Wall clock time and date at job start Mon Mar 30 2020 04:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45204 * 109.47112 * 2 1 4 4 C 1.34225 * 117.00459 * 179.97438 * 3 2 1 5 5 O 1.20830 * 119.99501 * 359.97438 * 4 3 2 6 6 C 1.50693 * 120.00147 * 179.97438 * 4 3 2 7 7 H 1.08999 * 109.45725 * 30.05078 * 6 4 3 8 8 C 1.53038 * 109.46229 * 270.07736 * 6 4 3 9 9 C 1.53119 * 109.27944 * 180.80581 * 8 6 4 10 10 C 1.53123 * 109.15998 * 57.65431 * 9 8 6 11 11 C 1.53030 * 109.31211 * 302.32815 * 10 9 8 12 12 N 1.46849 * 109.46155 * 150.02720 * 6 4 3 13 13 C 1.46901 * 110.99687 * 305.85127 * 12 6 4 14 14 H 1.08996 * 109.47176 * 50.56612 * 13 12 6 15 15 C 1.52999 * 109.47504 * 290.56178 * 13 12 6 16 16 C 1.50706 * 109.46848 * 170.56190 * 13 12 6 17 17 H 1.08003 * 119.99919 * 359.97438 * 16 13 12 18 18 C 1.37875 * 119.99940 * 180.02562 * 16 13 12 19 19 N 1.31509 * 120.00107 * 359.97438 * 18 16 13 20 20 Si 1.86797 * 119.99870 * 180.02562 * 18 16 13 21 21 H 1.48504 * 109.47554 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47417 * 119.99879 * 20 18 16 23 23 H 1.48495 * 109.47187 * 239.99905 * 20 18 16 24 24 H 1.09000 * 109.47290 * 60.00389 * 1 2 3 25 25 H 1.09004 * 109.46896 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47276 * 299.99717 * 1 2 3 27 27 H 1.08995 * 109.47276 * 240.00283 * 2 1 3 28 28 H 1.09000 * 109.47290 * 119.99611 * 2 1 3 29 29 H 1.08999 * 109.50247 * 60.86654 * 8 6 4 30 30 H 1.09003 * 109.53485 * 300.76682 * 8 6 4 31 31 H 1.09002 * 109.52060 * 297.74929 * 9 8 6 32 32 H 1.08997 * 109.57742 * 177.59497 * 9 8 6 33 33 H 1.09000 * 109.49769 * 62.28991 * 10 9 8 34 34 H 1.09004 * 109.50066 * 182.36553 * 10 9 8 35 35 H 1.09001 * 109.46545 * 179.21779 * 11 10 9 36 36 H 1.09009 * 109.46390 * 299.18307 * 11 10 9 37 37 H 1.08994 * 109.46813 * 60.00170 * 15 13 12 38 38 H 1.08996 * 109.46828 * 180.02562 * 15 13 12 39 39 H 1.09005 * 109.47014 * 300.00432 * 15 13 12 40 40 H 0.96998 * 120.00292 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5450 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9206 2.9375 0.0000 7 1 3.2370 3.6133 0.5139 8 6 4.1143 3.4086 -1.4431 9 6 4.7182 4.8157 -1.4389 10 6 6.0423 4.7919 -0.6702 11 6 5.7935 4.2813 0.7508 12 7 5.2156 2.9317 0.6923 13 6 5.0909 2.3540 2.0372 14 1 4.5767 1.3950 1.9745 15 6 4.2896 3.3050 2.9285 16 6 6.4633 2.1506 2.6258 17 1 7.3404 2.4228 2.0574 18 6 6.5991 1.6160 3.8894 19 7 5.5311 1.2841 4.5813 20 14 8.3002 1.3645 4.6192 21 1 9.3278 1.8153 3.6465 22 1 8.4233 2.1534 5.8712 23 1 8.5019 -0.0756 4.9197 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.1507 3.4278 -1.9522 30 1 4.7867 2.7256 -1.9624 31 1 4.0282 5.5067 -0.9546 32 1 4.8980 5.1391 -2.4641 33 1 6.7453 4.1306 -1.1767 34 1 6.4565 5.7993 -0.6276 35 1 6.7369 4.2502 1.2960 36 1 5.1011 4.9508 1.2613 37 1 3.2970 3.4521 2.5029 38 1 4.1975 2.8765 3.9265 39 1 4.8038 4.2641 2.9913 40 1 5.6267 0.9083 5.4704 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252895090.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:57 Heat of formation + Delta-G solvation = -108.837942 kcal Electronic energy + Delta-G solvation = -20495.821545 eV Core-core repulsion = 17502.624439 eV Total energy + Delta-G solvation = -2993.197107 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.84000 -39.77507 -37.49790 -36.11810 -33.81324 -32.94823 -31.88650 -30.05538 -27.37970 -26.19325 -24.89900 -23.80682 -22.39772 -21.79297 -20.17429 -18.74365 -18.32323 -17.61765 -17.43039 -16.81046 -16.05320 -15.65010 -15.34821 -14.97425 -14.78237 -14.54811 -14.18366 -14.02212 -13.67655 -13.54424 -13.39038 -12.97396 -12.90474 -12.65044 -12.58812 -12.52769 -12.38958 -12.14165 -12.02443 -11.81290 -11.55979 -11.53430 -11.25534 -10.95530 -10.84758 -10.47947 -8.92437 -8.12878 -6.22915 1.20810 1.38463 1.40319 1.52589 1.64448 2.40776 3.16430 3.22540 3.70752 3.86114 3.96673 4.06537 4.09489 4.15618 4.29521 4.32155 4.36466 4.62986 4.66560 4.78823 4.83225 4.85496 4.90738 4.95477 4.99549 5.06018 5.11837 5.15510 5.21658 5.32605 5.44170 5.51416 5.52136 5.67681 5.74547 6.18553 6.43394 6.58857 6.87260 6.89005 7.45149 8.94187 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.016949 B = 0.008331 C = 0.006159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.601186 B = 3359.955208 C = 4545.037265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.050 3.950 3 O -0.364 6.364 4 C 0.464 3.536 5 O -0.521 6.521 6 C 0.093 3.907 7 H 0.068 0.932 8 C -0.100 4.100 9 C -0.107 4.107 10 C -0.115 4.115 11 C 0.063 3.937 12 N -0.528 5.528 13 C 0.210 3.790 14 H 0.004 0.996 15 C -0.159 4.159 16 C -0.508 4.508 17 H 0.056 0.944 18 C 0.007 3.993 19 N -0.924 5.924 20 Si 0.962 3.038 21 H -0.266 1.266 22 H -0.276 1.276 23 H -0.285 1.285 24 H 0.079 0.921 25 H 0.102 0.898 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.047 0.953 29 H 0.094 0.906 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.060 0.940 34 H 0.089 0.911 35 H 0.064 0.936 36 H 0.031 0.969 37 H 0.021 0.979 38 H 0.060 0.940 39 H 0.042 0.958 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.873 5.710 -11.600 15.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.023 4.023 3 O -0.281 6.281 4 C 0.307 3.693 5 O -0.408 6.408 6 C -0.017 4.017 7 H 0.086 0.914 8 C -0.138 4.138 9 C -0.144 4.144 10 C -0.153 4.153 11 C -0.064 4.064 12 N -0.254 5.254 13 C 0.103 3.897 14 H 0.021 0.979 15 C -0.219 4.219 16 C -0.547 4.547 17 H 0.074 0.926 18 C -0.191 4.191 19 N -0.564 5.564 20 Si 0.787 3.213 21 H -0.191 1.191 22 H -0.201 1.201 23 H -0.211 1.211 24 H 0.098 0.902 25 H 0.120 0.880 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.065 0.935 29 H 0.112 0.888 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.115 0.885 33 H 0.078 0.922 34 H 0.108 0.892 35 H 0.083 0.917 36 H 0.050 0.950 37 H 0.040 0.960 38 H 0.079 0.921 39 H 0.061 0.939 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.410 5.015 -11.714 14.740 hybrid contribution 0.330 -0.466 1.534 1.637 sum -7.080 4.549 -10.179 13.207 Atomic orbital electron populations 1.21799 0.89416 1.04526 1.03878 1.23272 0.97716 0.79508 1.01817 1.86481 1.23983 1.33593 1.84073 1.24073 0.80527 0.93251 0.71481 1.90652 1.61105 1.44074 1.45007 1.21376 0.92077 0.88429 0.99810 0.91443 1.21600 1.02644 0.98670 0.90862 1.21545 0.96351 0.94577 1.01974 1.21665 0.98286 1.01418 0.93894 1.22071 0.99131 0.87170 0.98004 1.62079 1.20797 1.22478 1.20038 1.19153 0.95476 0.92002 0.83069 0.97855 1.22232 0.96727 0.99726 1.03190 1.21345 0.92592 1.40823 0.99908 0.92553 1.25734 1.00540 0.95315 0.97513 1.70029 1.29909 1.44250 1.12202 0.85443 0.80025 0.77509 0.78274 1.19054 1.20131 1.21145 0.90198 0.87950 0.91760 0.90962 0.93452 0.88803 0.91820 0.90890 0.88548 0.92163 0.89240 0.91733 0.95037 0.96015 0.92086 0.93919 0.93074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 10.29 71.98 0.74 -2.04 16 2 C 0.05 1.51 6.19 71.98 0.45 1.96 16 3 O -0.36 -13.06 10.22 -51.37 -0.53 -13.58 16 4 C 0.46 19.48 5.89 71.23 0.42 19.90 16 5 O -0.52 -26.12 15.10 21.95 0.33 -25.79 16 6 C 0.09 3.50 2.00 44.19 0.09 3.59 16 7 H 0.07 2.46 6.86 -2.39 -0.02 2.44 16 8 C -0.10 -2.80 5.36 30.65 0.16 -2.63 16 9 C -0.11 -2.42 6.00 30.68 0.18 -2.23 16 10 C -0.11 -3.15 6.09 30.65 0.19 -2.96 16 11 C 0.06 2.38 4.56 86.31 0.39 2.77 16 12 N -0.53 -23.54 4.20 -854.54 -3.59 -27.13 16 13 C 0.21 11.29 1.95 44.17 0.09 11.38 16 14 H 0.00 0.22 5.79 -2.39 -0.01 0.21 16 15 C -0.16 -8.00 8.24 71.98 0.59 -7.41 16 16 C -0.51 -29.47 7.88 25.60 0.20 -29.27 16 17 H 0.06 3.26 7.08 -2.91 -0.02 3.24 16 18 C 0.01 0.39 5.30 84.66 0.45 0.84 16 19 N -0.92 -55.57 11.32 21.45 0.24 -55.33 16 20 Si 0.96 45.65 29.54 68.60 2.03 47.68 16 21 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 22 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 23 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 24 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.10 1.53 8.14 -2.38 -0.02 1.51 16 26 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.07 2.04 8.13 -2.39 -0.02 2.02 16 28 H 0.05 1.62 8.13 -2.39 -0.02 1.60 16 29 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.09 1.96 8.14 -2.38 -0.02 1.94 16 35 H 0.06 2.71 6.66 -2.39 -0.02 2.69 16 36 H 0.03 1.15 6.58 -2.38 -0.02 1.13 16 37 H 0.02 0.97 6.79 -2.39 -0.02 0.95 16 38 H 0.06 3.43 6.07 -2.39 -0.01 3.41 16 39 H 0.04 2.01 6.46 -2.38 -0.02 1.99 16 40 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -71.15 311.59 3.45 -67.70 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: 1.01 Total: 12.55 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: 3.95 Total: -6.10 kcal Atomic # 7 Polarization: -79.11 SS G_CDS: -3.35 Total: -82.46 kcal Atomic # 8 Polarization: -39.18 SS G_CDS: -0.19 Total: -39.37 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -71.15 3.45 -67.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252895090.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.135 kcal (2) G-P(sol) polarization free energy of solvation -71.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds