Wall clock time and date at job start Mon Mar 30 2020 04:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36934 * 120.00005 * 2 1 4 4 H 1.08008 * 120.00015 * 202.03468 * 3 2 1 5 5 C 1.38811 * 120.00361 * 22.03182 * 3 2 1 6 6 N 1.31620 * 119.99521 * 12.57321 * 5 3 2 7 7 Si 1.86798 * 120.00256 * 192.56681 * 5 3 2 8 8 H 1.48506 * 109.47055 * 90.00425 * 7 5 3 9 9 H 1.48496 * 109.47116 * 210.00282 * 7 5 3 10 10 H 1.48495 * 109.47173 * 330.00739 * 7 5 3 11 11 C 1.46500 * 119.99564 * 180.02562 * 2 1 3 12 12 H 1.09002 * 109.53677 * 179.81965 * 11 2 1 13 13 C 1.53185 * 109.54664 * 299.99861 * 11 2 1 14 14 C 1.53092 * 109.15114 * 176.92038 * 13 11 2 15 15 O 1.42905 * 109.40108 * 302.31425 * 14 13 11 16 16 C 1.42818 * 114.14625 * 61.04414 * 15 14 13 17 17 C 1.53120 * 109.50464 * 178.96913 * 16 15 14 18 18 C 1.53113 * 109.15496 * 296.93605 * 17 16 15 19 19 O 1.42904 * 109.40459 * 302.47793 * 18 17 16 20 20 C 1.42896 * 114.13037 * 61.17740 * 19 18 17 21 21 C 1.53099 * 109.56381 * 59.26329 * 16 15 14 22 22 C 1.53005 * 109.58014 * 299.07797 * 16 15 14 23 23 H 1.08999 * 109.47153 * 274.31897 * 1 2 3 24 24 H 1.09005 * 109.46872 * 34.31502 * 1 2 3 25 25 H 1.08999 * 109.47181 * 154.31449 * 1 2 3 26 26 H 0.97003 * 119.99592 * 179.97438 * 6 5 3 27 27 H 1.09001 * 109.52314 * 57.01483 * 13 11 2 28 28 H 1.09001 * 109.52113 * 296.82072 * 13 11 2 29 29 H 1.08995 * 109.47910 * 182.33739 * 14 13 11 30 30 H 1.08999 * 109.48405 * 62.29709 * 14 13 11 31 31 H 1.08997 * 109.51048 * 177.04743 * 17 16 15 32 32 H 1.08997 * 109.54216 * 56.85002 * 17 16 15 33 33 H 1.08997 * 109.48293 * 182.48998 * 18 17 16 34 34 H 1.09004 * 109.48096 * 62.45466 * 18 17 16 35 35 H 1.09002 * 109.48085 * 58.81365 * 20 19 18 36 36 H 1.08996 * 109.48516 * 178.83891 * 20 19 18 37 37 H 1.08999 * 109.52243 * 303.14057 * 21 16 15 38 38 H 1.09001 * 109.57568 * 182.98155 * 21 16 15 39 39 H 1.09007 * 109.51346 * 177.28997 * 22 16 15 40 40 H 1.08994 * 109.51517 * 297.45276 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1706 1.2200 -0.3509 5 6 1.5317 2.3442 0.4509 6 7 0.3911 2.2701 1.1034 7 14 2.3191 4.0078 0.1319 8 1 1.8295 4.5472 -1.1622 9 1 1.9585 4.9442 1.2266 10 1 3.7951 3.8546 0.0776 11 6 2.1974 -1.2688 -0.0006 12 1 3.2693 -1.0709 -0.0037 13 6 1.8286 -2.0740 1.2493 14 6 2.5389 -3.4293 1.2013 15 8 2.1681 -4.1176 0.0050 16 6 2.5261 -3.4343 -1.1970 17 6 2.1046 -4.2730 -2.4067 18 6 2.8758 -5.5957 -2.3943 19 8 4.2794 -5.3270 -2.4014 20 6 4.7382 -4.5870 -1.2684 21 6 4.0421 -3.2237 -1.2349 22 6 1.8201 -2.0778 -1.2454 23 1 -0.3633 0.0774 1.0247 24 1 -0.3633 0.8489 -0.5794 25 1 -0.3633 -0.9261 -0.4454 26 1 -0.0406 3.0795 1.4189 27 1 0.7500 -2.2288 1.2777 28 1 2.1430 -1.5293 2.1395 29 1 2.2476 -4.0232 2.0675 30 1 3.6179 -3.2749 1.2123 31 1 2.3302 -3.7285 -3.3236 32 1 1.0347 -4.4748 -2.3556 33 1 2.6127 -6.1783 -3.2771 34 1 2.6180 -6.1585 -1.4971 35 1 4.5049 -5.1367 -0.3564 36 1 5.8163 -4.4432 -1.3403 37 1 4.3561 -2.6762 -0.3462 38 1 4.3097 -2.6560 -2.1260 39 1 2.1313 -1.5371 -2.1393 40 1 0.7410 -2.2295 -1.2678 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094375425.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:44 Heat of formation + Delta-G solvation = -74.037252 kcal Electronic energy + Delta-G solvation = -20682.732652 eV Core-core repulsion = 17691.044617 eV Total energy + Delta-G solvation = -2991.688035 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 3.26 seconds Orbital eigenvalues (eV) -40.42422 -37.75831 -35.62107 -33.04727 -32.36991 -31.09057 -29.81319 -28.22551 -26.01656 -24.41814 -23.72785 -22.84957 -22.03059 -19.81433 -18.58539 -16.89924 -16.38820 -15.95751 -15.71998 -15.25253 -14.84633 -14.59647 -14.36572 -13.92457 -13.42113 -12.93044 -12.84196 -12.53899 -12.34704 -12.17836 -11.83224 -11.64415 -11.25918 -10.94936 -10.90658 -10.84851 -10.59789 -10.45766 -10.25295 -10.17162 -10.10927 -9.88640 -9.64541 -9.32126 -8.96418 -8.53152 -6.75849 -5.72222 -3.17803 3.37249 3.43513 3.44736 3.91027 3.99976 4.47066 4.78742 4.91639 5.01455 5.07227 5.30749 5.31821 5.42078 5.45543 5.49593 5.59118 5.68412 5.73236 5.74940 5.79224 5.90530 5.98156 6.06529 6.13047 6.20486 6.26594 6.33665 6.46349 6.62191 6.77243 6.93799 7.01193 7.24017 7.40507 7.55946 7.73530 7.80550 8.39699 9.23922 9.87648 10.37093 11.32522 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.034700 B = 0.005743 C = 0.005500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.723111 B = 4874.561078 C = 5089.859478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.595 5.595 3 C -0.255 4.255 4 H 0.067 0.933 5 C 0.001 3.999 6 N -0.908 5.908 7 Si 0.904 3.096 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.280 1.280 11 C 0.180 3.820 12 H 0.062 0.938 13 C -0.167 4.167 14 C 0.062 3.938 15 O -0.377 6.377 16 C 0.122 3.878 17 C -0.139 4.139 18 C 0.064 3.936 19 O -0.388 6.388 20 C 0.066 3.934 21 C -0.182 4.182 22 C -0.152 4.152 23 H 0.027 0.973 24 H 0.042 0.958 25 H -0.002 1.002 26 H 0.252 0.748 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.047 0.953 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.057 0.943 35 H 0.053 0.947 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.696 -13.697 -3.861 14.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.317 5.317 3 C -0.384 4.384 4 H 0.085 0.915 5 C -0.197 4.197 6 N -0.553 5.553 7 Si 0.735 3.265 8 H -0.215 1.215 9 H -0.218 1.218 10 H -0.205 1.205 11 C 0.071 3.929 12 H 0.080 0.920 13 C -0.207 4.207 14 C -0.015 4.015 15 O -0.297 6.297 16 C 0.082 3.918 17 C -0.177 4.177 18 C -0.012 4.012 19 O -0.307 6.307 20 C -0.010 4.010 21 C -0.220 4.220 22 C -0.191 4.191 23 H 0.046 0.954 24 H 0.060 0.940 25 H 0.017 0.983 26 H 0.062 0.938 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.103 0.897 30 H 0.065 0.935 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.107 0.893 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.107 0.893 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.606 -13.753 -3.936 15.028 hybrid contribution 0.163 1.510 0.249 1.539 sum 4.769 -12.243 -3.687 13.647 Atomic orbital electron populations 1.20746 0.82733 0.95432 0.99163 1.43946 1.01813 1.00138 1.85765 1.19237 0.97737 0.85404 1.36050 0.91490 1.25002 0.97822 0.98431 0.98441 1.70081 1.18476 1.26949 1.39794 0.86255 0.78728 0.84162 0.77402 1.21524 1.21753 1.20539 1.20337 0.95791 0.86114 0.90639 0.92025 1.22771 1.01263 0.95220 1.01419 1.22606 0.98190 0.93976 0.86772 1.87833 1.81757 1.46739 1.13349 1.21376 0.92746 0.92497 0.85167 1.22178 1.01315 0.97054 0.97106 1.22521 0.80876 0.95904 1.01933 1.87865 1.23399 1.74615 1.44772 1.22496 0.98312 0.91256 0.88976 1.22801 0.96549 0.98503 1.04097 1.22695 1.00955 0.94302 1.01181 0.95443 0.93962 0.98320 0.93792 0.91711 0.91160 0.89730 0.93531 0.89959 0.90236 0.89323 0.92503 0.92891 0.89308 0.89910 0.90151 0.91395 0.91412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.08 7.96 59.85 0.48 4.56 16 2 N -0.60 -14.87 2.82 -173.26 -0.49 -15.35 16 3 C -0.25 -6.99 9.60 -15.06 -0.14 -7.13 16 4 H 0.07 1.80 7.81 -52.48 -0.41 1.39 16 5 C 0.00 0.03 5.11 -17.43 -0.09 -0.06 16 6 N -0.91 -26.57 10.63 55.49 0.59 -25.98 16 7 Si 0.90 21.89 29.57 -169.99 -5.03 16.87 16 8 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 9 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 11 C 0.18 3.63 2.37 -67.74 -0.16 3.47 16 12 H 0.06 1.26 6.45 -51.93 -0.33 0.92 16 13 C -0.17 -3.07 5.47 -26.59 -0.15 -3.21 16 14 C 0.06 0.92 6.52 37.21 0.24 1.16 16 15 O -0.38 -5.83 9.20 -35.23 -0.32 -6.15 16 16 C 0.12 1.80 0.68 -90.50 -0.06 1.74 16 17 C -0.14 -1.79 5.15 -26.61 -0.14 -1.92 16 18 C 0.06 0.77 6.70 37.22 0.25 1.02 16 19 O -0.39 -5.24 10.76 -35.23 -0.38 -5.62 16 20 C 0.07 0.82 6.70 37.22 0.25 1.07 16 21 C -0.18 -2.48 4.26 -26.62 -0.11 -2.60 16 22 C -0.15 -2.67 4.24 -26.63 -0.11 -2.78 16 23 H 0.03 0.74 7.41 -51.93 -0.38 0.35 16 24 H 0.04 1.13 7.21 -51.93 -0.37 0.76 16 25 H 0.00 -0.04 6.36 -51.93 -0.33 -0.37 16 26 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 27 H 0.06 1.27 7.59 -51.93 -0.39 0.87 16 28 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 29 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.05 0.64 6.30 -51.93 -0.33 0.32 16 31 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.06 0.69 7.82 -51.93 -0.41 0.29 16 35 H 0.05 0.65 7.82 -51.93 -0.41 0.25 16 36 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.08 1.15 5.03 -51.93 -0.26 0.89 16 38 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 39 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 40 H 0.07 1.26 6.54 -51.93 -0.34 0.92 16 LS Contribution 298.84 15.07 4.50 4.50 Total: -1.00 -29.87 298.84 -7.36 -37.23 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -6.49 Total: -0.82 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: 0.25 Total: -4.68 kcal Atomic # 7 Polarization: -41.43 SS G_CDS: 0.10 Total: -41.33 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: -0.70 Total: -11.77 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.87 -7.36 -37.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094375425.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.808 kcal (2) G-P(sol) polarization free energy of solvation -29.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.26 seconds