Wall clock time and date at job start Mon Mar 30 2020 05:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53005 * 109.47524 * 2 1 4 4 H 1.09003 * 109.46761 * 304.99944 * 3 2 1 5 5 C 1.50694 * 109.47503 * 184.99783 * 3 2 1 6 6 H 1.07993 * 119.99991 * 240.00117 * 5 3 2 7 7 C 1.37879 * 119.99781 * 59.99873 * 5 3 2 8 8 N 1.31506 * 120.00369 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99853 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46797 * 60.00179 * 9 7 5 11 11 H 1.48503 * 109.47137 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47310 * 300.00377 * 9 7 5 13 13 N 1.46896 * 109.46809 * 64.99523 * 3 2 1 14 14 C 1.46958 * 111.00264 * 64.49694 * 13 3 2 15 15 C 1.53048 * 109.36735 * 183.18444 * 14 13 3 16 16 N 1.46954 * 109.36599 * 301.59825 * 15 14 13 17 17 C 1.46965 * 110.87748 * 59.32041 * 16 15 14 18 18 C 1.46954 * 110.99857 * 188.29390 * 13 3 2 19 19 H 1.08995 * 109.49065 * 296.78191 * 18 13 3 20 20 C 1.50698 * 109.49036 * 56.84723 * 18 13 3 21 21 O 1.21285 * 120.00201 * 28.23427 * 20 18 13 22 22 N 1.34781 * 120.00286 * 208.23749 * 20 18 13 23 23 C 1.46499 * 120.00101 * 179.97438 * 22 20 18 24 24 H 1.09007 * 109.46831 * 60.00039 * 1 2 3 25 25 H 1.08997 * 109.47512 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47617 * 300.00527 * 1 2 3 27 27 H 1.09006 * 109.47686 * 239.99973 * 2 1 3 28 28 H 1.09001 * 109.47193 * 119.99704 * 2 1 3 29 29 H 0.97006 * 120.00682 * 180.02562 * 8 7 5 30 30 H 1.08998 * 109.48929 * 63.21570 * 14 13 3 31 31 H 1.09005 * 109.48632 * 303.15675 * 14 13 3 32 32 H 1.09000 * 109.48747 * 181.62704 * 15 14 13 33 33 H 1.09003 * 109.48775 * 61.56450 * 15 14 13 34 34 H 1.00902 * 111.00039 * 183.18656 * 16 15 14 35 35 H 1.08998 * 109.49162 * 60.64891 * 17 16 15 36 36 H 1.09001 * 109.48502 * 180.69000 * 17 16 15 37 37 H 0.96999 * 119.99785 * 359.97438 * 22 20 18 38 38 H 1.09000 * 109.46990 * 300.00256 * 23 22 20 39 39 H 1.08998 * 109.47120 * 60.00263 * 23 22 20 40 40 H 1.08998 * 109.46626 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1238 6 1 4.1471 1.8888 0.6523 7 6 4.1433 0.8784 -1.2279 8 7 3.4063 0.3374 -2.1732 9 14 6.0050 0.8812 -1.3817 10 1 6.5974 0.1472 -0.2347 11 1 6.3979 0.2166 -2.6502 12 1 6.4995 2.2814 -1.3820 13 7 1.6513 2.0993 1.2552 14 6 2.3058 1.4633 2.4070 15 6 1.8149 2.1230 3.6978 16 7 2.1135 3.5613 3.6541 17 6 1.4589 4.1973 2.5022 18 6 1.9499 3.5375 1.2114 19 1 3.0259 3.6827 1.1153 20 6 1.2506 4.1605 0.0309 21 8 0.2201 3.6772 -0.3879 22 7 1.7703 5.2549 -0.5598 23 6 1.0907 5.8602 -1.7078 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8293 -0.0611 -2.9499 30 1 3.3858 1.5849 2.3245 31 1 2.0595 0.4016 2.4247 32 1 2.3207 1.6724 4.5517 33 1 0.7388 1.9778 3.7939 34 1 1.8465 4.0124 4.5162 35 1 0.3789 4.0756 2.5847 36 1 1.7050 5.2590 2.4847 37 1 2.5943 5.6417 -0.2247 38 1 1.0236 5.1317 -2.5158 39 1 0.0880 6.1706 -1.4141 40 1 1.6553 6.7284 -2.0477 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084212107.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:43 Heat of formation + Delta-G solvation = -22.192162 kcal Electronic energy + Delta-G solvation = -20925.137958 eV Core-core repulsion = 17967.990846 eV Total energy + Delta-G solvation = -2957.147112 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.169 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.68184 -37.59177 -35.14241 -33.97373 -32.18671 -31.18893 -30.40010 -27.17843 -26.42007 -24.54772 -23.32900 -22.47551 -20.30549 -19.58725 -18.85110 -17.24510 -16.04987 -15.85180 -15.27230 -14.82555 -14.77457 -14.06718 -13.86618 -13.74135 -13.43773 -13.12973 -12.60887 -12.45092 -12.17427 -11.97382 -11.69679 -11.57765 -11.18438 -10.95769 -10.78526 -10.72845 -10.59675 -10.34418 -9.91798 -9.57235 -9.33887 -9.11393 -8.92874 -8.62698 -8.27971 -8.22507 -7.09873 -5.94839 -4.09276 3.27842 3.29951 3.33776 3.35788 3.68559 4.40603 4.52652 4.96999 5.28496 5.32372 5.40350 5.54285 5.61355 5.78605 5.79941 5.85244 5.97760 6.09849 6.10426 6.32338 6.48044 6.57650 6.66287 6.82711 6.83938 6.86950 7.15265 7.24734 7.37006 7.39673 7.56877 7.66905 7.80805 7.93841 8.03092 8.19311 8.33042 8.51005 8.89691 9.01516 9.57821 11.03969 Molecular weight = 255.17amu Principal moments of inertia in cm(-1) A = 0.015146 B = 0.009843 C = 0.008528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.269547 B = 2844.111522 C = 3282.378573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.108 4.108 3 C 0.210 3.790 4 H 0.051 0.949 5 C -0.549 4.549 6 H 0.056 0.944 7 C 0.070 3.930 8 N -0.882 5.882 9 Si 0.886 3.114 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.279 1.279 13 N -0.512 5.512 14 C 0.061 3.939 15 C 0.056 3.944 16 N -0.687 5.687 17 C 0.073 3.927 18 C 0.079 3.921 19 H 0.069 0.931 20 C 0.530 3.470 21 O -0.519 6.519 22 N -0.741 5.741 23 C 0.093 3.907 24 H 0.041 0.959 25 H 0.021 0.979 26 H 0.046 0.954 27 H 0.091 0.909 28 H 0.030 0.970 29 H 0.261 0.739 30 H 0.050 0.950 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.033 0.967 34 H 0.336 0.664 35 H 0.039 0.961 36 H 0.070 0.930 37 H 0.398 0.602 38 H 0.058 0.942 39 H 0.053 0.947 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.190 8.443 7.151 11.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.146 4.146 3 C 0.104 3.896 4 H 0.069 0.931 5 C -0.588 4.588 6 H 0.074 0.926 7 C -0.133 4.133 8 N -0.520 5.520 9 Si 0.714 3.286 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.238 5.238 14 C -0.067 4.067 15 C -0.073 4.073 16 N -0.318 5.318 17 C -0.057 4.057 18 C -0.034 4.034 19 H 0.087 0.913 20 C 0.315 3.685 21 O -0.393 6.393 22 N -0.395 5.395 23 C -0.052 4.052 24 H 0.060 0.940 25 H 0.040 0.960 26 H 0.065 0.935 27 H 0.109 0.891 28 H 0.049 0.951 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.051 0.949 34 H 0.153 0.847 35 H 0.057 0.943 36 H 0.089 0.911 37 H 0.231 0.769 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.878 7.827 6.363 10.490 hybrid contribution 1.543 0.259 0.076 1.566 sum -1.336 8.086 6.439 10.422 Atomic orbital electron populations 1.21656 0.98620 0.97871 1.00992 1.21563 0.92483 0.98938 1.01637 1.19405 0.92702 0.91559 0.85900 0.93131 1.21744 0.92915 1.38597 1.05512 0.92564 1.24895 0.97629 0.95063 0.95665 1.69884 1.34788 1.37995 1.09328 0.86767 0.86381 0.78148 0.77325 1.20307 1.21325 1.20439 1.62505 1.57010 0.98856 1.05396 1.22031 0.97986 0.98137 0.88578 1.22133 0.98557 0.87788 0.98847 1.60465 1.62178 1.03904 1.05233 1.21837 0.96675 0.97067 0.90169 1.21336 0.98702 0.92141 0.91187 0.91325 1.20481 0.84844 0.79058 0.84082 1.90660 1.23929 1.60514 1.64155 1.45814 1.28742 1.31005 1.33913 1.21411 0.97238 0.97567 0.88970 0.94030 0.95964 0.93467 0.89082 0.95139 0.92882 0.93220 0.90401 0.91156 0.94894 0.84700 0.94293 0.91114 0.76908 0.92365 0.92870 0.91359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 9.80 37.15 0.36 -2.65 16 2 C -0.11 -2.68 5.14 -26.73 -0.14 -2.82 16 3 C 0.21 5.32 1.38 -68.87 -0.09 5.23 16 4 H 0.05 1.48 5.97 -51.93 -0.31 1.17 16 5 C -0.55 -14.62 7.15 -34.44 -0.25 -14.86 16 6 H 0.06 1.50 5.80 -52.49 -0.30 1.19 16 7 C 0.07 1.92 5.29 -17.82 -0.09 1.82 16 8 N -0.88 -25.16 11.29 55.43 0.63 -24.53 16 9 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 N -0.51 -11.11 3.68 -221.33 -0.82 -11.93 16 14 C 0.06 1.20 4.96 -3.77 -0.02 1.18 16 15 C 0.06 0.88 6.72 -3.77 -0.03 0.85 16 16 N -0.69 -10.04 6.90 -113.63 -0.78 -10.83 16 17 C 0.07 1.15 5.98 -3.76 -0.02 1.12 16 18 C 0.08 1.54 2.10 -68.81 -0.14 1.40 16 19 H 0.07 1.42 7.10 -51.93 -0.37 1.05 16 20 C 0.53 10.65 5.85 -10.98 -0.06 10.58 16 21 O -0.52 -12.36 15.42 5.55 0.09 -12.28 16 22 N -0.74 -11.82 5.71 -67.08 -0.38 -12.20 16 23 C 0.09 1.28 10.70 59.85 0.64 1.92 16 24 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.05 1.04 7.75 -51.93 -0.40 0.64 16 27 H 0.09 2.51 5.95 -51.93 -0.31 2.20 16 28 H 0.03 0.72 6.22 -51.93 -0.32 0.40 16 29 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.05 1.07 6.33 -51.93 -0.33 0.74 16 31 H 0.08 1.56 6.18 -51.93 -0.32 1.23 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.34 3.91 8.90 -39.29 -0.35 3.56 16 35 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.40 5.22 8.83 -40.82 -0.36 4.86 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 309.59 15.07 4.67 4.67 Total: -1.00 -31.39 309.59 -7.79 -39.17 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -6.32 Total: 8.11 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: 0.16 Total: 3.77 kcal Atomic # 7 Polarization: -58.13 SS G_CDS: -1.36 Total: -59.49 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: 0.09 Total: -12.28 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.39 -7.79 -39.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084212107.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.981 kcal (2) G-P(sol) polarization free energy of solvation -31.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds