Wall clock time and date at job start Mon Mar 30 2020 04:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45200 * 109.47184 * 2 1 4 4 C 1.34232 * 117.00132 * 180.02562 * 3 2 1 5 5 O 1.20829 * 119.99404 * 359.97438 * 4 3 2 6 6 C 1.50695 * 120.00034 * 180.02562 * 4 3 2 7 7 H 1.09002 * 109.46382 * 329.19132 * 6 4 3 8 8 C 1.53039 * 109.46338 * 89.16521 * 6 4 3 9 9 C 1.53114 * 109.27757 * 179.19543 * 8 6 4 10 10 C 1.53125 * 109.16172 * 302.33976 * 9 8 6 11 11 C 1.53037 * 109.27584 * 57.65617 * 10 9 8 12 12 N 1.46849 * 109.45923 * 209.21477 * 6 4 3 13 13 C 1.46898 * 111.00428 * 54.14433 * 12 6 4 14 14 H 1.09002 * 109.46650 * 309.67787 * 13 12 6 15 15 C 1.53008 * 109.46863 * 69.66810 * 13 12 6 16 16 C 1.50694 * 109.47462 * 189.67230 * 13 12 6 17 17 H 1.07993 * 120.00240 * 359.97438 * 16 13 12 18 18 C 1.37877 * 119.99731 * 179.72545 * 16 13 12 19 19 N 1.31519 * 119.99870 * 180.27640 * 18 16 13 20 20 Si 1.86803 * 120.00184 * 0.27637 * 18 16 13 21 21 H 1.48501 * 109.47101 * 90.00136 * 20 18 16 22 22 H 1.48503 * 109.46890 * 209.99991 * 20 18 16 23 23 H 1.48498 * 109.46943 * 329.99667 * 20 18 16 24 24 H 1.08994 * 109.46948 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46763 * 300.00171 * 1 2 3 26 26 H 1.09001 * 109.46787 * 59.99739 * 1 2 3 27 27 H 1.09000 * 109.47131 * 240.00441 * 2 1 3 28 28 H 1.08992 * 109.46799 * 119.99951 * 2 1 3 29 29 H 1.09001 * 109.49998 * 299.13272 * 8 6 4 30 30 H 1.09000 * 109.50475 * 59.21003 * 8 6 4 31 31 H 1.09003 * 109.52758 * 62.24447 * 9 8 6 32 32 H 1.08997 * 109.52569 * 182.37512 * 9 8 6 33 33 H 1.08996 * 109.50368 * 177.59780 * 10 9 8 34 34 H 1.09004 * 109.50048 * 297.67766 * 10 9 8 35 35 H 1.08994 * 109.46476 * 180.80745 * 11 10 9 36 36 H 1.09004 * 109.46037 * 60.83694 * 11 10 9 37 37 H 1.09000 * 109.46714 * 60.00454 * 15 13 12 38 38 H 1.08997 * 109.47057 * 179.97438 * 15 13 12 39 39 H 1.08996 * 109.47387 * 300.00438 * 15 13 12 40 40 H 0.96999 * 120.00083 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9208 2.9374 0.0000 7 1 3.2437 3.6107 -0.5256 8 6 4.0969 3.4158 1.4430 9 6 4.7009 4.8228 1.4389 10 6 6.0344 4.7951 0.6867 11 6 5.8021 4.2767 -0.7344 12 7 5.2242 2.9280 -0.6764 13 6 5.1160 2.3434 -2.0198 14 1 4.5972 1.3867 -1.9589 15 6 4.3306 3.2926 -2.9272 16 6 6.4955 2.1316 -2.5881 17 1 7.3656 2.4044 -2.0095 18 6 6.6469 1.5849 -3.8447 19 7 7.8510 1.3950 -4.3385 20 14 5.1418 1.1138 -4.8459 21 1 4.7150 2.2713 -5.6725 22 1 5.4748 -0.0309 -5.7314 23 1 4.0393 0.7264 -3.9296 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.1271 3.4375 1.9401 30 1 4.7626 2.7349 1.9735 31 1 4.0170 5.5114 0.9427 32 1 4.8673 5.1508 2.4650 33 1 6.4487 5.8023 0.6434 34 1 6.7313 4.1368 1.2055 35 1 6.7518 4.2422 -1.2681 36 1 5.1161 4.9436 -1.2566 37 1 4.8494 4.2493 -2.9880 38 1 4.2508 2.8591 -3.9241 39 1 3.3329 3.4458 -2.5161 40 1 7.9575 1.0107 -5.2228 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112463454.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:52 Heat of formation + Delta-G solvation = -79.891028 kcal Electronic energy + Delta-G solvation = -20594.629011 eV Core-core repulsion = 17602.687137 eV Total energy + Delta-G solvation = -2991.941874 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.44917 -38.44087 -36.08918 -34.54180 -32.04496 -31.82435 -30.70420 -29.10901 -25.39696 -24.73991 -23.57076 -22.73862 -20.83461 -20.33313 -18.81516 -17.34555 -16.69221 -16.15507 -16.05332 -15.35265 -14.59685 -14.17759 -14.00779 -13.74616 -13.46652 -13.05883 -12.97403 -12.83221 -12.43357 -12.36059 -12.06837 -11.79481 -11.63606 -11.49719 -11.28563 -10.98120 -10.70186 -10.62436 -10.41028 -10.33238 -10.10144 -9.86963 -9.61881 -9.45285 -8.99742 -8.54331 -7.42394 -6.03241 -3.99957 2.64296 2.88067 3.25861 3.37878 3.39233 4.42365 4.56864 4.86916 4.94641 5.02540 5.05169 5.19672 5.28304 5.29979 5.34925 5.49385 5.56581 5.73195 5.77203 5.88152 5.92851 5.93707 6.05960 6.11281 6.15896 6.20200 6.27453 6.34681 6.48048 6.62761 6.70419 6.72418 6.85608 7.14847 7.65033 7.82459 7.99889 8.24879 8.67123 9.04297 9.58957 11.09956 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.015357 B = 0.010031 C = 0.006746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.874771 B = 2790.795322 C = 4149.533208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.367 6.367 4 C 0.462 3.538 5 O -0.474 6.474 6 C 0.094 3.906 7 H 0.063 0.937 8 C -0.105 4.105 9 C -0.115 4.115 10 C -0.121 4.121 11 C 0.063 3.937 12 N -0.500 5.500 13 C 0.173 3.827 14 H 0.046 0.954 15 C -0.190 4.190 16 C -0.493 4.493 17 H 0.084 0.916 18 C 0.071 3.929 19 N -0.899 5.899 20 Si 0.883 3.117 21 H -0.280 1.280 22 H -0.295 1.295 23 H -0.271 1.271 24 H 0.076 0.924 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.097 0.903 36 H 0.029 0.971 37 H 0.059 0.941 38 H 0.046 0.954 39 H 0.026 0.974 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.822 4.301 10.208 16.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.285 6.285 4 C 0.302 3.698 5 O -0.357 6.357 6 C -0.016 4.016 7 H 0.081 0.919 8 C -0.143 4.143 9 C -0.152 4.152 10 C -0.159 4.159 11 C -0.064 4.064 12 N -0.226 5.226 13 C 0.066 3.934 14 H 0.064 0.936 15 C -0.249 4.249 16 C -0.532 4.532 17 H 0.102 0.898 18 C -0.131 4.131 19 N -0.538 5.538 20 Si 0.714 3.286 21 H -0.207 1.207 22 H -0.223 1.223 23 H -0.197 1.197 24 H 0.095 0.905 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.115 0.885 36 H 0.047 0.953 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.045 0.955 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.186 3.590 10.332 16.375 hybrid contribution -1.367 -0.051 -1.320 1.901 sum -13.553 3.539 9.012 16.656 Atomic orbital electron populations 1.21785 0.92956 1.02667 1.03283 1.22952 0.95015 0.80897 1.02599 1.86489 1.25357 1.31895 1.84768 1.23681 0.80061 0.93045 0.72991 1.90700 1.59926 1.42553 1.42532 1.21216 0.93196 0.89178 0.98009 0.91909 1.21539 1.01311 0.97832 0.93603 1.21543 0.97557 0.95718 1.00421 1.21686 0.96977 1.00621 0.96636 1.22074 1.00997 0.87832 0.95540 1.62014 1.18110 1.21099 1.21334 1.19954 0.97835 0.92946 0.82662 0.93621 1.22884 0.98435 1.02408 1.01149 1.20833 0.90841 1.40938 1.00557 0.89820 1.24871 0.95443 0.95277 0.97491 1.69871 1.21148 1.45100 1.17676 0.86935 0.83937 0.77479 0.80276 1.20717 1.22281 1.19684 0.90482 0.91655 0.91598 0.91321 0.91400 0.91440 0.90416 0.92230 0.91746 0.91866 0.91021 0.88517 0.95325 0.92155 0.93513 0.95462 0.92682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 10.29 37.16 0.38 -1.10 16 2 C 0.06 0.83 6.19 37.16 0.23 1.06 16 3 O -0.37 -6.13 10.22 -39.26 -0.40 -6.54 16 4 C 0.46 8.98 5.91 36.00 0.21 9.19 16 5 O -0.47 -10.86 15.05 -18.75 -0.28 -11.14 16 6 C 0.09 1.69 2.01 -68.87 -0.14 1.55 16 7 H 0.06 1.07 6.86 -51.93 -0.36 0.72 16 8 C -0.10 -1.50 5.36 -26.65 -0.14 -1.64 16 9 C -0.11 -1.44 6.00 -26.61 -0.16 -1.59 16 10 C -0.12 -1.76 6.09 -26.65 -0.16 -1.92 16 11 C 0.06 1.16 4.55 -3.83 -0.02 1.14 16 12 N -0.50 -10.59 4.20 -221.52 -0.93 -11.52 16 13 C 0.17 4.27 1.53 -68.86 -0.11 4.17 16 14 H 0.05 1.24 4.81 -51.93 -0.25 0.99 16 15 C -0.19 -4.24 7.94 37.16 0.29 -3.94 16 16 C -0.49 -14.15 8.46 -34.44 -0.29 -14.44 16 17 H 0.08 2.59 7.34 -52.49 -0.39 2.20 16 18 C 0.07 2.08 5.45 -17.82 -0.10 1.98 16 19 N -0.90 -27.90 13.96 55.43 0.77 -27.12 16 20 Si 0.88 22.73 24.37 -169.99 -4.14 18.59 16 21 H -0.28 -6.93 6.88 56.52 0.39 -6.54 16 22 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 23 H -0.27 -6.90 6.52 56.52 0.37 -6.53 16 24 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 1.03 8.13 -51.93 -0.42 0.61 16 28 H 0.07 0.89 8.13 -51.93 -0.42 0.47 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.10 2.01 6.67 -51.93 -0.35 1.66 16 36 H 0.03 0.50 6.58 -51.93 -0.34 0.16 16 37 H 0.06 1.28 6.46 -51.93 -0.34 0.94 16 38 H 0.05 1.10 3.29 -51.93 -0.17 0.93 16 39 H 0.03 0.53 6.80 -51.93 -0.35 0.18 16 40 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 304.76 15.07 4.59 4.59 Total: -1.00 -32.69 304.76 -6.75 -39.44 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -6.37 Total: -0.75 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: 0.01 Total: -5.56 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: -0.16 Total: -38.64 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -0.68 Total: -17.67 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -4.14 Total: 18.59 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -32.69 -6.75 -39.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112463454.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.450 kcal (2) G-P(sol) polarization free energy of solvation -32.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds