Wall clock time and date at job start Mon Mar 30 2020 04:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46500 * 120.00020 * 2 1 4 4 C 1.50706 * 109.46949 * 89.99910 * 3 2 1 5 5 H 1.07995 * 120.00167 * 359.72205 * 4 3 2 6 6 C 1.37879 * 119.99394 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 3 9 9 H 1.48492 * 109.47487 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47233 * 120.00158 * 8 6 4 11 11 H 1.48508 * 109.46883 * 239.99963 * 8 6 4 12 12 C 1.34777 * 119.99857 * 179.97438 * 2 1 3 13 13 O 1.21284 * 120.00042 * 180.02562 * 12 2 1 14 14 C 1.50699 * 120.00130 * 0.02562 * 12 2 1 15 15 C 1.53007 * 109.47116 * 179.97438 * 14 12 2 16 16 C 1.52999 * 109.46877 * 179.97438 * 15 14 12 17 17 H 1.09003 * 109.52128 * 55.00810 * 16 15 14 18 18 C 1.53175 * 109.51886 * 175.12565 * 16 15 14 19 19 C 1.53185 * 109.03658 * 176.89048 * 18 16 15 20 20 C 1.53093 * 109.16006 * 303.02048 * 19 18 16 21 21 O 1.42904 * 109.41490 * 57.61103 * 20 19 18 22 22 C 1.42908 * 114.14959 * 298.87131 * 21 20 19 23 23 H 1.09001 * 109.47412 * 89.99916 * 1 2 3 24 24 H 1.09000 * 109.47567 * 210.00198 * 1 2 3 25 25 H 1.09002 * 109.47279 * 329.99646 * 1 2 3 26 26 H 1.09000 * 109.47175 * 329.99936 * 3 2 1 27 27 H 1.09001 * 109.47297 * 209.99443 * 3 2 1 28 28 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 29 29 H 1.09005 * 109.47151 * 299.99768 * 14 12 2 30 30 H 1.08993 * 109.47232 * 59.99939 * 14 12 2 31 31 H 1.08999 * 109.47153 * 300.00435 * 15 14 12 32 32 H 1.09002 * 109.46712 * 60.00084 * 15 14 12 33 33 H 1.09004 * 109.54791 * 296.75915 * 18 16 15 34 34 H 1.08996 * 109.54790 * 56.93425 * 18 16 15 35 35 H 1.08997 * 109.52283 * 62.92348 * 19 18 16 36 36 H 1.08995 * 109.52137 * 183.05049 * 19 18 16 37 37 H 1.08994 * 109.47931 * 177.59055 * 20 19 18 38 38 H 1.09002 * 109.48148 * 297.61366 * 20 19 18 39 39 H 1.09003 * 109.43184 * 301.10819 * 22 21 20 40 40 H 1.09000 * 109.53592 * 181.07929 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7038 1.4209 5 1 2.0938 1.0983 2.2417 6 6 3.1268 2.8775 1.6727 7 7 3.5542 3.6176 0.6731 8 14 3.4388 3.4163 3.4339 9 1 2.8607 2.4165 4.3673 10 1 4.9014 3.5241 3.6670 11 1 2.8017 4.7373 3.6676 12 6 2.1388 -1.1672 0.0005 13 8 3.3516 -1.1673 0.0010 14 6 1.3853 -2.4723 0.0005 15 6 2.3796 -3.6353 0.0005 16 6 1.6145 -4.9603 0.0012 17 1 0.9219 -4.9813 -0.8402 18 6 2.6043 -6.1228 -0.1215 19 6 1.8347 -7.4448 -0.0416 20 6 1.0464 -7.4888 1.2701 21 8 0.1676 -6.3638 1.3341 22 6 0.8335 -5.0996 1.3104 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3634 -0.8899 0.5138 25 1 -0.3634 0.8900 0.5139 26 1 1.6084 2.0284 -0.5138 27 1 3.1499 1.1384 -0.5137 28 1 4.0310 4.4434 0.8504 29 1 0.7583 -2.5299 0.8903 30 1 0.7590 -2.5303 -0.8896 31 1 3.0063 -3.5775 -0.8894 32 1 3.0062 -3.5775 0.8905 33 1 3.1235 -6.0604 -1.0779 34 1 3.3293 -6.0718 0.6908 35 1 1.1457 -7.5167 -0.8831 36 1 2.5370 -8.2777 -0.0736 37 1 0.4631 -8.4085 1.3129 38 1 1.7387 -7.4579 2.1115 39 1 1.5222 -5.0366 2.1530 40 1 0.0977 -4.2986 1.3817 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177763379.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:37:41 Heat of formation + Delta-G solvation = -128.350565 kcal Electronic energy + Delta-G solvation = -19218.700769 eV Core-core repulsion = 16224.657532 eV Total energy + Delta-G solvation = -2994.043237 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.85444 -40.12060 -36.68176 -35.97402 -34.73435 -33.60355 -31.04212 -29.47307 -27.32226 -26.20822 -25.92128 -24.41007 -22.31939 -20.98659 -19.86583 -18.71398 -17.87296 -17.30645 -17.11798 -16.82539 -16.44230 -16.11988 -15.70695 -15.25162 -14.74428 -14.64863 -14.22322 -14.05108 -13.60798 -13.52014 -13.45134 -13.28633 -13.05288 -12.83357 -12.69911 -12.46565 -12.24061 -12.18356 -12.04463 -11.71753 -11.67156 -11.41113 -11.12884 -10.66361 -10.55424 -10.34249 -9.40356 -8.23673 -6.38985 1.35471 1.37827 1.49865 1.87465 2.32772 2.48502 2.99036 3.05552 3.69221 3.74461 3.83198 3.98205 4.06134 4.26338 4.32179 4.35072 4.45325 4.56138 4.60655 4.69065 4.73589 4.78018 4.86317 4.92362 4.95606 4.99221 5.05387 5.10776 5.16897 5.22955 5.27855 5.30073 5.47703 5.56164 5.84785 6.05247 6.29574 6.69229 6.81780 7.27550 7.51435 8.83586 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.033239 B = 0.004014 C = 0.003933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.189407 B = 6973.607705 C = 7117.068425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.614 5.614 3 C 0.257 3.743 4 C -0.543 4.543 5 H 0.053 0.947 6 C 0.005 3.995 7 N -0.930 5.930 8 Si 0.970 3.030 9 H -0.266 1.266 10 H -0.281 1.281 11 H -0.268 1.268 12 C 0.489 3.511 13 O -0.602 6.602 14 C -0.125 4.125 15 C -0.090 4.090 16 C -0.111 4.111 17 H 0.088 0.912 18 C -0.122 4.122 19 C -0.150 4.150 20 C 0.052 3.948 21 O -0.400 6.400 22 C 0.060 3.940 23 H 0.070 0.930 24 H 0.096 0.904 25 H 0.063 0.937 26 H 0.022 0.978 27 H -0.005 1.005 28 H 0.267 0.733 29 H 0.112 0.888 30 H 0.118 0.882 31 H 0.057 0.943 32 H 0.050 0.950 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.107 0.893 38 H 0.051 0.949 39 H 0.047 0.953 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.138 -20.626 -0.595 22.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.345 5.345 3 C 0.135 3.865 4 C -0.581 4.581 5 H 0.072 0.928 6 C -0.193 4.193 7 N -0.569 5.569 8 Si 0.794 3.206 9 H -0.191 1.191 10 H -0.207 1.207 11 H -0.193 1.193 12 C 0.279 3.721 13 O -0.484 6.484 14 C -0.165 4.165 15 C -0.128 4.128 16 C -0.129 4.129 17 H 0.107 0.893 18 C -0.160 4.160 19 C -0.187 4.187 20 C -0.025 4.025 21 O -0.319 6.319 22 C -0.016 4.016 23 H 0.089 0.911 24 H 0.115 0.885 25 H 0.082 0.918 26 H 0.040 0.960 27 H 0.014 0.986 28 H 0.076 0.924 29 H 0.130 0.870 30 H 0.136 0.864 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.106 0.894 37 H 0.125 0.875 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -8.659 -20.462 -0.632 22.228 hybrid contribution 0.976 0.988 0.591 1.509 sum -7.683 -19.475 -0.041 20.935 Atomic orbital electron populations 1.21942 0.77816 1.04061 1.02605 1.48241 1.08476 1.06475 1.71305 1.18744 0.91045 0.80662 0.96002 1.21751 1.36686 1.06650 0.93064 0.92826 1.25900 0.94904 0.96409 1.02132 1.70062 1.38992 1.14830 1.33058 0.85336 0.77890 0.78434 0.78947 1.19053 1.20729 1.19310 1.21606 0.87924 0.86901 0.75674 1.90625 1.16881 1.88295 1.52641 1.21775 0.99209 0.89409 1.06080 1.21228 0.97031 0.92274 1.02263 1.21723 0.97761 0.93841 0.99611 0.89337 1.21673 0.97612 0.94132 1.02586 1.22159 0.99893 0.97856 0.98816 1.22768 0.93634 0.89386 0.96685 1.87899 1.34706 1.14630 1.94673 1.22785 0.96994 0.85903 0.95932 0.91130 0.88505 0.91770 0.96006 0.98645 0.92382 0.86965 0.86394 0.92386 0.93121 0.91175 0.92218 0.90933 0.89409 0.87487 0.93089 0.93513 0.87725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.29 10.24 127.77 1.31 3.60 16 2 N -0.61 -26.36 2.86 -851.13 -2.43 -28.79 16 3 C 0.26 14.22 5.16 85.63 0.44 14.66 16 4 C -0.54 -31.92 9.39 25.60 0.24 -31.68 16 5 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 6 C 0.01 0.31 5.46 84.66 0.46 0.77 16 7 N -0.93 -57.11 13.29 21.45 0.28 -56.83 16 8 Si 0.97 45.44 29.54 68.60 2.03 47.46 16 9 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 10 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 11 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 12 C 0.49 20.39 7.67 87.66 0.67 21.06 16 13 O -0.60 -31.77 15.56 -3.04 -0.05 -31.81 16 14 C -0.13 -3.30 4.01 29.85 0.12 -3.18 16 15 C -0.09 -2.32 3.98 30.60 0.12 -2.20 16 16 C -0.11 -2.14 2.39 -10.71 -0.03 -2.16 16 17 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 18 C -0.12 -2.17 5.31 30.71 0.16 -2.00 16 19 C -0.15 -2.12 6.14 30.69 0.19 -1.93 16 20 C 0.05 0.79 6.84 72.01 0.49 1.29 16 21 O -0.40 -8.21 10.76 -148.98 -1.60 -9.82 16 22 C 0.06 1.17 5.83 72.01 0.42 1.59 16 23 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.10 2.09 6.44 -2.39 -0.02 2.07 16 25 H 0.06 2.01 8.07 -2.39 -0.02 1.99 16 26 H 0.02 1.22 8.07 -2.39 -0.02 1.20 16 27 H 0.00 -0.29 7.42 -2.39 -0.02 -0.31 16 28 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 29 H 0.11 2.42 5.89 -2.38 -0.01 2.41 16 30 H 0.12 2.41 8.11 -2.39 -0.02 2.39 16 31 H 0.06 1.67 8.10 -2.39 -0.02 1.65 16 32 H 0.05 1.51 8.10 -2.39 -0.02 1.49 16 33 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 34 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.05 0.94 8.14 -2.39 -0.02 0.93 16 40 H 0.10 1.80 6.70 -2.39 -0.02 1.78 16 Total: -1.00 -75.93 322.04 3.83 -72.10 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: 0.99 Total: 7.87 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: 4.61 Total: -0.19 kcal Atomic # 7 Polarization: -83.47 SS G_CDS: -2.15 Total: -85.62 kcal Atomic # 8 Polarization: -39.98 SS G_CDS: -1.65 Total: -41.63 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.46 kcal Total: -75.93 3.83 -72.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177763379.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.250 kcal (2) G-P(sol) polarization free energy of solvation -75.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds