Wall clock time and date at job start Mon Mar 30 2020 05:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42905 * 114.00048 * 2 1 4 4 H 1.08996 * 109.40067 * 29.89932 * 3 2 1 5 5 C 1.52949 * 109.43676 * 270.00394 * 3 2 1 6 6 C 1.53086 * 109.68534 * 180.45073 * 5 3 2 7 7 C 1.52888 * 109.23528 * 59.76144 * 6 5 3 8 8 H 1.09003 * 109.45341 * 59.24311 * 7 6 5 9 9 O 1.42869 * 110.16017 * 179.63119 * 7 6 5 10 10 C 1.43112 * 113.44329 * 179.06760 * 9 7 6 11 11 C 1.53047 * 109.49630 * 301.60179 * 10 9 7 12 12 N 1.47101 * 109.47625 * 56.33437 * 11 10 9 13 13 C 1.46899 * 111.00428 * 178.09252 * 12 11 10 14 14 C 1.50697 * 109.46977 * 293.95524 * 13 12 11 15 15 H 1.08001 * 120.00266 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99793 * 179.97438 * 14 13 12 17 17 N 1.31509 * 119.99818 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 120.00018 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.47273 * 90.00124 * 18 16 14 20 20 H 1.48504 * 109.47046 * 210.00062 * 18 16 14 21 21 H 1.48495 * 109.47158 * 329.99976 * 18 16 14 22 22 C 1.46880 * 110.48500 * 301.68083 * 12 11 10 23 23 H 1.08995 * 109.44864 * 299.30756 * 22 12 11 24 24 C 1.52881 * 110.13300 * 179.00390 * 22 12 11 25 25 H 1.08996 * 109.47252 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46757 * 299.99453 * 1 2 3 27 27 H 1.08996 * 109.47622 * 59.99396 * 1 2 3 28 28 H 1.08994 * 109.43635 * 60.38297 * 5 3 2 29 29 H 1.08996 * 109.43550 * 300.51275 * 5 3 2 30 30 H 1.09003 * 109.50769 * 179.68909 * 6 5 3 31 31 H 1.09000 * 109.50718 * 299.78218 * 6 5 3 32 32 H 1.09003 * 109.46950 * 61.61434 * 10 9 7 33 33 H 1.09005 * 109.46812 * 181.59832 * 10 9 7 34 34 H 1.09005 * 109.47161 * 176.33401 * 11 10 9 35 35 H 1.09001 * 109.47186 * 296.33275 * 11 10 9 36 36 H 1.09000 * 109.46776 * 53.95398 * 13 12 11 37 37 H 1.08999 * 109.47207 * 173.95196 * 13 12 11 38 38 H 0.97001 * 119.99855 * 179.97438 * 17 16 14 39 39 H 1.09000 * 109.51632 * 299.52058 * 24 22 12 40 40 H 1.08993 * 109.51724 * 59.62753 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3433 1.9988 0.5125 5 6 2.2172 1.7705 -1.4423 6 6 2.8502 3.1643 -1.4490 7 6 4.1970 3.1093 -0.7276 8 1 4.8499 2.3967 -1.2316 9 8 4.8098 4.3999 -0.7297 10 6 6.0696 4.4332 -0.0515 11 6 5.8809 3.9823 1.3989 12 7 5.2669 2.6457 1.4210 13 6 5.1117 2.1603 2.7988 14 6 6.4715 1.9404 3.4100 15 1 7.3620 2.1407 2.8326 16 6 6.5788 1.4834 4.7065 17 7 7.7655 1.2910 5.2397 18 14 5.0387 1.1376 5.7054 19 1 4.6254 -0.2745 5.5051 20 1 5.3194 1.3719 7.1448 21 1 3.9471 2.0407 5.2606 22 6 3.9764 2.6612 0.7199 23 1 3.3017 3.3583 1.2169 24 6 3.3572 1.2634 0.7264 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.2551 1.8066 -1.9533 29 1 2.8750 1.0710 -1.9581 30 1 3.0014 3.4905 -2.4780 31 1 2.1909 3.8659 -0.9378 32 1 6.7694 3.7639 -0.5519 33 1 6.4641 5.4492 -0.0675 34 1 6.8499 3.9452 1.8968 35 1 5.2326 4.6885 1.9175 36 1 4.5651 2.8992 3.3848 37 1 4.5596 1.2205 2.7929 38 1 7.8410 0.9698 6.1519 39 1 4.0238 0.5675 0.2170 40 1 3.2067 0.9365 1.7552 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158466587.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:12 Heat of formation + Delta-G solvation = -89.226561 kcal Electronic energy + Delta-G solvation = -20354.820862 eV Core-core repulsion = 17362.474169 eV Total energy + Delta-G solvation = -2992.346693 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.09294 -38.12445 -35.60447 -35.11674 -32.44376 -30.18036 -29.67365 -28.62111 -26.45467 -25.58101 -23.04202 -22.61138 -20.99736 -20.16809 -19.65986 -17.11549 -16.40710 -16.26446 -15.68254 -15.44065 -15.13650 -14.56962 -14.37272 -13.95995 -13.78774 -13.37859 -13.13369 -12.97677 -12.55701 -12.36179 -12.19402 -11.71828 -11.50511 -11.27784 -11.05891 -10.83698 -10.81253 -10.68339 -10.55607 -10.38145 -10.02934 -9.89622 -9.54145 -9.27737 -9.00630 -8.57981 -7.48901 -6.07996 -4.05372 3.26797 3.34077 3.35789 3.63478 3.99633 4.39502 4.48166 4.72410 4.94361 5.12806 5.14464 5.21621 5.26524 5.30164 5.32794 5.39474 5.46556 5.56231 5.57334 5.60938 5.68270 5.73340 5.82347 5.96158 6.02475 6.12118 6.22300 6.28821 6.39816 6.52098 6.57253 6.80969 6.90878 7.21149 7.44767 7.55669 7.80605 7.95141 8.61086 8.99420 9.53605 11.04987 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.017808 B = 0.007841 C = 0.005705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.921439 B = 3570.258826 C = 4907.207722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.090 3.910 4 H 0.059 0.941 5 C -0.135 4.135 6 C -0.106 4.106 7 C 0.098 3.902 8 H 0.066 0.934 9 O -0.389 6.389 10 C 0.064 3.936 11 C 0.028 3.972 12 N -0.518 5.518 13 C 0.158 3.842 14 C -0.510 4.510 15 H 0.081 0.919 16 C 0.070 3.930 17 N -0.899 5.899 18 Si 0.872 3.128 19 H -0.274 1.274 20 H -0.286 1.286 21 H -0.268 1.268 22 C 0.057 3.943 23 H 0.038 0.962 24 C -0.110 4.110 25 H 0.083 0.917 26 H 0.040 0.960 27 H 0.039 0.961 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.030 0.970 36 H -0.012 1.012 37 H 0.032 0.968 38 H 0.264 0.736 39 H 0.082 0.918 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.613 2.683 -12.301 17.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.301 6.301 3 C 0.032 3.968 4 H 0.077 0.923 5 C -0.173 4.173 6 C -0.144 4.144 7 C 0.039 3.961 8 H 0.084 0.916 9 O -0.308 6.308 10 C -0.013 4.013 11 C -0.100 4.100 12 N -0.243 5.243 13 C 0.032 3.968 14 C -0.548 4.548 15 H 0.099 0.901 16 C -0.132 4.132 17 N -0.538 5.538 18 Si 0.699 3.301 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.193 1.193 22 C -0.053 4.053 23 H 0.056 0.944 24 C -0.147 4.147 25 H 0.102 0.898 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.110 0.890 34 H 0.118 0.882 35 H 0.048 0.952 36 H 0.006 0.994 37 H 0.050 0.950 38 H 0.074 0.926 39 H 0.101 0.899 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.168 2.293 -12.452 17.560 hybrid contribution -1.358 0.315 1.356 1.944 sum -13.525 2.608 -11.096 17.688 Atomic orbital electron populations 1.22764 0.81596 1.02494 0.99729 1.87937 1.19187 1.27957 1.95026 1.22195 0.95290 0.84152 0.95208 0.92332 1.21970 1.01234 0.96644 0.97445 1.21401 0.95176 0.96808 1.01056 1.22107 0.94058 0.85254 0.94635 0.91557 1.87873 1.35618 1.30566 1.76750 1.22734 0.85118 1.01293 0.92169 1.22666 1.01895 0.89568 0.95881 1.62234 1.19787 1.23306 1.18997 1.20283 0.98419 0.94620 0.83490 1.20998 0.91827 1.44239 0.97756 0.90116 1.24877 0.95709 0.95112 0.97485 1.69885 1.22456 1.46424 1.15019 0.86904 0.84183 0.79267 0.79715 1.19985 1.21137 1.19336 1.22085 0.92175 0.95784 0.95210 0.94417 1.21622 0.94217 0.97164 1.01740 0.89818 0.94179 0.94282 0.91496 0.90623 0.90718 0.91348 0.92503 0.89021 0.88203 0.95199 0.99443 0.94974 0.92623 0.89927 0.90318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.82 101.05 1.09 1.41 16 2 O -0.38 -5.37 10.35 -35.23 -0.36 -5.74 16 3 C 0.09 1.22 2.61 -26.71 -0.07 1.15 16 4 H 0.06 0.76 7.78 -51.93 -0.40 0.35 16 5 C -0.14 -1.57 5.53 -26.71 -0.15 -1.72 16 6 C -0.11 -1.31 5.62 -26.74 -0.15 -1.46 16 7 C 0.10 1.51 2.63 -26.72 -0.07 1.44 16 8 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 9 O -0.39 -6.42 10.52 -35.23 -0.37 -6.79 16 10 C 0.06 1.02 7.00 37.18 0.26 1.28 16 11 C 0.03 0.54 5.44 -3.69 -0.02 0.52 16 12 N -0.52 -10.91 4.56 -227.90 -1.04 -11.95 16 13 C 0.16 3.83 3.56 -4.98 -0.02 3.81 16 14 C -0.51 -14.39 9.04 -34.44 -0.31 -14.70 16 15 H 0.08 2.46 7.36 -52.49 -0.39 2.07 16 16 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 17 N -0.90 -27.41 13.96 55.43 0.77 -26.64 16 18 Si 0.87 21.54 27.47 -169.99 -4.67 16.87 16 19 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 22 C 0.06 1.01 1.79 -67.72 -0.12 0.89 16 23 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 24 C -0.11 -1.83 4.62 -26.75 -0.12 -1.96 16 25 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.04 0.38 8.08 -51.93 -0.42 -0.04 16 27 H 0.04 0.33 7.87 -51.93 -0.41 -0.07 16 28 H 0.07 0.66 7.87 -51.93 -0.41 0.25 16 29 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 34 H 0.10 2.08 6.81 -51.93 -0.35 1.73 16 35 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 36 H -0.01 -0.30 7.18 -51.93 -0.37 -0.67 16 37 H 0.03 0.78 5.25 -51.93 -0.27 0.51 16 38 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 39 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 40 H 0.08 1.45 6.21 -51.93 -0.32 1.13 16 LS Contribution 305.87 15.07 4.61 4.61 Total: -1.00 -30.95 305.87 -7.58 -38.53 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -6.74 Total: -1.48 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: 0.22 Total: -7.41 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: -0.27 Total: -38.59 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: -0.73 Total: -12.53 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.95 -7.58 -38.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158466587.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.700 kcal (2) G-P(sol) polarization free energy of solvation -30.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds