Wall clock time and date at job start Mon Mar 30 2020 05:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47076 * 2 1 4 4 H 1.09001 * 109.47092 * 304.55352 * 3 2 1 5 5 C 1.50703 * 109.46737 * 184.55528 * 3 2 1 6 6 H 1.07994 * 119.99967 * 334.88576 * 5 3 2 7 7 C 1.37876 * 119.99661 * 154.89274 * 5 3 2 8 8 N 1.31514 * 119.99717 * 173.77171 * 7 5 3 9 9 Si 1.86801 * 120.00124 * 353.77073 * 7 5 3 10 10 H 1.48506 * 109.46696 * 84.75554 * 9 7 5 11 11 H 1.48495 * 109.47544 * 204.75697 * 9 7 5 12 12 H 1.48494 * 109.47014 * 324.76082 * 9 7 5 13 13 N 1.46898 * 109.47094 * 64.55585 * 3 2 1 14 14 N 1.45401 * 111.00285 * 59.99823 * 13 3 2 15 15 C 1.46898 * 111.00285 * 179.97438 * 14 13 3 16 16 H 1.09007 * 109.40007 * 14.44169 * 15 14 13 17 17 C 1.50174 * 109.40232 * 134.26921 * 15 14 13 18 18 O 1.21282 * 118.24414 * 282.56737 * 17 15 14 19 19 N 1.33351 * 123.50922 * 102.54740 * 17 15 14 20 20 C 1.45755 * 124.10747 * 2.20189 * 19 17 15 21 21 C 1.52918 * 110.48479 * 340.94520 * 20 19 17 22 22 C 1.53078 * 109.40068 * 254.69592 * 15 14 13 23 23 H 1.09000 * 109.68848 * 169.04617 * 22 15 14 24 24 C 1.53003 * 109.66944 * 48.50880 * 22 15 14 25 25 H 1.08999 * 109.47515 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.47591 * 300.00232 * 1 2 3 27 27 H 1.09002 * 109.47035 * 59.99955 * 1 2 3 28 28 H 1.08991 * 109.47291 * 239.99783 * 2 1 3 29 29 H 1.09003 * 109.46897 * 119.99275 * 2 1 3 30 30 H 0.97003 * 119.99451 * 179.97438 * 8 7 5 31 31 H 1.00895 * 110.99828 * 183.95468 * 13 3 2 32 32 H 1.00905 * 111.00010 * 56.04372 * 14 13 3 33 33 H 0.97001 * 117.94953 * 182.22533 * 19 17 15 34 34 H 1.08996 * 109.30188 * 220.63776 * 20 19 17 35 35 H 1.08998 * 109.30401 * 101.25543 * 20 19 17 36 36 H 1.09000 * 109.60622 * 170.51066 * 21 20 19 37 37 H 1.08996 * 109.60858 * 290.99791 * 21 20 19 38 38 H 1.08999 * 109.47051 * 295.91210 * 24 22 15 39 39 H 1.09000 * 109.47003 * 55.90930 * 24 22 15 40 40 H 1.09001 * 109.47061 * 175.90600 * 24 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6116 1.9794 -0.8464 5 6 3.5428 1.4440 -0.1128 6 1 4.1101 0.5874 0.2200 7 6 4.1933 2.5389 -0.6409 8 7 5.5073 2.5927 -0.6274 9 14 3.2085 3.9459 -1.3756 10 1 2.8004 4.8809 -0.2963 11 1 4.0433 4.6694 -2.3679 12 1 1.9986 3.4060 -2.0463 13 7 1.6422 2.1026 1.2506 14 7 2.1969 1.4119 2.4037 15 6 1.7997 2.0723 3.6543 16 1 0.9825 2.7653 3.4540 17 6 1.3448 1.0370 4.6424 18 8 0.2369 0.5623 4.5075 19 7 2.0941 0.6113 5.6601 20 6 3.4224 1.1260 5.9684 21 6 4.0174 1.8352 4.7512 22 6 2.9924 2.8457 4.2221 23 1 2.6587 3.4900 5.0354 24 6 3.6280 3.6946 3.1192 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 5.9650 3.3629 -0.9992 31 1 1.9112 3.0750 1.2477 32 1 3.2013 1.3426 2.3349 33 1 1.7326 -0.0848 6.2308 34 1 4.0714 0.2990 6.2563 35 1 3.3525 1.8305 6.7972 36 1 4.9292 2.3571 5.0414 37 1 4.2432 1.1033 3.9757 38 1 4.0335 3.0416 2.3463 39 1 2.8726 4.3482 2.6830 40 1 4.4305 4.2986 3.5425 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193218803.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:12 Heat of formation + Delta-G solvation = -42.170047 kcal Electronic energy + Delta-G solvation = -20706.153152 eV Core-core repulsion = 17748.139733 eV Total energy + Delta-G solvation = -2958.013419 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.169 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.45000 -38.62501 -37.50430 -35.59954 -34.22834 -33.01660 -30.89805 -29.65570 -28.47972 -26.48130 -24.51478 -24.32775 -22.38647 -21.02375 -19.74730 -18.93288 -18.34551 -17.55380 -17.14294 -16.70508 -16.42389 -15.99213 -15.44997 -15.08534 -14.82352 -14.41593 -14.19723 -14.01788 -13.77905 -13.63078 -13.52445 -13.36719 -13.00363 -12.70527 -12.32010 -12.17803 -12.08862 -11.87182 -11.81385 -11.62579 -11.44034 -11.09742 -10.88597 -10.78328 -9.96336 -9.80879 -8.97694 -8.33539 -6.40101 1.27506 1.34699 1.41031 1.58705 2.27011 2.38424 2.97677 3.15640 3.58480 3.68638 3.77126 3.93008 4.18598 4.40861 4.42083 4.47942 4.56082 4.58150 4.61043 4.79127 4.81513 4.88315 4.96075 5.02200 5.05464 5.21670 5.24419 5.37060 5.43512 5.49576 5.63379 5.73772 5.92597 6.02064 6.27595 6.38550 6.56863 6.68557 6.99795 7.29565 7.34006 8.81195 Molecular weight = 255.17amu Principal moments of inertia in cm(-1) A = 0.020357 B = 0.008798 C = 0.007049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.136931 B = 3181.852938 C = 3971.474026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.085 4.085 3 C 0.167 3.833 4 H 0.050 0.950 5 C -0.537 4.537 6 H 0.035 0.965 7 C 0.037 3.963 8 N -0.928 5.928 9 Si 0.917 3.083 10 H -0.257 1.257 11 H -0.290 1.290 12 H -0.255 1.255 13 N -0.495 5.495 14 N -0.491 5.491 15 C 0.074 3.926 16 H 0.097 0.903 17 C 0.539 3.461 18 O -0.592 6.592 19 N -0.710 5.710 20 C 0.114 3.886 21 C -0.134 4.134 22 C -0.112 4.112 23 H 0.104 0.896 24 C -0.154 4.154 25 H 0.048 0.952 26 H 0.051 0.949 27 H 0.046 0.954 28 H 0.042 0.958 29 H 0.047 0.953 30 H 0.266 0.734 31 H 0.292 0.708 32 H 0.324 0.676 33 H 0.404 0.596 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.106 0.894 37 H 0.051 0.949 38 H 0.040 0.960 39 H 0.047 0.953 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.596 2.097 12.947 13.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.123 4.123 3 C 0.059 3.941 4 H 0.067 0.933 5 C -0.577 4.577 6 H 0.053 0.947 7 C -0.164 4.164 8 N -0.567 5.567 9 Si 0.742 3.258 10 H -0.181 1.181 11 H -0.216 1.216 12 H -0.179 1.179 13 N -0.217 5.217 14 N -0.218 5.218 15 C -0.040 4.040 16 H 0.115 0.885 17 C 0.324 3.676 18 O -0.471 6.471 19 N -0.362 5.362 20 C -0.009 4.009 21 C -0.171 4.171 22 C -0.132 4.132 23 H 0.122 0.878 24 C -0.211 4.211 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.108 0.892 32 H 0.146 0.854 33 H 0.240 0.760 34 H 0.117 0.883 35 H 0.112 0.888 36 H 0.125 0.875 37 H 0.070 0.930 38 H 0.059 0.941 39 H 0.066 0.934 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.026 1.324 12.737 13.424 hybrid contribution 1.576 1.415 -0.730 2.241 sum -2.449 2.739 12.008 12.557 Atomic orbital electron populations 1.21566 0.95564 1.00353 1.01152 1.21159 0.95490 0.96025 0.99675 1.19769 0.92337 0.94097 0.87895 0.93262 1.21641 0.92127 1.02121 1.41798 0.94697 1.25695 0.95337 1.00182 0.95144 1.70041 1.08916 1.31395 1.46353 0.86183 0.79533 0.80191 0.79920 1.18109 1.21591 1.17894 1.65356 1.53699 1.02795 0.99872 1.64155 1.16164 1.45283 0.96217 1.21626 0.99124 0.93410 0.89873 0.88469 1.19990 0.84050 0.82297 0.81246 1.90677 1.23050 1.58718 1.74702 1.45417 1.18844 1.41518 1.30398 1.21582 0.81969 1.00085 0.97285 1.21956 0.99307 0.98113 0.97772 1.21897 0.94978 0.97235 0.99046 0.87759 1.21890 1.00984 0.99825 0.98439 0.93276 0.93016 0.93485 0.93881 0.93462 0.92515 0.89197 0.85376 0.76000 0.88256 0.88822 0.87534 0.93045 0.94088 0.93355 0.90408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.89 9.80 71.98 0.71 -4.18 16 2 C -0.09 -3.69 5.36 30.60 0.16 -3.53 16 3 C 0.17 7.69 2.07 44.17 0.09 7.78 16 4 H 0.05 2.32 5.45 -2.39 -0.01 2.31 16 5 C -0.54 -28.34 7.80 25.60 0.20 -28.14 16 6 H 0.03 2.09 8.05 -2.91 -0.02 2.06 16 7 C 0.04 1.98 5.47 84.65 0.46 2.44 16 8 N -0.93 -53.06 13.96 21.45 0.30 -52.76 16 9 Si 0.92 41.10 26.51 68.60 1.82 42.92 16 10 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 11 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 12 H -0.25 -11.09 6.31 99.48 0.63 -10.47 16 13 N -0.49 -20.86 6.14 -171.79 -1.06 -21.91 16 14 N -0.49 -19.40 5.44 -172.38 -0.94 -20.33 16 15 C 0.07 2.42 2.64 44.03 0.12 2.54 16 16 H 0.10 3.37 7.87 -2.38 -0.02 3.35 16 17 C 0.54 17.75 7.29 87.71 0.64 18.39 16 18 O -0.59 -24.70 17.78 -3.04 -0.05 -24.75 16 19 N -0.71 -16.46 5.45 -467.33 -2.55 -19.00 16 20 C 0.11 1.83 7.17 86.49 0.62 2.45 16 21 C -0.13 -2.90 5.24 30.68 0.16 -2.74 16 22 C -0.11 -2.83 2.56 -10.65 -0.03 -2.86 16 23 H 0.10 2.11 8.13 -2.39 -0.02 2.09 16 24 C -0.15 -4.64 7.95 71.98 0.57 -4.06 16 25 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.05 2.10 7.74 -2.38 -0.02 2.08 16 27 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.05 2.16 7.43 -2.39 -0.02 2.14 16 30 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 31 H 0.29 12.17 6.31 -204.85 -1.29 10.88 16 32 H 0.32 13.66 4.33 -204.84 -0.89 12.78 16 33 H 0.40 8.19 8.80 -92.71 -0.82 7.37 16 34 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.05 1.45 6.80 -2.39 -0.02 1.43 16 38 H 0.04 1.58 6.65 -2.39 -0.02 1.57 16 39 H 0.05 1.49 7.51 -2.39 -0.02 1.47 16 40 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -65.58 309.54 -0.79 -66.37 By element: Atomic # 1 Polarization: 43.39 SS G_CDS: -2.02 Total: 41.37 kcal Atomic # 6 Polarization: -15.61 SS G_CDS: 3.71 Total: -11.90 kcal Atomic # 7 Polarization: -109.77 SS G_CDS: -4.24 Total: -114.00 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: -0.05 Total: -24.75 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 1.82 Total: 42.92 kcal Total: -65.58 -0.79 -66.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193218803.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.204 kcal (2) G-P(sol) polarization free energy of solvation -65.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds