Wall clock time and date at job start Mon Mar 30 2020 05:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00290 * 2 1 4 4 H 1.48500 * 109.46865 * 270.00143 * 3 2 1 5 5 H 1.48507 * 109.47143 * 29.99640 * 3 2 1 6 6 H 1.48501 * 109.47388 * 149.99972 * 3 2 1 7 7 C 1.37880 * 119.99477 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99402 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00081 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47051 * 179.97438 * 9 7 2 11 11 N 1.46498 * 109.47203 * 180.02562 * 10 9 7 12 12 C 1.34785 * 119.99915 * 180.02562 * 11 10 9 13 13 O 1.21278 * 119.99945 * 0.02562 * 12 11 10 14 14 C 1.50704 * 119.99766 * 180.27886 * 12 11 10 15 15 N 1.46892 * 109.46817 * 173.45745 * 14 12 11 16 16 C 1.46849 * 110.99933 * 169.39897 * 15 14 12 17 17 C 1.53034 * 109.52467 * 185.83725 * 16 15 14 18 18 C 1.53122 * 109.28160 * 300.82164 * 17 16 15 19 19 N 1.46902 * 109.57608 * 177.58984 * 18 17 16 20 20 C 1.53114 * 109.15966 * 57.65062 * 18 17 16 21 21 C 1.46846 * 111.00437 * 293.60602 * 15 14 12 22 22 H 0.97005 * 119.99795 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46838 * 60.00481 * 9 7 2 24 24 H 1.08995 * 109.47524 * 300.00146 * 9 7 2 25 25 H 1.08997 * 109.47273 * 59.99977 * 10 9 7 26 26 H 1.09009 * 109.47228 * 300.00410 * 10 9 7 27 27 H 0.96995 * 120.00172 * 0.02562 * 11 10 9 28 28 H 1.08999 * 109.46572 * 293.45373 * 14 12 11 29 29 H 1.08996 * 109.47088 * 53.45458 * 14 12 11 30 30 H 1.08999 * 109.46036 * 305.85611 * 16 15 14 31 31 H 1.08997 * 109.46507 * 65.82158 * 16 15 14 32 32 H 1.09002 * 109.50874 * 180.87527 * 17 16 15 33 33 H 1.09006 * 109.50306 * 60.76217 * 17 16 15 34 34 H 1.08996 * 109.51674 * 297.74562 * 18 17 16 35 35 H 1.00905 * 110.99727 * 60.28422 * 19 18 17 36 36 H 1.00894 * 110.99650 * 184.23888 * 19 18 17 37 37 H 1.09000 * 109.50164 * 182.40575 * 20 18 17 38 38 H 1.09008 * 109.50334 * 62.29216 * 20 18 17 39 39 H 1.09001 * 109.45959 * 294.18278 * 21 15 14 40 40 H 1.09002 * 109.45946 * 54.15324 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0017 10 6 2.2450 -3.6621 0.0015 11 7 1.5125 -4.9308 0.0020 12 6 2.1864 -6.0981 0.0024 13 8 3.3991 -6.0981 0.0028 14 6 1.4328 -7.4032 -0.0034 15 7 2.3801 -8.5148 -0.1596 16 6 1.7214 -9.8052 0.0802 17 6 2.7644 -10.9248 0.0528 18 6 3.4623 -10.9324 -1.3100 19 7 4.5048 -11.9673 -1.3234 20 6 4.0988 -9.5617 -1.5563 21 6 3.0172 -8.4817 -1.4822 22 1 -0.4850 0.8401 0.0004 23 1 0.6239 -2.5574 -0.8881 24 1 0.6245 -2.5563 0.8919 25 1 2.8724 -3.6040 0.8909 26 1 2.8711 -3.6048 -0.8891 27 1 0.5425 -4.9308 0.0020 28 1 0.8930 -7.5151 0.9369 29 1 0.7246 -7.4101 -0.8320 30 1 1.2326 -9.7879 1.0543 31 1 0.9773 -9.9830 -0.6961 32 1 2.2730 -11.8841 0.2154 33 1 3.5012 -10.7550 0.8381 34 1 2.7321 -11.1408 -2.0919 35 1 4.1088 -12.8814 -1.1629 36 1 5.0251 -11.9452 -2.1876 37 1 4.5607 -9.5471 -2.5435 38 1 4.8566 -9.3705 -0.7965 39 1 2.2670 -8.6656 -2.2513 40 1 3.4696 -7.5031 -1.6430 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086206245.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:05 Heat of formation + Delta-G solvation = -47.079762 kcal Electronic energy + Delta-G solvation = -18819.158130 eV Core-core repulsion = 15860.931810 eV Total energy + Delta-G solvation = -2958.226320 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.169 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.83463 -38.44142 -35.25044 -34.63541 -32.83382 -30.99935 -30.89400 -29.58663 -26.72932 -24.44163 -23.37276 -22.46380 -20.94621 -19.98965 -19.78605 -16.82582 -16.33323 -16.14844 -15.85468 -15.50557 -15.36272 -14.78342 -14.61544 -14.48737 -14.07177 -13.37914 -13.28424 -13.05036 -12.81953 -12.29794 -12.14627 -11.87837 -11.43354 -11.28726 -11.19853 -11.03122 -10.87757 -10.64034 -10.51305 -10.28384 -9.74738 -9.42817 -9.15046 -8.97870 -8.52709 -8.37906 -8.29165 -6.09595 -4.12273 3.06060 3.29513 3.35219 3.38001 3.43431 4.02905 4.17566 4.42226 4.58395 4.68081 4.96469 5.01427 5.12838 5.18749 5.26848 5.27554 5.35979 5.39880 5.45136 5.57643 5.66822 5.78312 5.98978 6.05493 6.24989 6.35010 6.36872 6.75571 6.85426 6.90875 6.96520 7.00818 7.14143 7.52547 7.62107 7.89092 8.06483 8.28778 8.72800 8.94013 9.52609 11.02055 Molecular weight = 255.17amu Principal moments of inertia in cm(-1) A = 0.058630 B = 0.003162 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.452839 B = 8852.520643 C = 9146.685305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.124 3.876 11 N -0.726 5.726 12 C 0.504 3.496 13 O -0.531 6.531 14 C 0.035 3.965 15 N -0.518 5.518 16 C 0.057 3.943 17 C -0.108 4.108 18 C 0.089 3.911 19 N -0.846 5.846 20 C -0.107 4.107 21 C 0.055 3.945 22 H 0.262 0.738 23 H 0.021 0.979 24 H 0.022 0.978 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.396 0.604 28 H 0.103 0.897 29 H 0.059 0.941 30 H 0.078 0.922 31 H 0.031 0.969 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.029 0.971 35 H 0.338 0.662 36 H 0.340 0.660 37 H 0.062 0.938 38 H 0.083 0.917 39 H 0.025 0.975 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.921 -22.279 -2.848 22.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.560 4.560 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.001 3.999 11 N -0.377 5.377 12 C 0.288 3.712 13 O -0.408 6.408 14 C -0.096 4.096 15 N -0.243 5.243 16 C -0.071 4.071 17 C -0.146 4.146 18 C -0.022 4.022 19 N -0.376 5.376 20 C -0.145 4.145 21 C -0.073 4.073 22 H 0.071 0.929 23 H 0.040 0.960 24 H 0.041 0.959 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.229 0.771 28 H 0.121 0.879 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.049 0.951 32 H 0.081 0.919 33 H 0.101 0.899 34 H 0.046 0.954 35 H 0.151 0.849 36 H 0.153 0.847 37 H 0.081 0.919 38 H 0.102 0.898 39 H 0.043 0.957 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.335 -21.698 -1.869 21.903 hybrid contribution -1.367 0.484 -1.447 2.049 sum 0.967 -21.214 -3.316 21.494 Atomic orbital electron populations 1.69957 1.06101 1.26863 1.50468 1.25001 0.94896 0.99426 0.94997 0.86511 0.79867 0.82983 0.78195 1.20568 1.21164 1.19695 1.21064 0.93266 0.90420 1.51247 0.92246 1.19318 0.94211 0.91164 0.97780 1.21687 0.95982 0.81500 1.00705 1.46337 1.10443 1.06551 1.74361 1.20400 0.88472 0.85151 0.77135 1.90665 1.13734 1.87410 1.48942 1.21987 0.94112 0.90399 1.03081 1.61539 1.30717 1.01172 1.30860 1.22092 0.95210 0.88829 1.00962 1.21576 0.98194 0.97075 0.97750 1.21418 0.91999 0.92356 0.96464 1.58695 1.28744 1.07692 1.42456 1.21567 0.98507 0.92363 1.02085 1.22186 0.96077 1.01169 0.87896 0.92856 0.96028 0.95946 0.92592 0.92717 0.77071 0.87905 0.92330 0.90322 0.95109 0.91876 0.89947 0.95350 0.84942 0.84703 0.91948 0.89828 0.95660 0.88756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.18 13.29 55.43 0.74 -25.45 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.52 -14.52 9.11 -34.44 -0.31 -14.83 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 9 C 0.01 0.31 5.09 -27.89 -0.14 0.17 16 10 C 0.12 2.64 5.61 -4.04 -0.02 2.61 16 11 N -0.73 -12.52 5.56 -60.29 -0.33 -12.85 16 12 C 0.50 8.47 7.36 -10.98 -0.08 8.39 16 13 O -0.53 -10.96 14.71 5.56 0.08 -10.88 16 14 C 0.04 0.44 5.45 -4.98 -0.03 0.41 16 15 N -0.52 -6.55 4.35 -236.13 -1.03 -7.58 16 16 C 0.06 0.56 5.46 -3.83 -0.02 0.54 16 17 C -0.11 -0.99 5.68 -26.65 -0.15 -1.15 16 18 C 0.09 0.82 3.31 -67.59 -0.22 0.60 16 19 N -0.85 -6.80 9.25 -4.56 -0.04 -6.84 16 20 C -0.11 -1.19 5.64 -26.66 -0.15 -1.34 16 21 C 0.05 0.69 5.12 -3.84 -0.02 0.67 16 22 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 23 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 26 H 0.05 1.21 8.14 -51.92 -0.42 0.79 16 27 H 0.40 5.83 8.47 -40.82 -0.35 5.48 16 28 H 0.10 1.07 7.98 -51.93 -0.41 0.66 16 29 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16 30 H 0.08 0.68 8.01 -51.93 -0.42 0.27 16 31 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.34 2.13 9.04 -39.29 -0.36 1.77 16 36 H 0.34 2.32 8.99 -39.30 -0.35 1.97 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.08 1.11 8.14 -51.92 -0.42 0.69 16 39 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.09 1.45 6.06 -51.93 -0.31 1.14 16 LS Contribution 323.58 15.07 4.88 4.88 Total: -1.00 -31.98 323.58 -8.79 -40.77 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -6.81 Total: 3.91 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: -1.25 Total: -2.38 kcal Atomic # 7 Polarization: -52.05 SS G_CDS: -0.67 Total: -52.72 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.08 Total: -10.88 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.98 -8.79 -40.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086206245.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.311 kcal (2) G-P(sol) polarization free energy of solvation -31.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds