Wall clock time and date at job start Mon Mar 30 2020 04:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45204 * 109.47112 * 2 1 4 4 C 1.34225 * 117.00459 * 179.97438 * 3 2 1 5 5 O 1.20830 * 119.99501 * 359.97438 * 4 3 2 6 6 C 1.50693 * 120.00147 * 179.97438 * 4 3 2 7 7 H 1.08999 * 109.45725 * 30.05078 * 6 4 3 8 8 C 1.53038 * 109.46229 * 270.07736 * 6 4 3 9 9 C 1.53119 * 109.27944 * 180.80581 * 8 6 4 10 10 C 1.53123 * 109.15998 * 57.65431 * 9 8 6 11 11 C 1.53030 * 109.31211 * 302.32815 * 10 9 8 12 12 N 1.46849 * 109.46155 * 150.02720 * 6 4 3 13 13 C 1.46901 * 110.99687 * 305.85127 * 12 6 4 14 14 H 1.08996 * 109.47176 * 50.56612 * 13 12 6 15 15 C 1.52999 * 109.47504 * 290.56178 * 13 12 6 16 16 C 1.50706 * 109.46848 * 170.56190 * 13 12 6 17 17 H 1.08003 * 119.99919 * 359.97438 * 16 13 12 18 18 C 1.37875 * 119.99940 * 180.02562 * 16 13 12 19 19 N 1.31509 * 120.00107 * 359.97438 * 18 16 13 20 20 Si 1.86797 * 119.99870 * 180.02562 * 18 16 13 21 21 H 1.48504 * 109.47554 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47417 * 119.99879 * 20 18 16 23 23 H 1.48495 * 109.47187 * 239.99905 * 20 18 16 24 24 H 1.09000 * 109.47290 * 60.00389 * 1 2 3 25 25 H 1.09004 * 109.46896 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47276 * 299.99717 * 1 2 3 27 27 H 1.08995 * 109.47276 * 240.00283 * 2 1 3 28 28 H 1.09000 * 109.47290 * 119.99611 * 2 1 3 29 29 H 1.08999 * 109.50247 * 60.86654 * 8 6 4 30 30 H 1.09003 * 109.53485 * 300.76682 * 8 6 4 31 31 H 1.09002 * 109.52060 * 297.74929 * 9 8 6 32 32 H 1.08997 * 109.57742 * 177.59497 * 9 8 6 33 33 H 1.09000 * 109.49769 * 62.28991 * 10 9 8 34 34 H 1.09004 * 109.50066 * 182.36553 * 10 9 8 35 35 H 1.09001 * 109.46545 * 179.21779 * 11 10 9 36 36 H 1.09009 * 109.46390 * 299.18307 * 11 10 9 37 37 H 1.08994 * 109.46813 * 60.00170 * 15 13 12 38 38 H 1.08996 * 109.46828 * 180.02562 * 15 13 12 39 39 H 1.09005 * 109.47014 * 300.00432 * 15 13 12 40 40 H 0.96998 * 120.00292 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5450 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9206 2.9375 0.0000 7 1 3.2370 3.6133 0.5139 8 6 4.1143 3.4086 -1.4431 9 6 4.7182 4.8157 -1.4389 10 6 6.0423 4.7919 -0.6702 11 6 5.7935 4.2813 0.7508 12 7 5.2156 2.9317 0.6923 13 6 5.0909 2.3540 2.0372 14 1 4.5767 1.3950 1.9745 15 6 4.2896 3.3050 2.9285 16 6 6.4633 2.1506 2.6258 17 1 7.3404 2.4228 2.0574 18 6 6.5991 1.6160 3.8894 19 7 5.5311 1.2841 4.5813 20 14 8.3002 1.3645 4.6192 21 1 9.3278 1.8153 3.6465 22 1 8.4233 2.1534 5.8712 23 1 8.5019 -0.0756 4.9197 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.1507 3.4278 -1.9522 30 1 4.7867 2.7256 -1.9624 31 1 4.0282 5.5067 -0.9546 32 1 4.8980 5.1391 -2.4641 33 1 6.7453 4.1306 -1.1767 34 1 6.4565 5.7993 -0.6276 35 1 6.7369 4.2502 1.2960 36 1 5.1011 4.9508 1.2613 37 1 3.2970 3.4521 2.5029 38 1 4.1975 2.8765 3.9265 39 1 4.8038 4.2641 2.9913 40 1 5.6267 0.9083 5.4704 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252895090.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:58 Heat of formation + Delta-G solvation = -88.953308 kcal Electronic energy + Delta-G solvation = -20494.959283 eV Core-core repulsion = 17502.624439 eV Total energy + Delta-G solvation = -2992.334844 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.26643 -38.25502 -35.92982 -34.36421 -31.94846 -31.69282 -30.58760 -28.23953 -25.30516 -24.67269 -23.44974 -22.59893 -20.70791 -20.32802 -18.64661 -17.18980 -16.37411 -16.02888 -15.84130 -15.08479 -14.31479 -14.06107 -14.01727 -13.62242 -13.33284 -12.95676 -12.78217 -12.63052 -12.31067 -11.97978 -11.73397 -11.55252 -11.37700 -11.08301 -10.89028 -10.83921 -10.67793 -10.55871 -10.30894 -10.23157 -10.14855 -9.95591 -9.71783 -9.37802 -8.82606 -8.32226 -7.21012 -5.96382 -3.98855 2.81292 3.04698 3.33506 3.41090 3.45934 4.43975 4.81696 5.00367 5.07275 5.13238 5.17455 5.30208 5.35779 5.41163 5.47500 5.61074 5.69296 5.85283 5.90824 5.97124 6.02753 6.05387 6.18247 6.23336 6.26720 6.40944 6.64162 6.72783 6.80311 6.83964 6.89047 7.10167 7.41595 7.68696 7.85185 8.14264 8.31349 8.41981 8.60426 9.05578 9.64874 11.11419 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.016949 B = 0.008331 C = 0.006159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.601186 B = 3359.955208 C = 4545.037265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.061 3.939 3 O -0.367 6.367 4 C 0.466 3.534 5 O -0.476 6.476 6 C 0.097 3.903 7 H 0.062 0.938 8 C -0.105 4.105 9 C -0.114 4.114 10 C -0.122 4.122 11 C 0.065 3.935 12 N -0.512 5.512 13 C 0.203 3.797 14 H 0.048 0.952 15 C -0.175 4.175 16 C -0.491 4.491 17 H 0.064 0.936 18 C 0.056 3.944 19 N -0.896 5.896 20 Si 0.897 3.103 21 H -0.272 1.272 22 H -0.286 1.286 23 H -0.285 1.285 24 H 0.063 0.937 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.090 0.910 36 H 0.028 0.972 37 H 0.005 0.995 38 H 0.090 0.910 39 H 0.033 0.967 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.398 4.152 -10.123 13.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.013 4.013 3 O -0.285 6.285 4 C 0.307 3.693 5 O -0.360 6.360 6 C -0.013 4.013 7 H 0.080 0.920 8 C -0.143 4.143 9 C -0.152 4.152 10 C -0.160 4.160 11 C -0.063 4.063 12 N -0.238 5.238 13 C 0.097 3.903 14 H 0.066 0.934 15 C -0.235 4.235 16 C -0.530 4.530 17 H 0.082 0.918 18 C -0.144 4.144 19 N -0.535 5.535 20 Si 0.726 3.274 21 H -0.197 1.197 22 H -0.212 1.212 23 H -0.211 1.211 24 H 0.082 0.918 25 H 0.094 0.906 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.108 0.892 36 H 0.046 0.954 37 H 0.024 0.976 38 H 0.108 0.892 39 H 0.052 0.948 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.913 3.430 -10.220 12.806 hybrid contribution 0.250 0.068 1.095 1.125 sum -6.662 3.498 -9.125 11.827 Atomic orbital electron populations 1.21778 0.93092 1.02553 1.03234 1.22923 0.94899 0.80992 1.02529 1.86484 1.25452 1.31798 1.84785 1.23618 0.79977 0.92970 0.72774 1.90681 1.59954 1.42623 1.42716 1.21141 0.93505 0.89207 0.97478 0.92038 1.21540 1.01124 0.97711 0.93959 1.21528 0.97590 0.95874 1.00174 1.21695 0.97018 1.00386 0.96856 1.22012 1.00596 0.88598 0.95078 1.62231 1.18650 1.20607 1.22297 1.19497 0.96920 0.93280 0.80615 0.93447 1.22460 0.95921 0.99974 1.05105 1.21066 0.91728 1.40659 0.99538 0.91814 1.24920 0.96809 0.95606 0.97071 1.69893 1.27961 1.43739 1.11946 0.86448 0.84438 0.77738 0.78825 1.19706 1.21230 1.21126 0.91811 0.90591 0.91519 0.91665 0.91154 0.91605 0.90617 0.92255 0.91924 0.91261 0.92131 0.89218 0.95357 0.97605 0.89152 0.94788 0.93144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 10.29 37.16 0.38 -1.24 16 2 C 0.06 0.91 6.19 37.16 0.23 1.14 16 3 O -0.37 -6.59 10.22 -39.25 -0.40 -6.99 16 4 C 0.47 9.62 5.89 36.00 0.21 9.83 16 5 O -0.48 -11.43 15.10 -18.75 -0.28 -11.71 16 6 C 0.10 1.85 2.00 -68.88 -0.14 1.71 16 7 H 0.06 1.16 6.86 -51.93 -0.36 0.80 16 8 C -0.11 -1.60 5.36 -26.65 -0.14 -1.74 16 9 C -0.11 -1.51 6.00 -26.61 -0.16 -1.67 16 10 C -0.12 -1.82 6.09 -26.65 -0.16 -1.99 16 11 C 0.06 1.24 4.56 -3.79 -0.02 1.22 16 12 N -0.51 -11.29 4.20 -221.45 -0.93 -12.22 16 13 C 0.20 5.27 1.95 -68.86 -0.13 5.14 16 14 H 0.05 1.41 5.79 -51.93 -0.30 1.11 16 15 C -0.18 -4.32 8.24 37.16 0.31 -4.01 16 16 C -0.49 -13.83 7.88 -34.44 -0.27 -14.10 16 17 H 0.06 1.79 7.08 -52.48 -0.37 1.42 16 18 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 19 N -0.90 -26.19 11.32 55.43 0.63 -25.56 16 20 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 21 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.92 8.13 -51.93 -0.42 0.50 16 28 H 0.07 1.15 8.13 -51.93 -0.42 0.72 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.09 1.86 6.66 -51.93 -0.35 1.52 16 36 H 0.03 0.53 6.58 -51.92 -0.34 0.19 16 37 H 0.00 0.11 6.79 -51.93 -0.35 -0.24 16 38 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 39 H 0.03 0.79 6.46 -51.93 -0.34 0.45 16 40 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 311.59 15.07 4.70 4.70 Total: -1.00 -31.44 311.59 -7.81 -39.25 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -6.50 Total: -0.11 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: 0.01 Total: -4.22 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: -0.30 Total: -37.78 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: -0.68 Total: -18.71 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.44 -7.81 -39.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252895090.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.705 kcal (2) G-P(sol) polarization free energy of solvation -31.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds