Wall clock time and date at job start Mon Mar 30 2020 04:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45200 * 109.47184 * 2 1 4 4 C 1.34232 * 117.00132 * 180.02562 * 3 2 1 5 5 O 1.20829 * 119.99404 * 359.97438 * 4 3 2 6 6 C 1.50695 * 120.00034 * 180.02562 * 4 3 2 7 7 H 1.09002 * 109.46382 * 329.19132 * 6 4 3 8 8 C 1.53039 * 109.46338 * 89.16521 * 6 4 3 9 9 C 1.53114 * 109.27757 * 179.19543 * 8 6 4 10 10 C 1.53125 * 109.16172 * 302.33976 * 9 8 6 11 11 C 1.53037 * 109.27584 * 57.65617 * 10 9 8 12 12 N 1.46849 * 109.45923 * 209.21477 * 6 4 3 13 13 C 1.46898 * 111.00428 * 54.14433 * 12 6 4 14 14 H 1.09002 * 109.46650 * 309.67787 * 13 12 6 15 15 C 1.53008 * 109.46863 * 69.66810 * 13 12 6 16 16 C 1.50694 * 109.47462 * 189.67230 * 13 12 6 17 17 H 1.07993 * 120.00240 * 359.97438 * 16 13 12 18 18 C 1.37877 * 119.99731 * 179.72545 * 16 13 12 19 19 N 1.31519 * 119.99870 * 180.27640 * 18 16 13 20 20 Si 1.86803 * 120.00184 * 0.27637 * 18 16 13 21 21 H 1.48501 * 109.47101 * 90.00136 * 20 18 16 22 22 H 1.48503 * 109.46890 * 209.99991 * 20 18 16 23 23 H 1.48498 * 109.46943 * 329.99667 * 20 18 16 24 24 H 1.08994 * 109.46948 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46763 * 300.00171 * 1 2 3 26 26 H 1.09001 * 109.46787 * 59.99739 * 1 2 3 27 27 H 1.09000 * 109.47131 * 240.00441 * 2 1 3 28 28 H 1.08992 * 109.46799 * 119.99951 * 2 1 3 29 29 H 1.09001 * 109.49998 * 299.13272 * 8 6 4 30 30 H 1.09000 * 109.50475 * 59.21003 * 8 6 4 31 31 H 1.09003 * 109.52758 * 62.24447 * 9 8 6 32 32 H 1.08997 * 109.52569 * 182.37512 * 9 8 6 33 33 H 1.08996 * 109.50368 * 177.59780 * 10 9 8 34 34 H 1.09004 * 109.50048 * 297.67766 * 10 9 8 35 35 H 1.08994 * 109.46476 * 180.80745 * 11 10 9 36 36 H 1.09004 * 109.46037 * 60.83694 * 11 10 9 37 37 H 1.09000 * 109.46714 * 60.00454 * 15 13 12 38 38 H 1.08997 * 109.47057 * 179.97438 * 15 13 12 39 39 H 1.08996 * 109.47387 * 300.00438 * 15 13 12 40 40 H 0.96999 * 120.00083 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9208 2.9374 0.0000 7 1 3.2437 3.6107 -0.5256 8 6 4.0969 3.4158 1.4430 9 6 4.7009 4.8228 1.4389 10 6 6.0344 4.7951 0.6867 11 6 5.8021 4.2767 -0.7344 12 7 5.2242 2.9280 -0.6764 13 6 5.1160 2.3434 -2.0198 14 1 4.5972 1.3867 -1.9589 15 6 4.3306 3.2926 -2.9272 16 6 6.4955 2.1316 -2.5881 17 1 7.3656 2.4044 -2.0095 18 6 6.6469 1.5849 -3.8447 19 7 7.8510 1.3950 -4.3385 20 14 5.1418 1.1138 -4.8459 21 1 4.7150 2.2713 -5.6725 22 1 5.4748 -0.0309 -5.7314 23 1 4.0393 0.7264 -3.9296 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.1271 3.4375 1.9401 30 1 4.7626 2.7349 1.9735 31 1 4.0170 5.5114 0.9427 32 1 4.8673 5.1508 2.4650 33 1 6.4487 5.8023 0.6434 34 1 6.7313 4.1368 1.2055 35 1 6.7518 4.2422 -1.2681 36 1 5.1161 4.9436 -1.2566 37 1 4.8494 4.2493 -2.9880 38 1 4.2508 2.8591 -3.9241 39 1 3.3329 3.4458 -2.5161 40 1 7.9575 1.0107 -5.2228 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112463454.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:52 Heat of formation + Delta-G solvation = -102.616017 kcal Electronic energy + Delta-G solvation = -20595.614440 eV Core-core repulsion = 17602.687137 eV Total energy + Delta-G solvation = -2992.927304 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.91720 -39.88140 -37.54306 -36.19833 -34.04988 -32.98067 -31.92052 -30.79330 -27.32698 -26.24255 -24.95346 -23.84088 -22.40181 -21.78145 -20.26356 -18.77897 -18.72299 -17.62503 -17.53712 -17.05797 -16.19664 -15.58572 -15.42404 -15.18773 -14.80225 -14.71137 -14.40213 -14.15199 -14.03563 -13.63403 -13.47702 -13.36528 -13.10221 -12.85061 -12.63387 -12.54244 -12.29294 -12.13255 -11.85661 -11.64532 -11.57282 -11.51751 -11.33920 -11.01569 -10.95616 -10.77050 -9.02419 -8.31838 -6.32463 1.15437 1.19439 1.27407 1.35706 1.58349 2.25816 3.00345 3.07438 3.66625 3.82900 3.95185 4.02594 4.07059 4.12291 4.23954 4.29198 4.33438 4.39523 4.43846 4.56674 4.59865 4.80606 4.82831 4.89606 4.90929 4.97900 5.02104 5.10699 5.13820 5.21289 5.32075 5.36667 5.41266 5.53498 5.61731 5.94873 6.35146 6.54350 6.71395 6.82982 7.30317 8.85204 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.015357 B = 0.010031 C = 0.006746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.874771 B = 2790.795322 C = 4149.533208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.048 3.952 3 O -0.361 6.361 4 C 0.461 3.539 5 O -0.521 6.521 6 C 0.091 3.909 7 H 0.082 0.918 8 C -0.101 4.101 9 C -0.106 4.106 10 C -0.116 4.116 11 C 0.063 3.937 12 N -0.524 5.524 13 C 0.180 3.820 14 H 0.021 0.979 15 C -0.183 4.183 16 C -0.495 4.495 17 H 0.042 0.958 18 C 0.014 3.986 19 N -0.945 5.945 20 Si 0.944 3.056 21 H -0.258 1.258 22 H -0.295 1.295 23 H -0.268 1.268 24 H 0.101 0.899 25 H 0.078 0.922 26 H 0.066 0.934 27 H 0.050 0.950 28 H 0.071 0.929 29 H 0.098 0.902 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.043 0.957 37 H 0.067 0.933 38 H 0.035 0.965 39 H 0.057 0.943 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.073 5.885 11.261 20.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.025 4.025 3 O -0.278 6.278 4 C 0.304 3.696 5 O -0.408 6.408 6 C -0.019 4.019 7 H 0.099 0.901 8 C -0.139 4.139 9 C -0.144 4.144 10 C -0.154 4.154 11 C -0.064 4.064 12 N -0.250 5.250 13 C 0.072 3.928 14 H 0.039 0.961 15 C -0.242 4.242 16 C -0.533 4.533 17 H 0.060 0.940 18 C -0.183 4.183 19 N -0.586 5.586 20 Si 0.772 3.228 21 H -0.183 1.183 22 H -0.223 1.223 23 H -0.193 1.193 24 H 0.119 0.881 25 H 0.097 0.903 26 H 0.085 0.915 27 H 0.069 0.931 28 H 0.090 0.910 29 H 0.116 0.884 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.113 0.887 33 H 0.107 0.893 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.061 0.939 37 H 0.086 0.914 38 H 0.054 0.946 39 H 0.076 0.924 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.470 5.207 11.405 19.912 hybrid contribution -0.313 -0.578 -1.552 1.686 sum -15.783 4.629 9.853 19.173 Atomic orbital electron populations 1.21806 0.89415 1.04513 1.03976 1.23305 0.97719 0.79500 1.01992 1.86487 1.23711 1.33557 1.83999 1.24103 0.80640 0.93221 0.71664 1.90681 1.61154 1.44072 1.44909 1.21452 0.91615 0.88714 1.00100 0.90076 1.21608 1.02842 0.98518 0.90884 1.21545 0.96049 0.94738 1.02026 1.21663 0.98475 1.01303 0.93947 1.22076 0.99217 0.86908 0.98184 1.61827 1.20828 1.22804 1.19508 1.19624 0.95038 0.93031 0.85137 0.96129 1.22728 0.99748 1.01828 0.99869 1.21079 0.91998 1.40029 1.00223 0.93990 1.25678 0.98343 0.95451 0.98843 1.70017 1.23485 1.46754 1.18384 0.85931 0.80248 0.77789 0.78811 1.18330 1.22276 1.19289 0.88077 0.90277 0.91515 0.93113 0.91042 0.88352 0.92093 0.90302 0.88716 0.89288 0.92656 0.92385 0.93864 0.91376 0.94622 0.92388 0.92529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 10.29 71.98 0.74 -1.63 16 2 C 0.05 1.28 6.19 71.98 0.45 1.73 16 3 O -0.36 -11.39 10.22 -51.43 -0.53 -11.92 16 4 C 0.46 17.56 5.91 71.23 0.42 17.98 16 5 O -0.52 -24.38 15.05 21.96 0.33 -24.05 16 6 C 0.09 3.09 2.01 44.19 0.09 3.17 16 7 H 0.08 2.47 6.86 -2.39 -0.02 2.46 16 8 C -0.10 -2.58 5.36 30.65 0.16 -2.42 16 9 C -0.11 -2.21 6.00 30.67 0.18 -2.03 16 10 C -0.12 -3.13 6.09 30.65 0.19 -2.95 16 11 C 0.06 2.29 4.55 86.32 0.39 2.69 16 12 N -0.52 -22.20 4.20 -854.75 -3.59 -25.79 16 13 C 0.18 8.95 1.53 44.17 0.07 9.02 16 14 H 0.02 1.14 4.81 -2.39 -0.01 1.13 16 15 C -0.18 -7.86 7.94 71.98 0.57 -7.28 16 16 C -0.49 -29.60 8.46 25.60 0.22 -29.38 16 17 H 0.04 2.78 7.34 -2.91 -0.02 2.76 16 18 C 0.01 0.84 5.45 84.65 0.46 1.31 16 19 N -0.95 -60.92 13.96 21.45 0.30 -60.62 16 20 Si 0.94 47.50 24.37 68.60 1.67 49.17 16 21 H -0.26 -11.95 6.88 99.48 0.68 -11.27 16 22 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 23 H -0.27 -13.19 6.52 99.48 0.65 -12.54 16 24 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 26 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.05 1.52 8.13 -2.39 -0.02 1.50 16 28 H 0.07 1.82 8.13 -2.39 -0.02 1.80 16 29 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 35 H 0.06 2.52 6.67 -2.39 -0.02 2.51 16 36 H 0.04 1.43 6.58 -2.38 -0.02 1.41 16 37 H 0.07 2.78 6.46 -2.39 -0.02 2.76 16 38 H 0.04 1.60 3.29 -2.39 -0.01 1.59 16 39 H 0.06 2.10 6.80 -2.39 -0.02 2.09 16 40 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 Total: -1.00 -75.02 304.76 3.07 -71.96 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: 0.93 Total: 11.05 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: 3.94 Total: -9.80 kcal Atomic # 7 Polarization: -83.12 SS G_CDS: -3.29 Total: -86.41 kcal Atomic # 8 Polarization: -35.78 SS G_CDS: -0.20 Total: -35.97 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 1.67 Total: 49.17 kcal Total: -75.02 3.07 -71.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112463454.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.660 kcal (2) G-P(sol) polarization free energy of solvation -75.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds