5.10 -51.93 -0.26 0.28 16 26 H 0.06 0.58 6.71 -51.93 -0.35 0.23 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.33 3.16 7.27 -39.29 -0.29 2.87 16 31 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.03 0.36 6.34 -51.93 -0.33 0.03 16 34 H 0.10 1.84 5.84 -51.93 -0.30 1.54 16 35 H 0.10 1.32 5.74 -51.93 -0.30 1.02 16 36 H 0.06 0.73 6.90 -51.93 -0.36 0.37 16 37 H 0.39 6.99 8.32 -40.82 -0.34 6.65 16 38 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 308.36 15.07 4.65 4.65 Total: -1.00 -31.42 308.36 -7.91 -39.33 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -6.19 Total: 6.69 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: -0.12 Total: 3.21 kcal Atomic # 7 Polarization: -55.61 SS G_CDS: -1.31 Total: -56.92 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: 0.08 Total: -12.77 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.42 -7.91 -39.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083842777.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.046 kcal (2) G-P(sol) polarization free energy of solvation -31.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.96 seconds