Wall clock time and date at job start Mon Mar 30 2020 04:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46929 * 110.98461 * 2 1 4 4 C 1.53037 * 109.47910 * 174.18240 * 3 2 1 5 5 C 1.53114 * 109.31211 * 59.15772 * 4 3 2 6 6 C 1.52999 * 109.52499 * 182.42298 * 5 4 3 7 7 C 1.53000 * 109.47362 * 185.00038 * 6 5 4 8 8 H 1.09004 * 110.09637 * 55.13815 * 7 6 5 9 9 O 1.44386 * 110.11316 * 293.54464 * 7 6 5 10 10 C 1.44841 * 103.23428 * 201.59871 * 9 7 6 11 11 C 1.54458 * 102.89379 * 36.61410 * 10 9 7 12 12 H 1.08999 * 110.31958 * 97.10732 * 11 10 9 13 13 C 1.50703 * 110.31510 * 219.20062 * 11 10 9 14 14 H 1.08001 * 120.00345 * 0.02562 * 13 11 10 15 15 C 1.37869 * 119.99597 * 180.02562 * 13 11 10 16 16 N 1.31510 * 120.00587 * 359.97438 * 15 13 11 17 17 Si 1.86807 * 119.99817 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.46961 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47259 * 119.99838 * 17 15 13 20 20 H 1.48502 * 109.46758 * 239.99945 * 17 15 13 21 21 O 1.43781 * 110.11393 * 176.80228 * 7 6 5 22 22 C 1.53126 * 109.16239 * 302.32855 * 5 4 3 23 23 C 1.46850 * 110.99740 * 235.77214 * 2 1 3 24 24 H 1.09001 * 109.47132 * 184.23155 * 1 2 3 25 25 H 1.08998 * 109.47131 * 304.22754 * 1 2 3 26 26 H 1.08995 * 109.47646 * 64.22924 * 1 2 3 27 27 H 1.08994 * 109.51866 * 54.15475 * 3 2 1 28 28 H 1.09007 * 109.45009 * 294.16157 * 3 2 1 29 29 H 1.09002 * 109.50283 * 299.19589 * 4 3 2 30 30 H 1.09003 * 109.50113 * 179.11776 * 4 3 2 31 31 H 1.08998 * 109.52777 * 62.29228 * 5 4 3 32 32 H 1.09004 * 109.46910 * 304.99663 * 6 5 4 33 33 H 1.09000 * 109.47329 * 64.99805 * 6 5 4 34 34 H 1.08999 * 110.72464 * 154.96010 * 10 9 7 35 35 H 1.08993 * 110.72734 * 278.26040 * 10 9 7 36 36 H 0.97000 * 120.00590 * 180.02562 * 16 15 13 37 37 H 1.08997 * 109.50509 * 177.59319 * 22 5 4 38 38 H 1.08997 * 109.49757 * 297.67568 * 22 5 4 39 39 H 1.08997 * 109.46198 * 65.82029 * 23 2 1 40 40 H 1.08999 * 109.45191 * 305.84745 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3718 0.0000 4 6 3.5181 1.3343 0.1462 5 6 4.1187 0.5367 -1.0146 6 6 5.6360 0.4448 -0.8407 7 6 6.2486 -0.2432 -2.0624 8 1 5.9542 0.2786 -2.9730 9 8 5.8238 -1.6219 -2.1208 10 6 6.8377 -2.2467 -2.9451 11 6 8.1285 -1.5131 -2.5189 12 1 8.6688 -2.0989 -1.7753 13 6 9.0041 -1.2556 -3.7181 14 1 8.6855 -1.5774 -4.6986 15 6 10.2120 -0.6091 -3.5634 16 7 10.5998 -0.2167 -2.3697 17 14 11.2972 -0.2892 -5.0500 18 1 10.6382 -0.8246 -6.2683 19 1 11.5088 1.1727 -5.2030 20 1 12.6074 -0.9619 -4.8602 21 8 7.6816 -0.2703 -1.9478 22 6 3.5181 -0.8718 -1.0206 23 6 1.9952 -0.7712 -1.1335 24 1 -0.3633 -1.0249 0.0758 25 1 -0.3633 0.5780 0.8497 26 1 -0.3634 0.4468 -0.9254 27 1 1.5639 1.9273 0.8327 28 1 1.7324 1.8614 -0.9378 29 1 3.7814 0.8572 1.0903 30 1 3.9103 2.3512 0.1305 31 1 3.8896 1.0354 -1.9563 32 1 6.0519 1.4475 -0.7419 33 1 5.8648 -0.1333 0.0546 34 1 6.9096 -3.3122 -2.7268 35 1 6.6312 -2.0814 -4.0024 36 1 11.4495 0.2385 -2.2609 37 1 3.9098 -1.4308 -1.8704 38 1 3.7819 -1.3838 -0.0953 39 1 1.7323 -0.2716 -2.0659 40 1 1.5633 -1.7719 -1.1235 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258506256.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:44 Heat of formation + Delta-G solvation = -120.862681 kcal Electronic energy + Delta-G solvation = -19819.082266 eV Core-core repulsion = 16825.363728 eV Total energy + Delta-G solvation = -2993.718538 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.04366 -39.81353 -36.06083 -35.48080 -34.54641 -31.89315 -31.55463 -29.77484 -26.91305 -26.37155 -24.12564 -23.72818 -22.89579 -22.00686 -20.62939 -18.88594 -17.71184 -17.29595 -16.87425 -16.53913 -16.23873 -15.96492 -15.52419 -15.09817 -15.04125 -14.54812 -14.32242 -13.92909 -13.79355 -13.30743 -13.24413 -13.03634 -12.91964 -12.82975 -12.77785 -12.43734 -12.30030 -12.18640 -12.05663 -11.58280 -11.29787 -11.17094 -11.08949 -10.90709 -10.71889 -10.05167 -9.24578 -8.20975 -6.45220 1.39995 1.40779 1.53714 2.37215 2.87958 2.99677 3.11150 3.41579 3.81742 3.90331 4.01079 4.18441 4.23260 4.28331 4.35734 4.39893 4.44613 4.55949 4.60546 4.65318 4.66600 4.71576 4.75474 4.80821 4.94924 4.98252 5.03280 5.10736 5.15156 5.25814 5.32155 5.40779 5.50268 5.59848 5.63443 6.05268 6.16689 6.19968 6.50397 6.80714 7.32754 8.87165 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.049302 B = 0.004371 C = 0.004201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.790729 B = 6404.567310 C = 6663.409554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.560 5.560 3 C 0.059 3.941 4 C -0.107 4.107 5 C -0.076 4.076 6 C -0.101 4.101 7 C 0.222 3.778 8 H 0.051 0.949 9 O -0.382 6.382 10 C 0.028 3.972 11 C 0.173 3.827 12 H 0.018 0.982 13 C -0.568 4.568 14 H 0.070 0.930 15 C 0.024 3.976 16 N -0.903 5.903 17 Si 0.968 3.032 18 H -0.259 1.259 19 H -0.280 1.280 20 H -0.275 1.275 21 O -0.402 6.402 22 C -0.110 4.110 23 C 0.061 3.939 24 H 0.072 0.928 25 H 0.077 0.923 26 H 0.026 0.974 27 H 0.088 0.912 28 H 0.033 0.967 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.062 0.938 34 H 0.107 0.893 35 H 0.069 0.931 36 H 0.264 0.736 37 H 0.077 0.923 38 H 0.054 0.946 39 H 0.031 0.969 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.668 1.798 2.534 17.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.285 5.285 3 C -0.069 4.069 4 C -0.145 4.145 5 C -0.095 4.095 6 C -0.139 4.139 7 C 0.127 3.873 8 H 0.069 0.931 9 O -0.303 6.303 10 C -0.049 4.049 11 C 0.118 3.882 12 H 0.036 0.964 13 C -0.605 4.605 14 H 0.088 0.912 15 C -0.179 4.179 16 N -0.541 5.541 17 Si 0.791 3.209 18 H -0.183 1.183 19 H -0.206 1.206 20 H -0.200 1.200 21 O -0.324 6.324 22 C -0.147 4.147 23 C -0.066 4.066 24 H 0.091 0.909 25 H 0.096 0.904 26 H 0.045 0.955 27 H 0.106 0.894 28 H 0.052 0.948 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.080 0.920 34 H 0.125 0.875 35 H 0.087 0.913 36 H 0.073 0.927 37 H 0.096 0.904 38 H 0.072 0.928 39 H 0.049 0.951 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -17.455 1.709 3.266 17.840 hybrid contribution 0.812 0.484 -1.455 1.735 sum -16.643 2.194 1.811 16.885 Atomic orbital electron populations 1.22391 0.86200 1.02772 1.00890 1.61972 1.08632 1.14162 1.43718 1.22107 0.94920 0.88924 1.00902 1.21603 0.94690 1.00233 0.97998 1.21054 0.92198 0.97006 0.99212 1.21705 0.95777 1.00304 0.96080 1.24283 0.81632 0.83853 0.97577 0.93118 1.89296 1.47135 1.22278 1.71576 1.24312 0.86185 0.99084 0.95276 1.20986 0.92285 0.82090 0.92877 0.96399 1.21697 1.03805 1.40810 0.94197 0.91162 1.26002 0.99028 0.93986 0.98880 1.70181 1.21691 1.38044 1.24137 0.85385 0.78351 0.77882 0.79235 1.18311 1.20600 1.19993 1.89090 1.18880 1.41840 1.82621 1.21726 0.93971 0.96312 1.02708 1.22070 0.95157 0.98288 0.91120 0.90936 0.90416 0.95518 0.89369 0.94829 0.91713 0.90405 0.91556 0.90393 0.91968 0.87452 0.91275 0.92684 0.90430 0.92766 0.95078 0.90359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 9.59 127.69 1.22 1.63 16 2 N -0.56 -12.11 4.91 -922.37 -4.53 -16.64 16 3 C 0.06 1.19 5.47 86.31 0.47 1.66 16 4 C -0.11 -2.47 5.38 30.64 0.16 -2.31 16 5 C -0.08 -2.11 2.25 -10.71 -0.02 -2.14 16 6 C -0.10 -3.52 4.94 30.59 0.15 -3.37 16 7 C 0.22 9.41 3.85 71.98 0.28 9.69 16 8 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 9 O -0.38 -15.49 8.25 -125.98 -1.04 -16.53 16 10 C 0.03 1.17 7.35 72.48 0.53 1.70 16 11 C 0.17 9.23 3.52 30.34 0.11 9.34 16 12 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 13 C -0.57 -31.83 8.78 25.60 0.22 -31.61 16 14 H 0.07 3.73 7.54 -2.91 -0.02 3.71 16 15 C 0.02 1.33 5.43 84.65 0.46 1.79 16 16 N -0.90 -54.79 13.05 21.44 0.28 -54.51 16 17 Si 0.97 43.47 29.54 68.60 2.03 45.50 16 18 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 19 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 20 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 21 O -0.40 -21.84 10.64 -125.98 -1.34 -23.18 16 22 C -0.11 -3.08 4.69 30.65 0.14 -2.94 16 23 C 0.06 1.43 5.47 86.33 0.47 1.90 16 24 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.08 1.07 8.09 -2.39 -0.02 1.05 16 26 H 0.03 0.41 8.14 -2.39 -0.02 0.39 16 27 H 0.09 1.48 8.09 -2.39 -0.02 1.46 16 28 H 0.03 0.66 8.14 -2.38 -0.02 0.64 16 29 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.07 1.81 8.14 -2.39 -0.02 1.80 16 32 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 33 H 0.06 2.28 8.14 -2.39 -0.02 2.27 16 34 H 0.11 3.97 8.14 -2.39 -0.02 3.95 16 35 H 0.07 2.79 7.68 -2.39 -0.02 2.77 16 36 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 37 H 0.08 2.44 5.49 -2.39 -0.01 2.43 16 38 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.08 1.69 8.12 -2.39 -0.02 1.67 16 Total: -1.00 -65.14 313.59 0.59 -64.56 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: 0.99 Total: 15.45 kcal Atomic # 6 Polarization: -18.85 SS G_CDS: 4.20 Total: -14.65 kcal Atomic # 7 Polarization: -66.90 SS G_CDS: -4.25 Total: -71.15 kcal Atomic # 8 Polarization: -37.32 SS G_CDS: -2.38 Total: -39.70 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -65.14 0.59 -64.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258506256.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.306 kcal (2) G-P(sol) polarization free energy of solvation -65.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds