Wall clock time and date at job start Mon Mar 30 2020 04:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36934 * 120.00005 * 2 1 4 4 H 1.08008 * 120.00015 * 202.03468 * 3 2 1 5 5 C 1.38811 * 120.00361 * 22.03182 * 3 2 1 6 6 N 1.31620 * 119.99521 * 12.57321 * 5 3 2 7 7 Si 1.86798 * 120.00256 * 192.56681 * 5 3 2 8 8 H 1.48506 * 109.47055 * 90.00425 * 7 5 3 9 9 H 1.48496 * 109.47116 * 210.00282 * 7 5 3 10 10 H 1.48495 * 109.47173 * 330.00739 * 7 5 3 11 11 C 1.46500 * 119.99564 * 180.02562 * 2 1 3 12 12 H 1.09002 * 109.53677 * 179.81965 * 11 2 1 13 13 C 1.53185 * 109.54664 * 299.99861 * 11 2 1 14 14 C 1.53092 * 109.15114 * 176.92038 * 13 11 2 15 15 O 1.42905 * 109.40108 * 302.31425 * 14 13 11 16 16 C 1.42818 * 114.14625 * 61.04414 * 15 14 13 17 17 C 1.53120 * 109.50464 * 178.96913 * 16 15 14 18 18 C 1.53113 * 109.15496 * 296.93605 * 17 16 15 19 19 O 1.42904 * 109.40459 * 302.47793 * 18 17 16 20 20 C 1.42896 * 114.13037 * 61.17740 * 19 18 17 21 21 C 1.53099 * 109.56381 * 59.26329 * 16 15 14 22 22 C 1.53005 * 109.58014 * 299.07797 * 16 15 14 23 23 H 1.08999 * 109.47153 * 274.31897 * 1 2 3 24 24 H 1.09005 * 109.46872 * 34.31502 * 1 2 3 25 25 H 1.08999 * 109.47181 * 154.31449 * 1 2 3 26 26 H 0.97003 * 119.99592 * 179.97438 * 6 5 3 27 27 H 1.09001 * 109.52314 * 57.01483 * 13 11 2 28 28 H 1.09001 * 109.52113 * 296.82072 * 13 11 2 29 29 H 1.08995 * 109.47910 * 182.33739 * 14 13 11 30 30 H 1.08999 * 109.48405 * 62.29709 * 14 13 11 31 31 H 1.08997 * 109.51048 * 177.04743 * 17 16 15 32 32 H 1.08997 * 109.54216 * 56.85002 * 17 16 15 33 33 H 1.08997 * 109.48293 * 182.48998 * 18 17 16 34 34 H 1.09004 * 109.48096 * 62.45466 * 18 17 16 35 35 H 1.09002 * 109.48085 * 58.81365 * 20 19 18 36 36 H 1.08996 * 109.48516 * 178.83891 * 20 19 18 37 37 H 1.08999 * 109.52243 * 303.14057 * 21 16 15 38 38 H 1.09001 * 109.57568 * 182.98155 * 21 16 15 39 39 H 1.09007 * 109.51346 * 177.28997 * 22 16 15 40 40 H 1.08994 * 109.51517 * 297.45276 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1706 1.2200 -0.3509 5 6 1.5317 2.3442 0.4509 6 7 0.3911 2.2701 1.1034 7 14 2.3191 4.0078 0.1319 8 1 1.8295 4.5472 -1.1622 9 1 1.9585 4.9442 1.2266 10 1 3.7951 3.8546 0.0776 11 6 2.1974 -1.2688 -0.0006 12 1 3.2693 -1.0709 -0.0037 13 6 1.8286 -2.0740 1.2493 14 6 2.5389 -3.4293 1.2013 15 8 2.1681 -4.1176 0.0050 16 6 2.5261 -3.4343 -1.1970 17 6 2.1046 -4.2730 -2.4067 18 6 2.8758 -5.5957 -2.3943 19 8 4.2794 -5.3270 -2.4014 20 6 4.7382 -4.5870 -1.2684 21 6 4.0421 -3.2237 -1.2349 22 6 1.8201 -2.0778 -1.2454 23 1 -0.3633 0.0774 1.0247 24 1 -0.3633 0.8489 -0.5794 25 1 -0.3633 -0.9261 -0.4454 26 1 -0.0406 3.0795 1.4189 27 1 0.7500 -2.2288 1.2777 28 1 2.1430 -1.5293 2.1395 29 1 2.2476 -4.0232 2.0675 30 1 3.6179 -3.2749 1.2123 31 1 2.3302 -3.7285 -3.3236 32 1 1.0347 -4.4748 -2.3556 33 1 2.6127 -6.1783 -3.2771 34 1 2.6180 -6.1585 -1.4971 35 1 4.5049 -5.1367 -0.3564 36 1 5.8163 -4.4432 -1.3403 37 1 4.3561 -2.6762 -0.3462 38 1 4.3097 -2.6560 -2.1260 39 1 2.1313 -1.5371 -2.1393 40 1 0.7410 -2.2295 -1.2678 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094375425.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:35 Heat of formation + Delta-G solvation = -92.861223 kcal Electronic energy + Delta-G solvation = -20683.548921 eV Core-core repulsion = 17691.044617 eV Total energy + Delta-G solvation = -2992.504304 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 4.04 seconds Orbital eigenvalues (eV) -41.63630 -38.95495 -37.34519 -34.36715 -34.03837 -32.18278 -31.56300 -29.52156 -28.08800 -26.01721 -24.79046 -24.09084 -23.63157 -21.16038 -20.00238 -18.84388 -17.65110 -17.17898 -16.85748 -16.65486 -16.42590 -15.79091 -15.66929 -15.50833 -14.87878 -14.76095 -14.35383 -14.02647 -13.55118 -13.44453 -13.23490 -12.97119 -12.86685 -12.76270 -12.42545 -12.31836 -12.25993 -12.10330 -12.00550 -11.80230 -11.60884 -11.31631 -10.95798 -10.66580 -10.56349 -10.17374 -8.80812 -7.84389 -5.32302 1.44445 1.45827 1.54412 2.48092 2.78848 3.01063 3.28393 3.52914 3.69309 3.82269 3.92568 4.00430 4.06906 4.26358 4.35234 4.40612 4.45696 4.46875 4.52125 4.69297 4.74336 4.80506 4.81616 4.85781 4.90542 5.00695 5.03747 5.08968 5.13707 5.22179 5.32527 5.41252 5.47008 5.60764 5.67665 6.28951 6.30452 6.33098 7.12884 7.85521 8.30348 9.18964 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.034700 B = 0.005743 C = 0.005500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.723111 B = 4874.561078 C = 5089.859478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.183 3.817 2 N -0.611 5.611 3 C -0.263 4.263 4 H 0.071 0.929 5 C -0.054 4.054 6 N -0.940 5.940 7 Si 0.969 3.031 8 H -0.287 1.287 9 H -0.295 1.295 10 H -0.267 1.267 11 C 0.174 3.826 12 H 0.059 0.941 13 C -0.159 4.159 14 C 0.069 3.931 15 O -0.379 6.379 16 C 0.123 3.877 17 C -0.138 4.138 18 C 0.066 3.934 19 O -0.399 6.399 20 C 0.069 3.931 21 C -0.180 4.180 22 C -0.141 4.141 23 H 0.000 1.000 24 H 0.014 0.986 25 H 0.024 0.976 26 H 0.247 0.753 27 H 0.049 0.951 28 H 0.053 0.947 29 H 0.108 0.892 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.112 0.888 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.107 0.893 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.061 0.939 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.082 -15.163 -4.548 16.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.334 5.334 3 C -0.393 4.393 4 H 0.088 0.912 5 C -0.249 4.249 6 N -0.587 5.587 7 Si 0.797 3.203 8 H -0.214 1.214 9 H -0.222 1.222 10 H -0.192 1.192 11 C 0.067 3.933 12 H 0.077 0.923 13 C -0.199 4.199 14 C -0.008 4.008 15 O -0.298 6.298 16 C 0.083 3.917 17 C -0.175 4.175 18 C -0.011 4.011 19 O -0.318 6.318 20 C -0.008 4.008 21 C -0.217 4.217 22 C -0.180 4.180 23 H 0.019 0.981 24 H 0.033 0.967 25 H 0.043 0.957 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.126 0.874 30 H 0.080 0.920 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.130 0.870 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.125 0.875 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.079 0.921 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.018 -15.259 -4.635 17.045 hybrid contribution -0.267 1.928 0.451 1.998 sum 5.750 -13.331 -4.184 15.110 Atomic orbital electron populations 1.20414 0.83204 0.95408 0.97183 1.44184 1.01865 1.01341 1.85965 1.19584 0.97963 0.86616 1.35187 0.91150 1.25776 0.98552 1.01813 0.98738 1.70249 1.19924 1.27366 1.41157 0.85237 0.78458 0.79789 0.76804 1.21403 1.22155 1.19188 1.20549 0.95164 0.84867 0.92714 0.92253 1.22626 1.00675 0.97032 0.99551 1.22612 0.98609 0.92036 0.87548 1.87850 1.81930 1.46496 1.13519 1.21401 0.93302 0.91077 0.85882 1.22194 1.01829 0.97408 0.96096 1.22616 0.80058 0.95328 1.03081 1.87862 1.24139 1.74623 1.45185 1.22554 0.99190 0.90115 0.88938 1.22772 0.95648 0.99515 1.03807 1.22539 1.00516 0.95695 0.99272 0.98128 0.96734 0.95732 0.94338 0.93229 0.92823 0.87374 0.91962 0.89568 0.89791 0.87040 0.92558 0.92551 0.87505 0.90310 0.90389 0.92072 0.92546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.36 7.96 127.77 1.02 10.38 16 2 N -0.61 -30.96 2.82 -702.08 -1.98 -32.94 16 3 C -0.26 -14.58 9.60 84.03 0.81 -13.77 16 4 H 0.07 3.77 7.81 -2.91 -0.02 3.74 16 5 C -0.05 -3.05 5.11 84.86 0.43 -2.62 16 6 N -0.94 -56.44 10.63 21.65 0.23 -56.21 16 7 Si 0.97 45.39 29.57 68.60 2.03 47.42 16 8 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 9 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 10 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 11 C 0.17 6.98 2.37 45.11 0.11 7.09 16 12 H 0.06 2.40 6.45 -2.39 -0.02 2.38 16 13 C -0.16 -5.77 5.47 30.69 0.17 -5.61 16 14 C 0.07 1.90 6.52 72.01 0.47 2.37 16 15 O -0.38 -10.78 9.20 -148.98 -1.37 -12.15 16 16 C 0.12 3.40 0.68 -10.72 -0.01 3.40 16 17 C -0.14 -3.21 5.15 30.67 0.16 -3.05 16 18 C 0.07 1.37 6.70 72.02 0.48 1.85 16 19 O -0.40 -9.58 10.76 -148.98 -1.60 -11.18 16 20 C 0.07 1.50 6.70 72.02 0.48 1.98 16 21 C -0.18 -4.51 4.26 30.67 0.13 -4.38 16 22 C -0.14 -4.84 4.24 30.66 0.13 -4.71 16 23 H 0.00 0.02 7.41 -2.39 -0.02 0.01 16 24 H 0.01 0.78 7.21 -2.38 -0.02 0.77 16 25 H 0.02 1.10 6.36 -2.39 -0.02 1.08 16 26 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 27 H 0.05 1.93 7.59 -2.39 -0.02 1.91 16 28 H 0.05 2.10 8.14 -2.39 -0.02 2.09 16 29 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 30 H 0.06 1.55 6.30 -2.39 -0.02 1.54 16 31 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.06 1.20 7.82 -2.38 -0.02 1.18 16 35 H 0.06 1.20 7.82 -2.39 -0.02 1.19 16 36 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.08 2.03 5.03 -2.39 -0.01 2.02 16 38 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 40 H 0.06 2.05 6.54 -2.39 -0.02 2.04 16 Total: -1.00 -63.99 298.84 2.69 -61.30 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: 1.01 Total: 10.83 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: 4.38 Total: -7.08 kcal Atomic # 7 Polarization: -87.39 SS G_CDS: -1.75 Total: -89.14 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: -2.97 Total: -23.32 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -63.99 2.69 -61.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094375425.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.559 kcal (2) G-P(sol) polarization free energy of solvation -63.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.04 seconds