Wall clock time and date at job start Mon Mar 30 2020 05:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.50845 * 2 1 4 4 C 1.53056 * 109.48644 * 120.05397 * 2 1 3 5 5 N 1.46954 * 109.36346 * 178.36713 * 4 2 1 6 6 C 1.46953 * 110.88290 * 300.68189 * 5 4 2 7 7 C 1.53056 * 109.36571 * 59.31944 * 6 5 4 8 8 N 1.46956 * 109.48673 * 239.94299 * 2 1 3 9 9 C 1.46898 * 111.00097 * 56.84971 * 8 2 1 10 10 C 1.50700 * 109.46953 * 189.84104 * 9 8 2 11 11 O 1.21278 * 119.99930 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99980 * 179.97438 * 10 9 8 13 13 C 1.46496 * 120.00121 * 180.02562 * 12 10 9 14 14 C 1.50705 * 109.47194 * 180.02562 * 13 12 10 15 15 H 1.08004 * 119.99584 * 359.97438 * 14 13 12 16 16 C 1.37881 * 120.00123 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99708 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99887 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46747 * 89.99883 * 18 16 14 20 20 H 1.48496 * 109.46882 * 209.99784 * 18 16 14 21 21 H 1.48497 * 109.47065 * 329.99866 * 18 16 14 22 22 H 1.08993 * 109.46960 * 299.94665 * 1 2 3 23 23 H 1.09002 * 109.46612 * 59.94743 * 1 2 3 24 24 H 1.09000 * 109.46561 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47659 * 180.02562 * 3 2 1 26 26 H 1.09001 * 109.47358 * 300.05689 * 3 2 1 27 27 H 1.09004 * 109.47284 * 60.05216 * 3 2 1 28 28 H 1.09002 * 109.48967 * 58.40424 * 4 2 1 29 29 H 1.08996 * 109.50411 * 298.34389 * 4 2 1 30 30 H 1.00904 * 110.99842 * 64.54814 * 5 4 2 31 31 H 1.08997 * 109.48869 * 299.34965 * 6 5 4 32 32 H 1.09004 * 109.51107 * 179.29532 * 6 5 4 33 33 H 1.08994 * 109.49121 * 61.56772 * 7 6 5 34 34 H 1.08998 * 109.48697 * 181.63542 * 7 6 5 35 35 H 1.09000 * 109.46858 * 309.83707 * 9 8 2 36 36 H 1.08995 * 109.47574 * 69.84179 * 9 8 2 37 37 H 0.97006 * 120.00072 * 359.97438 * 12 10 9 38 38 H 1.09001 * 109.47148 * 299.99988 * 13 12 10 39 39 H 1.08992 * 109.47353 * 60.00294 * 13 12 10 40 40 H 0.96996 * 119.99101 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0410 1.4421 0.0000 4 6 2.0406 -0.7226 1.2489 5 7 3.5096 -0.7553 1.2266 6 6 4.0000 -1.4491 0.0275 7 6 3.4894 -0.7265 -1.2214 8 7 2.0203 -0.6939 -1.1991 9 6 1.4889 -0.0740 -2.4203 10 6 1.8102 -0.9457 -3.6068 11 8 2.4212 -1.9816 -3.4504 12 7 1.4176 -0.5747 -4.8416 13 6 1.7294 -1.4224 -5.9950 14 6 1.1844 -0.7864 -7.2478 15 1 0.6580 0.1550 -7.1905 16 6 1.3578 -1.4062 -8.4672 17 7 1.9992 -2.5522 -8.5370 18 14 0.6816 -0.6181 -10.0200 19 1 1.7097 0.2772 -10.6087 20 1 0.3283 -1.6772 -10.9990 21 1 -0.5307 0.1721 -9.6865 22 1 -0.3633 0.5130 0.8904 23 1 -0.3632 0.5147 -0.8896 24 1 -0.3632 -1.0277 -0.0005 25 1 3.1309 1.4415 -0.0005 26 1 1.6772 1.9565 -0.8895 27 1 1.6788 1.9559 0.8905 28 1 1.6544 -1.7418 1.2628 29 1 1.7022 -0.1933 2.1395 30 1 3.8930 0.1760 1.2876 31 1 3.6360 -2.4765 0.0275 32 1 5.0900 -1.4495 0.0272 33 1 3.8756 0.2926 -1.2353 34 1 3.8278 -1.2562 -2.1119 35 1 0.4080 0.0351 -2.3316 36 1 1.9432 0.9074 -2.5569 37 1 0.9280 0.2534 -4.9665 38 1 2.8103 -1.5316 -6.0840 39 1 1.2752 -2.4036 -5.8581 40 1 2.1215 -2.9880 -9.3949 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083842777.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:29 Heat of formation + Delta-G solvation = -53.556967 kcal Electronic energy + Delta-G solvation = -19751.833112 eV Core-core repulsion = 16793.325920 eV Total energy + Delta-G solvation = -2958.507192 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.169 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.50344 -39.93455 -36.17842 -35.53443 -34.34758 -33.90387 -30.35673 -28.87820 -28.27328 -27.58234 -25.37042 -24.11124 -23.00083 -21.41639 -19.68121 -18.99555 -17.78429 -17.39257 -16.83406 -16.69609 -16.27966 -16.02933 -15.69986 -15.44720 -15.12181 -14.53966 -14.39655 -14.17288 -13.91114 -13.62035 -13.44544 -13.00319 -12.84225 -12.74702 -12.72637 -12.59881 -12.37080 -12.23723 -12.04073 -11.86664 -11.70760 -11.49760 -10.81204 -10.68304 -9.84195 -9.45669 -9.12782 -8.30401 -6.47359 1.42108 1.44652 1.55950 1.77381 2.24128 2.43263 2.97707 3.04513 3.33810 3.81340 3.86394 3.99684 4.06693 4.11687 4.20499 4.29353 4.36867 4.56768 4.59525 4.67994 4.71929 4.91084 4.94390 4.97624 5.06954 5.08979 5.10085 5.22519 5.22939 5.38920 5.47914 5.68302 5.83498 5.90333 5.96011 6.20794 6.48169 6.63885 6.93265 7.22496 7.51622 8.81899 Molecular weight = 255.17amu Principal moments of inertia in cm(-1) A = 0.042382 B = 0.004196 C = 0.003986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.498735 B = 6671.311058 C = 7022.908270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.066 3.934 3 C -0.180 4.180 4 C 0.074 3.926 5 N -0.684 5.684 6 C 0.069 3.931 7 C 0.015 3.985 8 N -0.524 5.524 9 C 0.045 3.955 10 C 0.493 3.507 11 O -0.583 6.583 12 N -0.710 5.710 13 C 0.269 3.731 14 C -0.557 4.557 15 H 0.084 0.916 16 C 0.004 3.996 17 N -0.932 5.932 18 Si 0.985 3.015 19 H -0.270 1.270 20 H -0.284 1.284 21 H -0.255 1.255 22 H 0.086 0.914 23 H 0.060 0.940 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.085 0.915 28 H 0.064 0.936 29 H 0.104 0.896 30 H 0.346 0.654 31 H 0.061 0.939 32 H 0.089 0.911 33 H 0.041 0.959 34 H 0.061 0.939 35 H 0.126 0.874 36 H 0.079 0.921 37 H 0.407 0.593 38 H -0.015 1.015 39 H -0.015 1.015 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.265 11.418 18.671 22.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.025 4.025 3 C -0.238 4.238 4 C -0.056 4.056 5 N -0.312 5.312 6 C -0.061 4.061 7 C -0.114 4.114 8 N -0.249 5.249 9 C -0.085 4.085 10 C 0.280 3.720 11 O -0.464 6.464 12 N -0.361 5.361 13 C 0.146 3.854 14 C -0.594 4.594 15 H 0.102 0.898 16 C -0.196 4.196 17 N -0.570 5.570 18 Si 0.808 3.192 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.178 1.178 22 H 0.105 0.895 23 H 0.079 0.921 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.104 0.896 28 H 0.083 0.917 29 H 0.122 0.878 30 H 0.165 0.835 31 H 0.080 0.920 32 H 0.107 0.893 33 H 0.059 0.941 34 H 0.080 0.920 35 H 0.144 0.856 36 H 0.097 0.903 37 H 0.242 0.758 38 H 0.003 0.997 39 H 0.003 0.997 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.881 9.482 19.109 21.415 hybrid contribution -0.063 1.420 -2.101 2.537 sum -1.943 10.903 17.008 20.296 Atomic orbital electron populations 1.21899 0.92315 1.02419 1.03115 1.22012 0.96970 0.92603 0.90884 1.22461 1.01268 0.96377 1.03720 1.22156 0.87139 1.00705 0.95619 1.60756 1.08080 1.23696 1.38716 1.21944 0.99920 0.97968 0.86267 1.22895 0.87838 0.99437 1.01269 1.61925 1.08609 1.53516 1.00829 1.22010 1.03572 0.95146 0.87796 1.21365 0.78810 0.86773 0.85032 1.90608 1.42528 1.27283 1.85947 1.46192 1.57232 1.26027 1.06653 1.18489 0.93775 0.89634 0.83467 1.21625 1.37749 1.08382 0.91670 0.89805 1.26081 0.94966 0.95171 1.03375 1.70146 1.41997 1.17851 1.27026 0.85147 0.79047 0.77880 0.77088 1.19575 1.20959 1.17845 0.89522 0.92069 0.92856 0.92821 0.92187 0.89598 0.91738 0.87831 0.83507 0.92044 0.89281 0.94118 0.92009 0.85624 0.90306 0.75769 0.99699 0.99719 0.92250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 8.17 71.98 0.59 -1.69 16 2 C 0.07 1.24 0.68 3.54 0.00 1.25 16 3 C -0.18 -2.67 7.49 71.98 0.54 -2.14 16 4 C 0.07 1.35 5.49 86.31 0.47 1.83 16 5 N -0.68 -13.40 6.83 -513.43 -3.51 -16.91 16 6 C 0.07 1.69 6.72 86.31 0.58 2.27 16 7 C 0.02 0.43 4.87 86.31 0.42 0.85 16 8 N -0.52 -14.32 4.21 -850.72 -3.58 -17.90 16 9 C 0.05 1.26 4.60 85.56 0.39 1.66 16 10 C 0.49 20.11 7.53 87.66 0.66 20.77 16 11 O -0.58 -29.43 14.33 -3.02 -0.04 -29.47 16 12 N -0.71 -30.37 5.55 -466.80 -2.59 -32.96 16 13 C 0.27 15.00 5.43 85.64 0.46 15.47 16 14 C -0.56 -30.47 9.28 25.60 0.24 -30.24 16 15 H 0.08 4.13 7.60 -2.91 -0.02 4.11 16 16 C 0.00 0.20 5.46 84.65 0.46 0.66 16 17 N -0.93 -56.72 13.29 21.45 0.28 -56.43 16 18 Si 0.99 42.37 29.54 68.60 2.03 44.39 16 19 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 20 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 21 H -0.25 -10.15 7.11 99.48 0.71 -9.44 16 22 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 23 H 0.06 0.97 6.16 -2.39 -0.01 0.96 16 24 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.05 0.85 5.10 -2.39 -0.01 0.83 16 26 H 0.06 0.92 6.71 -2.39 -0.02 0.90 16 27 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 28 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.35 5.59 7.27 -89.69 -0.65 4.94 16 31 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.04 1.02 6.34 -2.39 -0.02 1.00 16 34 H 0.06 2.30 5.84 -2.39 -0.01 2.28 16 35 H 0.13 2.94 5.74 -2.39 -0.01 2.92 16 36 H 0.08 1.87 6.90 -2.39 -0.02 1.85 16 37 H 0.41 14.24 8.32 -92.70 -0.77 13.47 16 38 H -0.01 -0.94 8.14 -2.39 -0.02 -0.96 16 39 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 40 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -71.88 308.36 -2.96 -74.84 By element: Atomic # 1 Polarization: 24.12 SS G_CDS: -0.37 Total: 23.75 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: 4.82 Total: 10.68 kcal Atomic # 7 Polarization: -114.81 SS G_CDS: -9.40 Total: -124.20 kcal Atomic # 8 Polarization: -29.43 SS G_CDS: -0.04 Total: -29.47 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.39 kcal Total: -71.88 -2.96 -74.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083842777.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.288 kcal (2) G-P(sol) polarization free energy of solvation -71.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds