Wall clock time and date at job start Mon Mar 30 2020 05:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47405 * 2 1 4 4 C 1.50699 * 109.46952 * 120.00218 * 2 1 3 5 5 O 1.21276 * 120.00743 * 335.96901 * 4 2 1 6 6 N 1.34781 * 120.00075 * 155.97239 * 4 2 1 7 7 C 1.46500 * 120.00435 * 175.17249 * 6 4 2 8 8 C 1.50697 * 109.47253 * 180.02562 * 7 6 4 9 9 H 1.08002 * 120.00027 * 359.97438 * 8 7 6 10 10 C 1.37874 * 120.00029 * 179.97438 * 8 7 6 11 11 N 1.31517 * 119.99998 * 179.97438 * 10 8 7 12 12 Si 1.86796 * 119.99961 * 0.02562 * 10 8 7 13 13 H 1.48505 * 109.47551 * 89.99679 * 12 10 8 14 14 H 1.48504 * 109.47104 * 209.99575 * 12 10 8 15 15 H 1.48497 * 109.46999 * 329.99288 * 12 10 8 16 16 N 1.46901 * 109.46804 * 239.99819 * 2 1 3 17 17 C 1.46956 * 111.00087 * 299.69898 * 16 2 1 18 18 C 1.53053 * 109.36208 * 183.18722 * 17 16 2 19 19 N 1.46957 * 109.36602 * 301.60270 * 18 17 16 20 20 C 1.46956 * 110.88402 * 59.32025 * 19 18 17 21 21 C 1.46957 * 110.99865 * 63.50284 * 16 2 1 22 22 H 1.09000 * 109.46513 * 299.99635 * 1 2 3 23 23 H 1.08995 * 109.47153 * 59.99615 * 1 2 3 24 24 H 1.09003 * 109.47330 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47096 * 180.02562 * 3 2 1 26 26 H 1.09005 * 109.47221 * 300.00309 * 3 2 1 27 27 H 1.09005 * 109.47305 * 60.00010 * 3 2 1 28 28 H 0.97004 * 119.99993 * 355.17303 * 6 4 2 29 29 H 1.09003 * 109.46436 * 299.99774 * 7 6 4 30 30 H 1.08990 * 109.47053 * 59.99908 * 7 6 4 31 31 H 0.97008 * 119.99754 * 180.02562 * 11 10 8 32 32 H 1.08998 * 109.49007 * 303.15598 * 17 16 2 33 33 H 1.08997 * 109.48643 * 63.22876 * 17 16 2 34 34 H 1.09007 * 109.48953 * 181.63232 * 18 17 16 35 35 H 1.08999 * 109.50953 * 61.58178 * 18 17 16 36 36 H 1.00902 * 111.00206 * 183.19130 * 19 18 17 37 37 H 1.08998 * 109.49007 * 180.71333 * 20 19 18 38 38 H 1.08997 * 109.50231 * 60.65285 * 20 19 18 39 39 H 1.08998 * 109.48538 * 296.77690 * 21 16 2 40 40 H 1.08994 * 109.49083 * 56.82079 * 21 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 1.3301 -0.7859 2.2164 6 7 3.2620 -1.2621 1.2353 7 6 3.7920 -1.8597 2.4634 8 6 5.1742 -2.4008 2.2029 9 1 5.6137 -2.3092 1.2206 10 6 5.8776 -3.0129 3.2185 11 7 7.0836 -3.4857 2.9910 12 14 5.1171 -3.1720 4.9172 13 1 4.3643 -4.4491 5.0050 14 1 6.1906 -3.1588 5.9433 15 1 4.1921 -2.0348 5.1539 16 7 2.0196 -0.6925 -1.1994 17 6 1.5543 -2.0862 -1.2297 18 6 2.1493 -2.7934 -2.4497 19 7 1.7477 -2.0803 -3.6703 20 6 2.2130 -0.6867 -3.6400 21 6 1.6180 0.0205 -2.4201 22 1 -0.3632 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 3.1301 1.4423 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.7962 -1.2634 0.4256 29 1 3.8405 -1.1013 3.2448 30 1 3.1384 -2.6707 2.7842 31 1 7.5783 -3.9166 3.7055 32 1 1.8747 -2.5964 -0.3214 33 1 0.4663 -2.1049 -1.2934 34 1 1.7824 -3.8191 -2.4903 35 1 3.2365 -2.7989 -2.3729 36 1 2.0839 -2.5560 -4.4942 37 1 1.8926 -0.1765 -4.5483 38 1 3.3010 -0.6677 -3.5766 39 1 0.5308 0.0257 -2.4971 40 1 1.9845 1.0462 -2.3793 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087638905.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:23 Heat of formation + Delta-G solvation = -25.829624 kcal Electronic energy + Delta-G solvation = -20282.101306 eV Core-core repulsion = 17324.796461 eV Total energy + Delta-G solvation = -2957.304845 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.169 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.34479 -38.17724 -35.43160 -34.28239 -32.28895 -31.25315 -30.82645 -28.08519 -27.22269 -25.54568 -23.82933 -22.67409 -21.20051 -19.92414 -18.87466 -17.60250 -16.60692 -16.02680 -15.41134 -14.99720 -14.81318 -14.56091 -14.40955 -14.18299 -13.83801 -13.66981 -13.17537 -12.80257 -12.43023 -12.35257 -12.10761 -11.96250 -11.78919 -11.73100 -11.35754 -10.99504 -10.96303 -10.91504 -10.76683 -10.61147 -9.95457 -9.46195 -9.10848 -8.74869 -8.63850 -8.27507 -8.05858 -6.19076 -4.20636 3.18076 3.27802 3.34327 3.42827 3.81173 4.00258 4.12564 4.35179 4.80832 4.87267 5.06537 5.12307 5.16379 5.23319 5.29140 5.37584 5.42933 5.46659 5.62014 5.68667 5.77760 5.84940 5.85102 5.89968 5.99279 6.06300 6.19421 6.31450 6.79283 6.82976 6.91356 7.06832 7.09781 7.24390 7.32520 7.43885 8.19142 8.60441 8.78969 9.00852 9.41725 10.92944 Molecular weight = 255.17amu Principal moments of inertia in cm(-1) A = 0.024060 B = 0.006264 C = 0.005483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.489402 B = 4468.720205 C = 5105.517904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.089 3.911 3 C -0.137 4.137 4 C 0.514 3.486 5 O -0.561 6.561 6 N -0.692 5.692 7 C 0.218 3.782 8 C -0.540 4.540 9 H 0.080 0.920 10 C 0.077 3.923 11 N -0.893 5.893 12 Si 0.876 3.124 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.262 1.262 16 N -0.524 5.524 17 C 0.047 3.953 18 C 0.060 3.940 19 N -0.693 5.693 20 C 0.059 3.941 21 C 0.052 3.948 22 H 0.072 0.928 23 H 0.060 0.940 24 H 0.060 0.940 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.405 0.595 29 H 0.023 0.977 30 H 0.019 0.981 31 H 0.267 0.733 32 H 0.086 0.914 33 H 0.046 0.954 34 H 0.079 0.921 35 H 0.046 0.954 36 H 0.342 0.658 37 H 0.076 0.924 38 H 0.041 0.959 39 H 0.045 0.955 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.573 6.568 -13.015 18.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.003 4.003 3 C -0.194 4.194 4 C 0.298 3.702 5 O -0.441 6.441 6 N -0.340 5.340 7 C 0.096 3.904 8 C -0.577 4.577 9 H 0.098 0.902 10 C -0.126 4.126 11 N -0.531 5.531 12 Si 0.702 3.298 13 H -0.199 1.199 14 H -0.209 1.209 15 H -0.186 1.186 16 N -0.251 5.251 17 C -0.081 4.081 18 C -0.070 4.070 19 N -0.325 5.325 20 C -0.071 4.071 21 C -0.076 4.076 22 H 0.091 0.909 23 H 0.078 0.922 24 H 0.079 0.921 25 H 0.090 0.910 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.240 0.760 29 H 0.041 0.959 30 H 0.037 0.963 31 H 0.077 0.923 32 H 0.105 0.895 33 H 0.064 0.936 34 H 0.097 0.903 35 H 0.064 0.936 36 H 0.159 0.841 37 H 0.094 0.906 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.967 6.558 -11.929 17.481 hybrid contribution 0.138 -0.346 0.346 0.508 sum -10.829 6.212 -11.583 17.030 Atomic orbital electron populations 1.22214 0.94727 1.02817 1.02476 1.21302 0.94399 0.95428 0.89202 1.21849 1.02524 0.92709 1.02363 1.20138 0.82426 0.79298 0.88381 1.90646 1.57025 1.60570 1.35809 1.46200 1.15912 1.56423 1.15481 1.19499 0.94487 0.93253 0.83180 1.21090 0.98351 1.38796 0.99508 0.90233 1.24791 0.94590 0.94377 0.98854 1.69887 1.11299 1.38376 1.33493 0.86832 0.79322 0.79615 0.83986 1.19897 1.20942 1.18588 1.62357 1.59193 1.02265 1.01238 1.22311 0.98405 0.88567 0.98824 1.21985 0.98841 0.97061 0.89082 1.60540 1.64074 1.02995 1.04852 1.21988 0.98112 0.89362 0.97636 1.22255 0.98762 0.97801 0.88811 0.90928 0.92159 0.92112 0.91030 0.91607 0.91496 0.75990 0.95917 0.96286 0.92334 0.89532 0.93587 0.90295 0.93619 0.84099 0.90581 0.94026 0.93666 0.89854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 7.30 37.16 0.27 -1.95 16 2 C 0.09 1.31 0.64 -132.76 -0.08 1.23 16 3 C -0.14 -1.73 8.12 37.15 0.30 -1.43 16 4 C 0.51 10.09 5.39 -10.98 -0.06 10.03 16 5 O -0.56 -12.98 16.09 5.56 0.09 -12.89 16 6 N -0.69 -14.53 4.79 -61.48 -0.29 -14.82 16 7 C 0.22 5.46 4.50 -5.19 -0.02 5.43 16 8 C -0.54 -14.95 9.83 -34.44 -0.34 -15.29 16 9 H 0.08 2.31 7.84 -52.49 -0.41 1.90 16 10 C 0.08 2.20 5.47 -17.82 -0.10 2.11 16 11 N -0.89 -26.65 13.96 55.43 0.77 -25.88 16 12 Si 0.88 21.65 27.47 -169.99 -4.67 16.98 16 13 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 14 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 15 H -0.26 -6.44 6.54 56.52 0.37 -6.07 16 16 N -0.52 -6.99 3.76 -220.16 -0.83 -7.82 16 17 C 0.05 0.66 4.84 -3.77 -0.02 0.64 16 18 C 0.06 0.72 6.72 -3.77 -0.03 0.70 16 19 N -0.69 -7.23 6.90 -113.63 -0.78 -8.02 16 20 C 0.06 0.58 6.72 -3.77 -0.03 0.55 16 21 C 0.05 0.56 4.83 -3.77 -0.02 0.54 16 22 H 0.07 1.04 7.87 -51.93 -0.41 0.63 16 23 H 0.06 0.68 6.55 -51.93 -0.34 0.34 16 24 H 0.06 0.88 6.48 -51.93 -0.34 0.54 16 25 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.07 0.66 6.28 -51.93 -0.33 0.33 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.40 8.00 7.64 -40.82 -0.31 7.69 16 29 H 0.02 0.60 7.20 -51.93 -0.37 0.23 16 30 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 31 H 0.27 7.45 8.31 -40.82 -0.34 7.12 16 32 H 0.09 1.42 6.51 -51.93 -0.34 1.08 16 33 H 0.05 0.64 6.49 -51.93 -0.34 0.31 16 34 H 0.08 0.88 8.14 -51.92 -0.42 0.45 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.34 2.93 8.90 -39.29 -0.35 2.58 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.05 0.50 6.56 -51.93 -0.34 0.16 16 40 H 0.08 0.80 6.06 -51.93 -0.31 0.48 16 LS Contribution 307.21 15.07 4.63 4.63 Total: -1.00 -31.27 307.21 -7.49 -38.76 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -6.29 Total: 6.51 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: -0.12 Total: 2.56 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: -1.13 Total: -56.54 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: 0.09 Total: -12.89 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.98 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.27 -7.49 -38.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087638905.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.930 kcal (2) G-P(sol) polarization free energy of solvation -31.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds