Wall clock time and date at job start Mon Mar 30 2020 04:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46899 * 111.00412 * 2 1 4 4 C 1.50702 * 109.47150 * 293.95444 * 3 2 1 5 5 H 1.08006 * 119.99404 * 359.97438 * 4 3 2 6 6 C 1.37874 * 120.00054 * 179.97438 * 4 3 2 7 7 N 1.31505 * 120.00145 * 359.97438 * 6 4 3 8 8 Si 1.86804 * 119.99534 * 179.97438 * 6 4 3 9 9 H 1.48496 * 109.47056 * 90.00082 * 8 6 4 10 10 H 1.48501 * 109.46955 * 209.99927 * 8 6 4 11 11 H 1.48497 * 109.47662 * 329.99761 * 8 6 4 12 12 C 1.46906 * 110.99966 * 123.95346 * 2 1 3 13 13 H 1.09004 * 109.64407 * 296.31850 * 12 2 1 14 14 C 1.53188 * 109.56178 * 176.04882 * 12 2 1 15 15 C 1.53090 * 109.30931 * 182.55499 * 14 12 2 16 16 O 1.43051 * 109.35546 * 58.22213 * 15 14 12 17 17 C 1.41965 * 114.27955 * 300.33879 * 16 15 14 18 18 C 1.54636 * 110.35873 * 296.11673 * 17 16 15 19 19 C 1.55069 * 100.88127 * 275.03157 * 18 17 16 20 20 O 1.43708 * 105.19767 * 324.18878 * 19 18 17 21 21 C 1.43409 * 109.93818 * 24.30119 * 20 19 18 22 22 C 1.52272 * 111.43299 * 58.84124 * 17 16 15 23 23 H 1.09008 * 109.47081 * 296.05324 * 1 2 3 24 24 H 1.08997 * 109.46820 * 56.04501 * 1 2 3 25 25 H 1.08991 * 109.46949 * 176.04710 * 1 2 3 26 26 H 1.09004 * 109.47432 * 53.94937 * 3 2 1 27 27 H 1.08994 * 109.47591 * 173.95076 * 3 2 1 28 28 H 0.97004 * 120.00040 * 180.02562 * 7 6 4 29 29 H 1.09002 * 109.50729 * 62.59308 * 14 12 2 30 30 H 1.09003 * 109.49928 * 302.51335 * 14 12 2 31 31 H 1.08998 * 109.49192 * 178.18786 * 15 14 12 32 32 H 1.09002 * 109.48743 * 298.26165 * 15 14 12 33 33 H 1.08997 * 111.13684 * 32.93426 * 18 17 16 34 34 H 1.08997 * 111.14137 * 157.12714 * 18 17 16 35 35 H 1.08996 * 110.29602 * 205.25457 * 19 18 17 36 36 H 1.09004 * 110.37954 * 83.16035 * 19 18 17 37 37 H 1.08997 * 109.85809 * 238.39019 * 21 20 19 38 38 H 1.09004 * 109.96263 * 117.37483 * 21 20 19 39 39 H 1.08992 * 109.50667 * 64.44367 * 22 17 16 40 40 H 1.09006 * 109.50524 * 184.57326 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2985 5 1 1.0747 1.5112 -2.0488 6 6 2.0270 3.3494 -1.5285 7 7 2.7113 4.0021 -0.6146 8 14 1.5831 4.1867 -3.1383 9 1 0.2705 4.8666 -2.9972 10 1 2.6253 5.1882 -3.4791 11 1 1.5009 3.1709 -4.2184 12 6 1.9954 -0.7660 1.1376 13 1 1.7018 -0.2849 2.0707 14 6 3.5236 -0.8277 1.0512 15 6 4.0618 -1.6803 2.2032 16 8 3.4896 -2.9895 2.1316 17 6 2.0725 -3.0125 2.2141 18 6 1.6053 -2.4897 3.5924 19 6 1.6993 -3.7828 4.4431 20 8 1.3138 -4.8460 3.5564 21 6 1.5451 -4.4561 2.1959 22 6 1.4369 -2.1932 1.0990 23 1 -0.3634 0.4514 0.9233 24 1 -0.3633 0.5740 -0.8524 25 1 -0.3633 -1.0251 -0.0708 26 1 1.5612 1.9274 0.8309 27 1 3.0797 1.3444 0.1083 28 1 2.9853 4.9185 -0.7763 29 1 3.9332 0.1799 1.1221 30 1 3.8166 -1.2736 0.1007 31 1 5.1466 -1.7529 2.1261 32 1 3.7944 -1.2181 3.1535 33 1 2.2792 -1.7209 3.9702 34 1 0.5799 -2.1229 3.5467 35 1 1.0145 -3.7291 5.2894 36 1 2.7206 -3.9336 4.7929 37 1 0.6125 -4.5026 1.6337 38 1 2.2849 -5.1148 1.7407 39 1 1.6683 -2.6481 0.1360 40 1 0.3562 -2.1651 1.2387 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227169345.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:37:24 Heat of formation + Delta-G solvation = -84.866187 kcal Electronic energy + Delta-G solvation = -20233.793997 eV Core-core repulsion = 17241.636383 eV Total energy + Delta-G solvation = -2992.157613 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 3.06 seconds Orbital eigenvalues (eV) -40.71005 -37.97430 -36.40160 -32.97834 -32.19139 -31.36379 -30.09896 -27.75014 -26.39433 -25.42822 -23.08885 -22.52829 -22.08407 -20.21717 -18.97263 -17.14872 -16.47026 -16.35939 -15.76479 -15.04230 -14.83165 -14.80249 -14.44786 -14.04986 -13.70890 -13.33196 -13.16179 -12.85018 -12.51669 -11.99482 -11.93139 -11.86030 -11.63411 -11.33782 -11.08876 -10.89286 -10.84449 -10.72631 -10.61447 -10.21267 -10.04295 -9.71575 -9.62548 -9.36949 -9.19441 -8.45999 -7.29630 -6.06532 -4.07496 3.29130 3.35615 3.40000 3.61473 3.80189 4.30837 4.41322 4.64978 4.79674 4.86295 5.06778 5.16067 5.19481 5.28831 5.34795 5.43160 5.48787 5.52960 5.61474 5.65456 5.78093 5.84462 5.88564 5.90094 6.09753 6.11543 6.22544 6.28365 6.46628 6.64499 6.71108 6.83008 7.25484 7.28021 7.31400 7.76495 8.04831 8.15266 8.51001 8.99984 9.56774 11.04419 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.043424 B = 0.004827 C = 0.004631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.652470 B = 5799.454384 C = 6044.999670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.535 5.535 3 C 0.189 3.811 4 C -0.507 4.507 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.088 3.912 13 H 0.030 0.970 14 C -0.149 4.149 15 C 0.061 3.939 16 O -0.367 6.367 17 C 0.091 3.909 18 C -0.185 4.185 19 C 0.057 3.943 20 O -0.385 6.385 21 C 0.067 3.933 22 C -0.129 4.129 23 H 0.009 0.991 24 H 0.075 0.925 25 H 0.047 0.953 26 H -0.012 1.012 27 H 0.036 0.964 28 H 0.261 0.739 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.049 0.951 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.062 0.938 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.096 -12.889 8.096 15.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.259 5.259 3 C 0.064 3.936 4 C -0.546 4.546 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.725 3.275 9 H -0.208 1.208 10 H -0.212 1.212 11 H -0.198 1.198 12 C -0.022 4.022 13 H 0.047 0.953 14 C -0.187 4.187 15 C -0.015 4.015 16 O -0.286 6.286 17 C 0.050 3.950 18 C -0.222 4.222 19 C -0.019 4.019 20 O -0.304 6.304 21 C -0.009 4.009 22 C -0.167 4.167 23 H 0.028 0.972 24 H 0.094 0.906 25 H 0.066 0.934 26 H 0.006 0.994 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.114 0.886 32 H 0.067 0.933 33 H 0.108 0.892 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.080 0.920 37 H 0.103 0.897 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.824 -13.294 7.731 15.400 hybrid contribution -0.484 1.648 -0.124 1.722 sum -1.308 -11.646 7.607 13.971 Atomic orbital electron populations 1.22247 0.88975 0.99589 1.00528 1.62177 1.06753 1.17791 1.39211 1.19803 0.95791 0.81416 0.96550 1.21163 1.34795 0.96902 1.01704 0.91889 1.24978 0.95273 0.97342 0.96985 1.69950 1.38439 1.11415 1.34110 0.86507 0.77996 0.79239 0.83748 1.20761 1.21237 1.19751 1.21526 0.94453 0.92869 0.93309 0.95252 1.22291 0.95638 1.01302 0.99494 1.22726 0.98125 0.82964 0.97706 1.87763 1.18140 1.28659 1.94037 1.22335 0.82660 0.95586 0.94431 1.23828 1.03318 0.98857 0.96234 1.23338 1.00175 0.85382 0.93045 1.88413 1.86456 1.39855 1.15722 1.23045 1.00453 0.93244 0.84184 1.22078 1.00050 0.95829 0.98777 0.97246 0.90640 0.93419 0.99395 0.94606 0.92925 0.89819 0.90209 0.88582 0.93258 0.89241 0.89489 0.89905 0.91979 0.89745 0.90208 0.89977 0.90798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.67 8.94 60.06 0.54 1.21 16 2 N -0.53 -11.25 4.62 -236.02 -1.09 -12.34 16 3 C 0.19 4.82 4.54 -4.98 -0.02 4.80 16 4 C -0.51 -14.06 8.46 -34.44 -0.29 -14.35 16 5 H 0.06 1.74 7.12 -52.48 -0.37 1.36 16 6 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -26.38 13.29 55.43 0.74 -25.65 16 8 Si 0.90 21.45 29.54 -169.99 -5.02 16.42 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 12 C 0.09 1.52 1.83 -67.45 -0.12 1.39 16 13 H 0.03 0.53 7.61 -51.93 -0.40 0.13 16 14 C -0.15 -2.47 5.11 -26.59 -0.14 -2.61 16 15 C 0.06 0.83 6.62 37.20 0.25 1.08 16 16 O -0.37 -5.25 10.24 -35.23 -0.36 -5.61 16 17 C 0.09 1.19 0.83 -89.77 -0.07 1.11 16 18 C -0.18 -2.18 5.33 -24.78 -0.13 -2.31 16 19 C 0.06 0.64 7.78 38.25 0.30 0.93 16 20 O -0.38 -5.10 11.37 -35.23 -0.40 -5.50 16 21 C 0.07 0.82 7.18 37.52 0.27 1.09 16 22 C -0.13 -1.87 3.51 -26.94 -0.09 -1.96 16 23 H 0.01 0.17 8.14 -51.92 -0.42 -0.25 16 24 H 0.07 1.55 6.76 -51.93 -0.35 1.20 16 25 H 0.05 0.76 6.36 -51.93 -0.33 0.43 16 26 H -0.01 -0.32 8.12 -51.93 -0.42 -0.75 16 27 H 0.04 0.96 5.89 -51.93 -0.31 0.65 16 28 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 29 H 0.08 1.52 6.35 -51.93 -0.33 1.19 16 30 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 31 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.05 0.62 6.26 -51.93 -0.33 0.30 16 33 H 0.09 1.04 6.11 -51.93 -0.32 0.72 16 34 H 0.09 0.99 7.93 -51.93 -0.41 0.58 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.92 7.78 -51.93 -0.40 0.51 16 38 H 0.08 0.97 8.06 -51.93 -0.42 0.55 16 39 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.07 1.00 6.54 -51.93 -0.34 0.66 16 LS Contribution 304.02 15.07 4.58 4.58 Total: -1.00 -30.01 304.02 -7.57 -37.58 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -6.40 Total: -1.33 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: 0.38 Total: -8.16 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: -0.36 Total: -37.99 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: -0.76 Total: -11.11 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.01 -7.57 -37.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227169345.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.287 kcal (2) G-P(sol) polarization free energy of solvation -30.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.06 seconds