Wall clock time and date at job start Mon Mar 30 2020 05:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47082 * 2 1 4 4 C 1.52996 * 109.47594 * 239.99461 * 2 1 3 5 5 N 1.46903 * 109.46892 * 53.21263 * 4 2 1 6 6 C 1.46903 * 110.99973 * 205.19215 * 5 4 2 7 7 C 1.50702 * 109.47332 * 163.19516 * 6 5 4 8 8 H 1.08000 * 119.99528 * 4.46348 * 7 6 5 9 9 C 1.37868 * 120.00052 * 184.46203 * 7 6 5 10 10 N 1.31513 * 120.00115 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99912 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.46922 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.46906 * 120.00477 * 11 9 7 14 14 H 1.48502 * 109.46887 * 240.00351 * 11 9 7 15 15 C 1.46899 * 111.00053 * 81.23651 * 5 4 2 16 16 C 1.53001 * 117.49765 * 128.02583 * 15 5 4 17 17 C 1.53008 * 117.49682 * 59.36777 * 15 5 4 18 18 C 1.50709 * 109.46929 * 119.99414 * 2 1 3 19 19 O 1.21278 * 119.99716 * 119.99842 * 18 2 1 20 20 N 1.34776 * 119.99988 * 299.72813 * 18 2 1 21 21 N 1.36599 * 120.00089 * 179.97438 * 20 18 2 22 22 H 1.08997 * 109.46943 * 300.00439 * 1 2 3 23 23 H 1.08997 * 109.46415 * 60.00704 * 1 2 3 24 24 H 1.08998 * 109.46943 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47154 * 190.40986 * 3 2 1 26 26 H 1.08996 * 109.47318 * 310.40639 * 3 2 1 27 27 H 1.08997 * 109.47827 * 70.41251 * 3 2 1 28 28 H 1.08996 * 109.47232 * 173.21610 * 4 2 1 29 29 H 1.09003 * 109.47276 * 293.21554 * 4 2 1 30 30 H 1.09003 * 109.47024 * 283.19979 * 6 5 4 31 31 H 1.09005 * 109.46824 * 43.19279 * 6 5 4 32 32 H 0.97005 * 120.00256 * 179.97438 * 10 9 7 33 33 H 1.08992 * 115.54849 * 273.69712 * 15 5 4 34 34 H 1.09002 * 117.49854 * 0.02562 * 16 15 5 35 35 H 1.09000 * 117.49589 * 145.02067 * 16 15 5 36 36 H 1.08998 * 117.49714 * 214.97760 * 17 15 5 37 37 H 1.08998 * 117.49851 * 359.97438 * 17 15 5 38 38 H 0.97001 * 120.00204 * 0.02562 * 20 18 2 39 39 H 1.00894 * 111.00232 * 180.02562 * 21 20 18 40 40 H 1.00901 * 110.99707 * 303.95824 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 1.4214 -0.1299 -2.4430 6 6 1.3826 -1.0958 -3.5491 7 6 0.4010 -0.6264 -4.5918 8 1 -0.0861 0.3313 -4.4825 9 6 0.1248 -1.4195 -5.6852 10 7 0.7175 -2.5859 -5.8180 11 14 -1.0914 -0.8373 -6.9780 12 1 -1.6156 0.4992 -6.5981 13 1 -0.4090 -0.7453 -8.2937 14 1 -2.2160 -1.8027 -7.0700 15 6 2.1181 1.1002 -2.8425 16 6 2.5777 1.2110 -4.2976 17 6 3.6053 0.9903 -3.1847 18 6 2.0324 -0.7103 1.2306 19 8 2.7296 -1.6964 1.1194 20 7 1.7113 -0.2465 2.4547 21 7 2.1661 -0.8907 3.5701 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5137 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 3.1141 1.4481 -0.1857 26 1 1.5331 2.0070 -0.7825 27 1 1.8364 1.8999 0.9681 28 1 3.1233 -0.6174 -1.3118 29 1 1.7794 -1.7781 -1.1904 30 1 2.3741 -1.1783 -3.9944 31 1 1.0723 -2.0697 -3.1703 32 1 0.5229 -3.1441 -6.5872 33 1 1.7809 2.0123 -2.3503 34 1 2.3627 0.3713 -4.9586 35 1 2.5432 2.1962 -4.7626 36 1 4.2465 1.8305 -2.9181 37 1 4.0669 0.0055 -3.1131 38 1 1.1566 0.5442 2.5436 39 1 1.8460 -0.4307 4.4091 40 1 1.8925 -1.8619 3.5636 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086597900.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:03 Heat of formation + Delta-G solvation = 25.411909 kcal Electronic energy + Delta-G solvation = -20151.258737 eV Core-core repulsion = 17196.175892 eV Total energy + Delta-G solvation = -2955.082845 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.169 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.19668 -38.33705 -35.80169 -35.02683 -32.96308 -31.60058 -28.97743 -27.29386 -27.03701 -25.06834 -22.68960 -22.32725 -21.38453 -19.81086 -18.81459 -17.52244 -16.65849 -16.21002 -15.96098 -15.43350 -14.89366 -14.39567 -14.24678 -13.89249 -13.56318 -13.12826 -12.91697 -12.37759 -12.04996 -11.79749 -11.57770 -11.40908 -11.24191 -11.09720 -10.93004 -10.78460 -10.72749 -10.38911 -10.15740 -9.85545 -9.66967 -9.54360 -9.25678 -9.03845 -8.41995 -8.22808 -7.19796 -5.99712 -3.99316 2.81178 2.85533 3.32064 3.40114 3.44393 4.42025 4.55637 4.70816 4.90814 4.95928 5.11373 5.27013 5.36751 5.43739 5.64499 5.70427 5.73513 5.80750 5.97226 6.06604 6.17467 6.26202 6.28404 6.38243 6.48752 6.54980 6.65649 6.71498 6.80320 7.18362 7.26069 7.28406 7.43771 7.51185 7.85626 8.12832 8.24010 8.51508 8.57384 9.08317 9.62715 11.10585 Molecular weight = 255.17amu Principal moments of inertia in cm(-1) A = 0.029196 B = 0.005592 C = 0.005264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.794139 B = 5006.348796 C = 5317.807941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.064 4.064 3 C -0.141 4.141 4 C 0.079 3.921 5 N -0.501 5.501 6 C 0.188 3.812 7 C -0.493 4.493 8 H 0.065 0.935 9 C 0.053 3.947 10 N -0.899 5.899 11 Si 0.894 3.106 12 H -0.272 1.272 13 H -0.286 1.286 14 H -0.286 1.286 15 C 0.031 3.969 16 C -0.174 4.174 17 C -0.230 4.230 18 C 0.527 3.473 19 O -0.528 6.528 20 N -0.583 5.583 21 N -0.605 5.605 22 H 0.039 0.961 23 H 0.092 0.908 24 H 0.054 0.946 25 H 0.058 0.942 26 H 0.082 0.918 27 H 0.046 0.954 28 H 0.040 0.960 29 H 0.073 0.927 30 H -0.004 1.004 31 H 0.031 0.969 32 H 0.260 0.740 33 H 0.110 0.890 34 H 0.134 0.866 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.399 0.601 39 H 0.352 0.648 40 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.169 8.405 14.389 16.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.070 4.070 3 C -0.198 4.198 4 C -0.050 4.050 5 N -0.223 5.223 6 C 0.063 3.937 7 C -0.532 4.532 8 H 0.083 0.917 9 C -0.148 4.148 10 N -0.539 5.539 11 Si 0.722 3.278 12 H -0.197 1.197 13 H -0.212 1.212 14 H -0.212 1.212 15 C -0.078 4.078 16 C -0.211 4.211 17 C -0.270 4.270 18 C 0.313 3.687 19 O -0.401 6.401 20 N -0.330 5.330 21 N -0.231 5.231 22 H 0.058 0.942 23 H 0.111 0.889 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.101 0.899 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.091 0.909 30 H 0.014 0.986 31 H 0.049 0.951 32 H 0.070 0.930 33 H 0.127 0.873 34 H 0.152 0.848 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.236 0.764 39 H 0.165 0.835 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.903 7.813 14.016 16.072 hybrid contribution -1.054 0.126 -0.409 1.137 sum -0.150 7.939 13.607 15.755 Atomic orbital electron populations 1.21737 0.91828 1.02514 1.02438 1.20695 0.97882 0.96324 0.92059 1.22089 1.01830 0.94094 1.01768 1.21866 0.96630 0.97755 0.88764 1.62031 1.48806 1.05702 1.05800 1.19890 0.96055 0.90319 0.87460 1.21146 1.23657 1.03994 1.04382 0.91676 1.24977 0.96514 0.94917 0.98363 1.69973 1.43254 1.10750 1.29875 0.86497 0.81084 0.78778 0.81403 1.19663 1.21238 1.21194 1.22813 0.91119 0.95383 0.98496 1.23576 1.00768 1.03956 0.92776 1.23341 0.94088 1.01827 1.07723 1.20862 0.79903 0.84773 0.83193 1.90691 1.36642 1.26536 1.86249 1.44864 1.54844 1.30454 1.02844 1.59975 1.60978 1.05654 0.96446 0.94177 0.88915 0.92650 0.92275 0.89899 0.93520 0.94220 0.90859 0.98584 0.95101 0.93035 0.87266 0.84812 0.90290 0.90224 0.89680 0.76354 0.83540 0.84151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.74 8.12 37.16 0.30 -1.44 16 2 C -0.06 -0.95 0.70 -155.66 -0.11 -1.05 16 3 C -0.14 -1.74 7.34 37.15 0.27 -1.47 16 4 C 0.08 1.48 3.54 -3.82 -0.01 1.47 16 5 N -0.50 -10.19 3.51 -228.08 -0.80 -10.99 16 6 C 0.19 4.72 4.26 -4.97 -0.02 4.70 16 7 C -0.49 -13.18 6.78 -34.44 -0.23 -13.41 16 8 H 0.07 1.74 7.79 -52.49 -0.41 1.33 16 9 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 10 N -0.90 -26.32 13.29 55.43 0.74 -25.58 16 11 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 12 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 13 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 14 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 15 C 0.03 0.57 4.59 -67.71 -0.31 0.26 16 16 C -0.17 -3.38 8.86 -26.69 -0.24 -3.62 16 17 C -0.23 -4.07 9.05 -26.69 -0.24 -4.31 16 18 C 0.53 8.04 6.55 -10.98 -0.07 7.97 16 19 O -0.53 -10.37 16.10 5.56 0.09 -10.28 16 20 N -0.58 -6.46 6.18 31.22 0.19 -6.26 16 21 N -0.60 -6.02 10.03 60.35 0.61 -5.41 16 22 H 0.04 0.41 7.58 -51.93 -0.39 0.01 16 23 H 0.09 1.42 7.43 -51.93 -0.39 1.03 16 24 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.06 0.79 8.06 -51.93 -0.42 0.37 16 26 H 0.08 1.04 5.28 -51.93 -0.27 0.76 16 27 H 0.05 0.45 7.28 -51.93 -0.38 0.07 16 28 H 0.04 0.78 6.54 -51.93 -0.34 0.44 16 29 H 0.07 1.55 7.28 -51.93 -0.38 1.17 16 30 H 0.00 -0.10 6.05 -51.93 -0.31 -0.41 16 31 H 0.03 0.86 7.62 -51.93 -0.40 0.47 16 32 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 33 H 0.11 1.76 5.74 -51.93 -0.30 1.46 16 34 H 0.13 3.13 4.88 -51.93 -0.25 2.88 16 35 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.08 1.65 7.27 -51.93 -0.38 1.27 16 38 H 0.40 3.19 7.58 -185.16 -1.40 1.79 16 39 H 0.35 2.08 9.21 -181.37 -1.67 0.41 16 40 H 0.34 3.47 9.01 -181.36 -1.63 1.83 16 LS Contribution 312.53 15.07 4.71 4.71 Total: -1.00 -31.94 312.53 -9.97 -41.91 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -9.72 Total: 5.19 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: -0.76 Total: -9.52 kcal Atomic # 7 Polarization: -48.99 SS G_CDS: 0.73 Total: -48.25 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.09 Total: -10.28 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.94 -9.97 -41.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086597900.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.324 kcal (2) G-P(sol) polarization free energy of solvation -31.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds