Wall clock time and date at job start Mon Mar 30 2020 05:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47082 * 2 1 4 4 C 1.52996 * 109.47594 * 239.99461 * 2 1 3 5 5 N 1.46903 * 109.46892 * 53.21263 * 4 2 1 6 6 C 1.46903 * 110.99973 * 205.19215 * 5 4 2 7 7 C 1.50702 * 109.47332 * 163.19516 * 6 5 4 8 8 H 1.08000 * 119.99528 * 4.46348 * 7 6 5 9 9 C 1.37868 * 120.00052 * 184.46203 * 7 6 5 10 10 N 1.31513 * 120.00115 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99912 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.46922 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.46906 * 120.00477 * 11 9 7 14 14 H 1.48502 * 109.46887 * 240.00351 * 11 9 7 15 15 C 1.46899 * 111.00053 * 81.23651 * 5 4 2 16 16 C 1.53001 * 117.49765 * 128.02583 * 15 5 4 17 17 C 1.53008 * 117.49682 * 59.36777 * 15 5 4 18 18 C 1.50709 * 109.46929 * 119.99414 * 2 1 3 19 19 O 1.21278 * 119.99716 * 119.99842 * 18 2 1 20 20 N 1.34776 * 119.99988 * 299.72813 * 18 2 1 21 21 N 1.36599 * 120.00089 * 179.97438 * 20 18 2 22 22 H 1.08997 * 109.46943 * 300.00439 * 1 2 3 23 23 H 1.08997 * 109.46415 * 60.00704 * 1 2 3 24 24 H 1.08998 * 109.46943 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47154 * 190.40986 * 3 2 1 26 26 H 1.08996 * 109.47318 * 310.40639 * 3 2 1 27 27 H 1.08997 * 109.47827 * 70.41251 * 3 2 1 28 28 H 1.08996 * 109.47232 * 173.21610 * 4 2 1 29 29 H 1.09003 * 109.47276 * 293.21554 * 4 2 1 30 30 H 1.09003 * 109.47024 * 283.19979 * 6 5 4 31 31 H 1.09005 * 109.46824 * 43.19279 * 6 5 4 32 32 H 0.97005 * 120.00256 * 179.97438 * 10 9 7 33 33 H 1.08992 * 115.54849 * 273.69712 * 15 5 4 34 34 H 1.09002 * 117.49854 * 0.02562 * 16 15 5 35 35 H 1.09000 * 117.49589 * 145.02067 * 16 15 5 36 36 H 1.08998 * 117.49714 * 214.97760 * 17 15 5 37 37 H 1.08998 * 117.49851 * 359.97438 * 17 15 5 38 38 H 0.97001 * 120.00204 * 0.02562 * 20 18 2 39 39 H 1.00894 * 111.00232 * 180.02562 * 21 20 18 40 40 H 1.00901 * 110.99707 * 303.95824 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 1.4214 -0.1299 -2.4430 6 6 1.3826 -1.0958 -3.5491 7 6 0.4010 -0.6264 -4.5918 8 1 -0.0861 0.3313 -4.4825 9 6 0.1248 -1.4195 -5.6852 10 7 0.7175 -2.5859 -5.8180 11 14 -1.0914 -0.8373 -6.9780 12 1 -1.6156 0.4992 -6.5981 13 1 -0.4090 -0.7453 -8.2937 14 1 -2.2160 -1.8027 -7.0700 15 6 2.1181 1.1002 -2.8425 16 6 2.5777 1.2110 -4.2976 17 6 3.6053 0.9903 -3.1847 18 6 2.0324 -0.7103 1.2306 19 8 2.7296 -1.6964 1.1194 20 7 1.7113 -0.2465 2.4547 21 7 2.1661 -0.8907 3.5701 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5137 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 3.1141 1.4481 -0.1857 26 1 1.5331 2.0070 -0.7825 27 1 1.8364 1.8999 0.9681 28 1 3.1233 -0.6174 -1.3118 29 1 1.7794 -1.7781 -1.1904 30 1 2.3741 -1.1783 -3.9944 31 1 1.0723 -2.0697 -3.1703 32 1 0.5229 -3.1441 -6.5872 33 1 1.7809 2.0123 -2.3503 34 1 2.3627 0.3713 -4.9586 35 1 2.5432 2.1962 -4.7626 36 1 4.2465 1.8305 -2.9181 37 1 4.0669 0.0055 -3.1131 38 1 1.1566 0.5442 2.5436 39 1 1.8460 -0.4307 4.4091 40 1 1.8925 -1.8619 3.5636 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086597900.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:02 Heat of formation + Delta-G solvation = 1.179618 kcal Electronic energy + Delta-G solvation = -20152.309528 eV Core-core repulsion = 17196.175892 eV Total energy + Delta-G solvation = -2956.133636 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.169 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.43295 -39.85023 -36.87015 -36.34061 -34.97287 -33.29145 -30.14558 -28.99213 -28.17628 -26.56853 -24.63667 -23.62474 -22.84292 -21.03368 -20.33089 -18.69916 -18.19277 -17.80399 -17.54746 -16.73497 -16.39490 -15.99625 -15.54928 -15.16209 -14.96146 -14.47455 -14.37660 -14.23243 -13.47636 -13.19578 -13.02840 -12.83628 -12.67088 -12.63355 -12.56884 -12.22176 -12.10337 -11.95538 -11.86305 -11.58338 -11.24920 -11.18355 -10.88921 -10.58301 -10.51500 -9.13579 -8.93292 -8.13357 -6.20439 1.43685 1.44618 1.57823 1.63244 1.88214 2.44577 3.04707 3.18879 3.31625 3.64744 3.83719 4.03115 4.17293 4.19300 4.22018 4.28461 4.31867 4.65863 4.79206 4.82910 4.85106 4.95351 5.01678 5.10610 5.13602 5.17075 5.23307 5.30816 5.49054 5.56724 5.66620 5.73323 5.74853 6.10677 6.28947 6.41800 6.61162 6.66315 6.93998 7.46344 7.53559 8.97858 Molecular weight = 255.17amu Principal moments of inertia in cm(-1) A = 0.029196 B = 0.005592 C = 0.005264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.794139 B = 5006.348796 C = 5317.807941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.056 4.056 3 C -0.136 4.136 4 C 0.084 3.916 5 N -0.495 5.495 6 C 0.205 3.795 7 C -0.490 4.490 8 H 0.069 0.931 9 C -0.003 4.003 10 N -0.941 5.941 11 Si 0.965 3.035 12 H -0.257 1.257 13 H -0.284 1.284 14 H -0.285 1.285 15 C 0.031 3.969 16 C -0.188 4.188 17 C -0.214 4.214 18 C 0.524 3.476 19 O -0.583 6.583 20 N -0.560 5.560 21 N -0.616 5.616 22 H 0.085 0.915 23 H 0.078 0.922 24 H 0.033 0.967 25 H 0.050 0.950 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.026 0.974 29 H 0.035 0.965 30 H -0.033 1.033 31 H -0.010 1.010 32 H 0.261 0.739 33 H 0.149 0.851 34 H 0.088 0.912 35 H 0.107 0.893 36 H 0.117 0.883 37 H 0.057 0.943 38 H 0.419 0.581 39 H 0.376 0.624 40 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.896 11.791 15.973 19.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.061 4.061 3 C -0.193 4.193 4 C -0.045 4.045 5 N -0.217 5.217 6 C 0.079 3.921 7 C -0.529 4.529 8 H 0.087 0.913 9 C -0.200 4.200 10 N -0.583 5.583 11 Si 0.791 3.209 12 H -0.181 1.181 13 H -0.210 1.210 14 H -0.211 1.211 15 C -0.078 4.078 16 C -0.225 4.225 17 C -0.253 4.253 18 C 0.310 3.690 19 O -0.461 6.461 20 N -0.306 5.306 21 N -0.245 5.245 22 H 0.104 0.896 23 H 0.097 0.903 24 H 0.052 0.948 25 H 0.069 0.931 26 H 0.105 0.895 27 H 0.103 0.897 28 H 0.044 0.956 29 H 0.054 0.946 30 H -0.015 1.015 31 H 0.008 0.992 32 H 0.069 0.931 33 H 0.166 0.834 34 H 0.106 0.894 35 H 0.126 0.874 36 H 0.135 0.865 37 H 0.076 0.924 38 H 0.260 0.740 39 H 0.193 0.807 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -0.195 11.271 15.668 19.302 hybrid contribution -0.660 -0.946 -0.800 1.404 sum -0.855 10.325 14.867 18.121 Atomic orbital electron populations 1.21702 0.90676 1.01650 1.03979 1.20545 0.98587 0.97349 0.89633 1.22074 1.01183 0.91927 1.04146 1.21789 0.95843 0.96485 0.90398 1.62010 1.49792 1.05348 1.04564 1.19496 0.94161 0.89833 0.88606 1.21341 1.23193 1.03837 1.04502 0.91258 1.25873 0.98439 0.94934 1.00722 1.70125 1.45150 1.12265 1.30764 0.85383 0.78422 0.78755 0.78373 1.18087 1.20962 1.21079 1.23128 0.91499 0.95209 0.97973 1.23437 1.02629 1.03653 0.92820 1.23307 0.94089 1.01766 1.06143 1.20857 0.79535 0.84171 0.84482 1.90678 1.39405 1.28914 1.87069 1.44524 1.53538 1.30439 1.02092 1.59867 1.61683 1.06085 0.96887 0.89645 0.90261 0.94785 0.93055 0.89486 0.89740 0.95596 0.94637 1.01500 0.99216 0.93065 0.83448 0.89381 0.87432 0.86494 0.92436 0.74003 0.80705 0.83996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.11 8.12 71.98 0.58 -2.52 16 2 C -0.06 -1.58 0.70 -52.93 -0.04 -1.61 16 3 C -0.14 -2.89 7.34 71.98 0.53 -2.36 16 4 C 0.08 3.29 3.54 86.30 0.31 3.59 16 5 N -0.50 -20.64 3.51 -875.50 -3.08 -23.71 16 6 C 0.21 10.99 4.26 85.56 0.36 11.35 16 7 C -0.49 -26.93 6.78 25.60 0.17 -26.76 16 8 H 0.07 3.69 7.79 -2.91 -0.02 3.67 16 9 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 10 N -0.94 -57.57 13.29 21.44 0.28 -57.28 16 11 Si 0.97 44.12 29.54 68.60 2.03 46.14 16 12 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 13 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 14 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 15 C 0.03 1.08 4.59 44.92 0.21 1.28 16 16 C -0.19 -7.23 8.86 30.62 0.27 -6.96 16 17 C -0.21 -7.38 9.05 30.62 0.28 -7.10 16 18 C 0.52 15.46 6.55 87.66 0.57 16.03 16 19 O -0.58 -23.44 16.10 -3.02 -0.05 -23.49 16 20 N -0.56 -10.76 6.18 -173.53 -1.07 -11.83 16 21 N -0.62 -10.74 10.03 37.02 0.37 -10.36 16 22 H 0.08 1.37 7.58 -2.39 -0.02 1.36 16 23 H 0.08 2.27 7.43 -2.39 -0.02 2.25 16 24 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.05 1.20 8.06 -2.39 -0.02 1.18 16 26 H 0.09 1.79 5.28 -2.39 -0.01 1.78 16 27 H 0.08 1.17 7.28 -2.39 -0.02 1.16 16 28 H 0.03 1.07 6.54 -2.39 -0.02 1.06 16 29 H 0.03 1.63 7.28 -2.39 -0.02 1.61 16 30 H -0.03 -1.90 6.05 -2.39 -0.01 -1.92 16 31 H -0.01 -0.63 7.62 -2.38 -0.02 -0.64 16 32 H 0.26 15.07 8.31 -92.70 -0.77 14.30 16 33 H 0.15 4.16 5.74 -2.39 -0.01 4.15 16 34 H 0.09 4.28 4.88 -2.39 -0.01 4.27 16 35 H 0.11 3.47 8.14 -2.39 -0.02 3.45 16 36 H 0.12 3.19 8.14 -2.39 -0.02 3.17 16 37 H 0.06 2.31 7.27 -2.39 -0.02 2.29 16 38 H 0.42 4.75 7.58 -215.50 -1.63 3.12 16 39 H 0.38 3.19 9.21 -210.57 -1.94 1.25 16 40 H 0.35 6.43 9.01 -210.55 -1.90 4.53 16 Total: -1.00 -74.68 312.53 -2.20 -76.88 By element: Atomic # 1 Polarization: 22.80 SS G_CDS: -4.39 Total: 18.41 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: 3.71 Total: -14.75 kcal Atomic # 7 Polarization: -99.70 SS G_CDS: -3.49 Total: -103.19 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -0.05 Total: -23.49 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.14 kcal Total: -74.68 -2.20 -76.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086597900.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.061 kcal (2) G-P(sol) polarization free energy of solvation -74.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds