Wall clock time and date at job start Mon Mar 30 2020 03:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46906 * 109.47274 * 2 1 4 4 C 1.46903 * 110.99348 * 71.81061 * 3 2 1 5 5 C 1.52997 * 109.47032 * 200.08135 * 4 3 2 6 6 H 1.09002 * 109.47144 * 304.74760 * 5 4 3 7 7 C 1.53002 * 109.47311 * 64.74618 * 5 4 3 8 8 C 1.50702 * 109.47438 * 184.74716 * 5 4 3 9 9 O 1.20828 * 119.99656 * 0.02562 * 8 5 4 10 10 O 1.34224 * 120.00133 * 180.02562 * 8 5 4 11 11 C 1.46890 * 111.00298 * 195.76226 * 3 2 1 12 12 C 1.53005 * 109.46914 * 64.10345 * 11 3 2 13 13 C 1.50696 * 115.55132 * 53.51044 * 12 11 3 14 14 H 1.07994 * 120.00157 * 215.35429 * 13 12 11 15 15 C 1.37877 * 119.99921 * 35.07526 * 13 12 11 16 16 N 1.31524 * 120.00012 * 12.34056 * 15 13 12 17 17 Si 1.86799 * 120.00257 * 192.33894 * 15 13 12 18 18 H 1.48504 * 109.46695 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47217 * 119.99773 * 17 15 13 20 20 H 1.48496 * 109.47570 * 240.00287 * 17 15 13 21 21 C 1.53006 * 117.49868 * 199.17738 * 12 11 3 22 22 C 1.53000 * 117.49625 * 267.83551 * 12 11 3 23 23 H 1.09003 * 109.46854 * 183.69346 * 1 2 3 24 24 H 1.09001 * 109.46852 * 303.69003 * 1 2 3 25 25 H 1.09004 * 109.47208 * 63.68949 * 1 2 3 26 26 H 1.09008 * 109.47189 * 240.00809 * 2 1 3 27 27 H 1.08995 * 109.47707 * 120.00543 * 2 1 3 28 28 H 1.09002 * 109.47395 * 320.08550 * 4 3 2 29 29 H 1.09004 * 109.46896 * 80.08277 * 4 3 2 30 30 H 1.08991 * 109.47557 * 185.81301 * 7 5 4 31 31 H 1.09001 * 109.47090 * 305.81752 * 7 5 4 32 32 H 1.09004 * 109.46704 * 65.81205 * 7 5 4 33 33 H 0.96706 * 116.99647 * 180.02562 * 10 8 5 34 34 H 1.09004 * 109.47330 * 304.10503 * 11 3 2 35 35 H 1.08997 * 109.47358 * 184.10050 * 11 3 2 36 36 H 0.97004 * 119.99933 * 184.06260 * 16 15 13 37 37 H 1.08994 * 117.49948 * 215.00137 * 21 12 11 38 38 H 1.09000 * 117.49480 * 0.02889 * 21 12 11 39 39 H 1.08995 * 117.50462 * 359.97438 * 22 12 11 40 40 H 1.09001 * 117.49507 * 144.97593 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7915 2.0239 1.3030 5 6 1.8332 3.5446 1.1396 6 1 2.7764 3.8346 0.6765 7 6 0.6702 3.9944 0.2529 8 6 1.7157 4.1986 2.4922 9 8 1.6100 3.5182 3.4851 10 8 1.7285 5.5370 2.5939 11 6 3.4395 1.4414 -0.3725 12 6 3.6089 0.9516 -1.8121 13 6 2.7476 1.6408 -2.8388 14 1 2.3520 1.0825 -3.6743 15 6 2.4598 2.9828 -2.7083 16 7 3.1214 3.7158 -1.8395 17 14 1.1304 3.7602 -3.7655 18 1 0.5397 2.7287 -4.6557 19 1 0.0705 4.3251 -2.8921 20 1 1.7234 4.8444 -4.5888 21 6 5.0065 0.5059 -2.2469 22 6 3.9064 -0.5344 -2.0222 23 1 -0.3633 -1.0256 0.0662 24 1 -0.3633 0.5701 0.8551 25 1 -0.3634 0.4555 -0.9212 26 1 1.8934 -0.5137 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 0.8160 1.7264 1.6877 29 1 2.5681 1.7121 2.0015 30 1 0.7584 5.0619 0.0517 31 1 0.6965 3.4440 -0.6876 32 1 -0.2728 3.7974 0.7629 33 1 1.6507 5.9104 3.4826 34 1 4.0167 0.8049 0.2982 35 1 3.7952 2.4688 -0.2941 36 1 2.8795 4.6456 -1.7055 37 1 5.3029 0.7112 -3.2754 38 1 5.8052 0.5613 -1.5072 39 1 3.9819 -1.1630 -1.1350 40 1 3.4787 -1.0137 -2.9029 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083854817.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:24 Heat of formation + Delta-G solvation = -78.983756 kcal Electronic energy + Delta-G solvation = -20771.989742 eV Core-core repulsion = 17780.087210 eV Total energy + Delta-G solvation = -2991.902532 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.38657 -39.54303 -37.33858 -36.86979 -34.46823 -33.76826 -31.21205 -27.84120 -27.21291 -25.99210 -24.85762 -22.95144 -22.08538 -20.94181 -20.50291 -19.02886 -18.13219 -17.50186 -16.78593 -16.44638 -16.02942 -15.91981 -15.30253 -15.11387 -14.70336 -14.54123 -14.11181 -13.61389 -13.44738 -13.14095 -12.95770 -12.71207 -12.55473 -12.50449 -12.46613 -12.23599 -12.20510 -12.16316 -11.94383 -11.63326 -11.54631 -11.29031 -10.95799 -10.83704 -10.31437 -9.76569 -8.75977 -7.82154 -5.84112 1.22016 1.50297 1.57363 1.62805 2.13993 2.61944 3.18225 3.45104 3.83078 3.88943 4.04455 4.33171 4.37274 4.41364 4.54908 4.61712 4.67184 4.71562 4.80295 4.82294 4.87434 4.98980 5.01918 5.06523 5.09043 5.20956 5.26105 5.30836 5.49287 5.53227 5.60631 5.61468 5.62739 5.78219 6.13793 6.52594 6.60054 6.75195 7.04402 7.10126 7.75454 9.20333 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.016722 B = 0.009690 C = 0.007927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.993949 B = 2888.750222 C = 3531.402368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.049 3.951 3 N -0.506 5.506 4 C 0.080 3.920 5 C -0.071 4.071 6 H 0.112 0.888 7 C -0.120 4.120 8 C 0.494 3.506 9 O -0.551 6.551 10 O -0.508 6.508 11 C 0.110 3.890 12 C 0.049 3.951 13 C -0.490 4.490 14 H 0.033 0.967 15 C 0.076 3.924 16 N -0.874 5.874 17 Si 0.913 3.087 18 H -0.286 1.286 19 H -0.268 1.268 20 H -0.296 1.296 21 C -0.211 4.211 22 C -0.200 4.200 23 H 0.069 0.931 24 H 0.051 0.949 25 H 0.048 0.952 26 H 0.075 0.925 27 H 0.020 0.980 28 H 0.077 0.923 29 H 0.021 0.979 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.052 0.948 33 H 0.424 0.576 34 H -0.014 1.014 35 H 0.096 0.904 36 H 0.259 0.741 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.887 0.330 7.109 8.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.079 4.079 3 N -0.229 5.229 4 C -0.048 4.048 5 C -0.091 4.091 6 H 0.130 0.870 7 C -0.177 4.177 8 C 0.338 3.662 9 O -0.442 6.442 10 O -0.321 6.321 11 C -0.017 4.017 12 C 0.049 3.951 13 C -0.527 4.527 14 H 0.052 0.948 15 C -0.127 4.127 16 N -0.511 5.511 17 Si 0.741 3.259 18 H -0.212 1.212 19 H -0.193 1.193 20 H -0.223 1.223 21 C -0.249 4.249 22 C -0.237 4.237 23 H 0.088 0.912 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.094 0.906 27 H 0.038 0.962 28 H 0.095 0.905 29 H 0.039 0.961 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.071 0.929 33 H 0.286 0.714 34 H 0.004 0.996 35 H 0.114 0.886 36 H 0.069 0.931 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.098 0.902 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.116 0.461 6.669 7.851 hybrid contribution 0.026 0.171 0.436 0.469 sum -4.089 0.632 7.106 8.223 Atomic orbital electron populations 1.21704 0.94583 1.01471 1.01533 1.22135 0.96451 0.89216 1.00059 1.61600 1.18723 1.16490 1.26094 1.21761 1.00763 0.91996 0.90289 1.20871 1.04049 0.95149 0.88991 0.87003 1.21533 0.94861 1.01057 1.00241 1.23718 0.70078 0.80545 0.91871 1.90653 1.47764 1.65262 1.40507 1.84556 1.84448 1.22352 1.40711 1.21554 0.86271 1.01357 0.92538 1.18983 0.92484 0.90032 0.93645 1.20322 1.30815 0.93876 1.07701 0.94844 1.24894 0.95654 0.96552 0.95572 1.69918 1.38099 1.07291 1.35800 0.86295 0.81874 0.78089 0.79626 1.21176 1.19324 1.22273 1.22978 0.94161 1.07512 1.00275 1.22923 1.05530 0.93990 1.01257 0.91230 0.92998 0.93233 0.90621 0.96189 0.90485 0.96102 0.92568 0.90671 0.92875 0.71449 0.99581 0.88634 0.93096 0.91442 0.91069 0.90226 0.90958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.16 10.02 71.98 0.72 -3.44 16 2 C 0.05 1.75 5.52 86.30 0.48 2.22 16 3 N -0.51 -19.95 3.29 -896.21 -2.95 -22.90 16 4 C 0.08 2.91 3.57 86.30 0.31 3.22 16 5 C -0.07 -2.50 2.88 -11.54 -0.03 -2.53 16 6 H 0.11 4.42 5.88 -2.39 -0.01 4.40 16 7 C -0.12 -4.17 9.00 71.98 0.65 -3.52 16 8 C 0.49 15.65 7.63 71.24 0.54 16.20 16 9 O -0.55 -19.54 16.68 21.96 0.37 -19.18 16 10 O -0.51 -12.71 13.35 -51.36 -0.69 -13.39 16 11 C 0.11 4.80 3.89 86.31 0.34 5.14 16 12 C 0.05 2.27 1.36 -52.93 -0.07 2.20 16 13 C -0.49 -24.99 8.71 25.60 0.22 -24.77 16 14 H 0.03 1.79 7.84 -2.91 -0.02 1.77 16 15 C 0.08 3.75 4.42 84.65 0.37 4.12 16 16 N -0.87 -42.62 9.77 21.45 0.21 -42.41 16 17 Si 0.91 40.71 28.81 68.60 1.98 42.69 16 18 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 19 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 20 H -0.30 -13.38 7.11 99.48 0.71 -12.67 16 21 C -0.21 -9.20 9.96 30.62 0.30 -8.89 16 22 C -0.20 -8.19 8.06 30.62 0.25 -7.95 16 23 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 24 H 0.05 1.51 6.43 -2.39 -0.02 1.50 16 25 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 26 H 0.08 2.91 5.20 -2.38 -0.01 2.90 16 27 H 0.02 0.67 8.05 -2.39 -0.02 0.65 16 28 H 0.08 2.64 6.19 -2.39 -0.01 2.63 16 29 H 0.02 0.78 7.82 -2.38 -0.02 0.77 16 30 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.07 3.06 5.91 -2.39 -0.01 3.04 16 32 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 33 H 0.42 6.16 9.10 -74.05 -0.67 5.49 16 34 H -0.01 -0.59 8.08 -2.38 -0.02 -0.61 16 35 H 0.10 4.54 4.60 -2.39 -0.01 4.53 16 36 H 0.26 12.19 8.32 -92.71 -0.77 11.42 16 37 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 38 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 39 H 0.08 2.98 8.03 -2.39 -0.02 2.96 16 40 H 0.07 2.96 8.14 -2.39 -0.02 2.94 16 Total: -1.00 -55.16 316.69 3.35 -51.80 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: 0.36 Total: 21.38 kcal Atomic # 6 Polarization: -22.08 SS G_CDS: 4.08 Total: -18.00 kcal Atomic # 7 Polarization: -62.56 SS G_CDS: -2.74 Total: -65.30 kcal Atomic # 8 Polarization: -32.25 SS G_CDS: -0.32 Total: -32.57 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 1.98 Total: 42.69 kcal Total: -55.16 3.35 -51.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854817.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.180 kcal (2) G-P(sol) polarization free energy of solvation -55.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds