Wall clock time and date at job start Mon Mar 30 2020 04:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46851 * 110.99882 * 2 1 4 4 C 1.53036 * 109.52435 * 174.16334 * 3 2 1 5 5 C 1.53118 * 109.27863 * 59.17888 * 4 3 2 6 6 C 1.53116 * 109.15992 * 302.34744 * 5 4 3 7 7 H 1.09000 * 109.50263 * 297.71296 * 6 5 4 8 8 C 1.52999 * 109.50281 * 177.63956 * 6 5 4 9 9 C 1.53004 * 109.47333 * 175.00048 * 8 6 5 10 10 H 1.09000 * 109.62836 * 54.29203 * 9 8 6 11 11 O 1.43749 * 109.63102 * 293.90248 * 9 8 6 12 12 C 1.44583 * 104.91945 * 215.70991 * 11 9 8 13 13 C 1.54911 * 101.63779 * 36.26935 * 12 11 9 14 14 H 1.09001 * 110.84438 * 82.82520 * 13 12 11 15 15 C 1.50698 * 110.69354 * 205.96075 * 13 12 11 16 16 H 1.07992 * 120.00076 * 355.11242 * 15 13 12 17 17 C 1.37876 * 119.99905 * 175.10809 * 15 13 12 18 18 N 1.31516 * 120.00394 * 179.97438 * 17 15 13 19 19 Si 1.86806 * 120.00106 * 359.97438 * 17 15 13 20 20 H 1.48501 * 109.46987 * 90.00100 * 19 17 15 21 21 H 1.48500 * 109.47124 * 209.99800 * 19 17 15 22 22 H 1.48499 * 109.46824 * 330.00026 * 19 17 15 23 23 O 1.43368 * 109.63115 * 174.68703 * 9 8 6 24 24 C 1.46851 * 110.99811 * 235.79353 * 2 1 3 25 25 H 1.09002 * 109.47401 * 56.04503 * 1 2 3 26 26 H 1.09001 * 109.46874 * 296.04515 * 1 2 3 27 27 H 1.09004 * 109.46970 * 176.04649 * 1 2 3 28 28 H 1.09008 * 109.46277 * 294.17746 * 3 2 1 29 29 H 1.09004 * 109.46518 * 54.14388 * 3 2 1 30 30 H 1.09000 * 109.50296 * 179.11929 * 4 3 2 31 31 H 1.08997 * 109.50225 * 299.23606 * 4 3 2 32 32 H 1.08994 * 109.52383 * 62.25280 * 5 4 3 33 33 H 1.09002 * 109.52037 * 182.44390 * 5 4 3 34 34 H 1.09009 * 109.46787 * 294.99752 * 8 6 5 35 35 H 1.09001 * 109.47853 * 54.99381 * 8 6 5 36 36 H 1.08997 * 111.08692 * 278.15239 * 12 11 9 37 37 H 1.09007 * 110.97629 * 154.33287 * 12 11 9 38 38 H 0.97001 * 120.00485 * 179.97438 * 18 17 15 39 39 H 1.08992 * 109.45970 * 305.84781 * 24 2 1 40 40 H 1.08994 * 109.46350 * 65.82190 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3343 0.1467 5 6 4.1188 0.5371 -1.0145 6 6 3.5181 -0.8713 -1.0209 7 1 3.7814 -1.3834 -0.0955 8 6 4.0688 -1.6560 -2.2133 9 6 3.5665 -3.0998 -2.1496 10 1 2.4788 -3.1063 -2.0795 11 8 4.1284 -3.7564 -1.0009 12 6 4.3568 -5.1194 -1.4259 13 6 4.7872 -4.9191 -2.9005 14 1 5.8469 -4.6722 -2.9651 15 6 4.4776 -6.1472 -3.7171 16 1 4.0897 -7.0324 -3.2353 17 6 4.6896 -6.1406 -5.0795 18 7 4.4199 -7.2125 -5.7922 19 14 5.3598 -4.6091 -5.9131 20 1 6.8436 -4.6655 -5.9330 21 1 4.8485 -4.5394 -7.3055 22 1 4.9203 -3.4049 -5.1634 23 8 3.9774 -3.8052 -3.3282 24 6 1.9952 -0.7707 -1.1338 25 1 -0.3634 0.5740 -0.8524 26 1 -0.3633 0.4512 0.9233 27 1 -0.3633 -1.0253 -0.0709 28 1 1.7324 1.8609 -0.9376 29 1 1.5634 1.9258 0.8330 30 1 3.9098 2.3513 0.1309 31 1 3.7814 0.8569 1.0905 32 1 3.8887 1.0356 -1.9560 33 1 5.1997 0.4716 -0.8906 34 1 3.7295 -1.1938 -3.1404 35 1 5.1584 -1.6486 -2.1814 36 1 3.4417 -5.7083 -1.3629 37 1 5.1558 -5.5805 -0.8453 38 1 4.5687 -7.2077 -6.7507 39 1 1.5635 -1.7714 -1.1242 40 1 1.7324 -0.2708 -2.0660 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258517733.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:53 Heat of formation + Delta-G solvation = -97.310553 kcal Electronic energy + Delta-G solvation = -19947.167934 eV Core-core repulsion = 16954.470692 eV Total energy + Delta-G solvation = -2992.697241 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.71192 -38.79946 -34.51284 -34.06652 -32.73551 -32.16729 -29.62375 -27.18776 -26.78659 -24.83243 -23.39659 -22.45771 -20.97687 -20.72011 -19.60403 -17.06780 -16.32302 -15.83887 -15.65290 -15.45546 -14.83570 -14.52205 -14.41472 -14.06720 -13.62911 -13.05477 -12.90024 -12.70260 -12.61086 -12.42505 -12.25200 -11.97159 -11.87516 -11.56281 -11.30803 -11.02634 -10.86082 -10.55863 -10.43777 -10.31053 -10.24599 -9.80697 -9.55334 -9.17296 -8.65496 -8.40310 -8.36318 -6.19796 -4.30720 3.33350 3.38836 3.63526 3.84159 4.39273 4.46107 4.61104 4.79253 4.81887 4.97525 5.05536 5.25718 5.29233 5.32423 5.37896 5.46527 5.56127 5.63144 5.66612 5.74198 5.75453 5.84931 5.88038 5.90147 5.94084 6.01418 6.12192 6.16422 6.23483 6.32916 6.40192 6.58415 6.65727 6.99974 7.02435 7.08252 7.53262 8.14088 8.31389 8.78796 9.42761 10.90257 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.032835 B = 0.005202 C = 0.005039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.551669 B = 5381.083962 C = 5555.536349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.543 5.543 3 C 0.055 3.945 4 C -0.116 4.116 5 C -0.116 4.116 6 C -0.079 4.079 7 H 0.087 0.913 8 C -0.124 4.124 9 C 0.225 3.775 10 H 0.064 0.936 11 O -0.395 6.395 12 C 0.033 3.967 13 C 0.148 3.852 14 H 0.041 0.959 15 C -0.532 4.532 16 H 0.082 0.918 17 C 0.088 3.912 18 N -0.888 5.888 19 Si 0.869 3.131 20 H -0.282 1.282 21 H -0.289 1.289 22 H -0.223 1.223 23 O -0.385 6.385 24 C 0.058 3.942 25 H 0.023 0.977 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.030 0.970 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.092 0.908 38 H 0.267 0.733 39 H 0.079 0.921 40 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.677 16.386 10.278 19.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.268 5.268 3 C -0.073 4.073 4 C -0.154 4.154 5 C -0.154 4.154 6 C -0.098 4.098 7 H 0.106 0.894 8 C -0.163 4.163 9 C 0.130 3.870 10 H 0.081 0.919 11 O -0.316 6.316 12 C -0.043 4.043 13 C 0.093 3.907 14 H 0.059 0.941 15 C -0.568 4.568 16 H 0.100 0.900 17 C -0.118 4.118 18 N -0.524 5.524 19 Si 0.695 3.305 20 H -0.208 1.208 21 H -0.215 1.215 22 H -0.146 1.146 23 O -0.307 6.307 24 C -0.069 4.069 25 H 0.041 0.959 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.048 0.952 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.110 0.890 38 H 0.077 0.923 39 H 0.097 0.903 40 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -3.546 16.235 10.535 19.676 hybrid contribution -0.047 0.855 -1.378 1.622 sum -3.592 17.090 9.157 19.719 Atomic orbital electron populations 1.22350 0.87446 1.02064 1.00448 1.61901 1.07378 1.13502 1.43971 1.22094 0.95847 0.89279 1.00038 1.21576 0.94285 0.99876 0.99650 1.21642 1.00143 0.95469 0.98141 1.21101 0.93581 0.95368 0.99769 0.89422 1.22028 1.01793 0.94416 0.98022 1.23848 0.95682 0.90354 0.77164 0.91858 1.89012 1.84058 1.23350 1.35215 1.24287 1.00997 0.82819 0.96205 1.21712 0.91733 0.85861 0.91383 0.94148 1.20905 1.46688 0.96258 0.92981 0.90017 1.25010 0.93351 0.96160 0.97255 1.69911 1.46616 1.28715 1.07177 0.86986 0.78692 0.86047 0.78795 1.20847 1.21548 1.14627 1.89288 1.70630 1.43349 1.27478 1.22245 0.95643 0.98220 0.90805 0.95873 0.91532 0.91245 0.95178 0.91092 0.91754 0.91028 0.92413 0.91629 0.90808 0.90927 0.91358 0.89016 0.92318 0.90303 0.95001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.62 60.07 0.58 0.83 16 2 N -0.54 -6.56 4.91 -242.95 -1.19 -7.75 16 3 C 0.06 0.57 5.46 -3.83 -0.02 0.55 16 4 C -0.12 -1.18 6.09 -26.65 -0.16 -1.34 16 5 C -0.12 -1.35 5.29 -26.61 -0.14 -1.49 16 6 C -0.08 -1.10 2.30 -90.54 -0.21 -1.30 16 7 H 0.09 1.35 7.74 -51.93 -0.40 0.95 16 8 C -0.12 -2.02 4.77 -26.73 -0.13 -2.15 16 9 C 0.23 4.40 3.89 37.16 0.14 4.55 16 10 H 0.06 1.19 6.36 -51.93 -0.33 0.86 16 11 O -0.40 -7.86 10.84 -59.05 -0.64 -8.50 16 12 C 0.03 0.68 7.37 38.17 0.28 0.96 16 13 C 0.15 3.58 2.89 -26.88 -0.08 3.50 16 14 H 0.04 0.98 7.70 -51.93 -0.40 0.58 16 15 C -0.53 -14.95 9.41 -34.44 -0.32 -15.27 16 16 H 0.08 2.43 8.02 -52.49 -0.42 2.00 16 17 C 0.09 2.53 5.47 -17.82 -0.10 2.43 16 18 N -0.89 -26.94 13.96 55.43 0.77 -26.16 16 19 Si 0.87 21.72 27.11 -169.99 -4.61 17.11 16 20 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 22 H -0.22 -5.45 5.37 56.52 0.30 -5.15 16 23 O -0.39 -9.17 7.95 -59.05 -0.47 -9.64 16 24 C 0.06 0.78 4.49 -3.83 -0.02 0.76 16 25 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.70 8.02 -51.93 -0.42 0.28 16 28 H 0.03 0.31 8.14 -51.92 -0.42 -0.11 16 29 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.07 1.18 8.14 -51.92 -0.42 0.75 16 35 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.07 1.41 8.04 -51.93 -0.42 0.99 16 37 H 0.09 1.68 8.14 -51.93 -0.42 1.25 16 38 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 39 H 0.08 1.12 6.40 -51.93 -0.33 0.79 16 40 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 309.68 15.07 4.67 4.67 Total: -1.00 -30.50 309.68 -8.67 -39.17 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -7.02 Total: -0.93 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: -0.17 Total: -7.96 kcal Atomic # 7 Polarization: -33.49 SS G_CDS: -0.42 Total: -33.91 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -1.11 Total: -18.14 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.61 Total: 17.11 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.50 -8.67 -39.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258517733.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.144 kcal (2) G-P(sol) polarization free energy of solvation -30.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds