Wall clock time and date at job start Mon Mar 30 2020 04:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46903 * 111.00430 * 2 1 4 4 C 1.52995 * 109.46946 * 66.04273 * 3 2 1 5 5 C 1.52998 * 109.47470 * 180.02562 * 4 3 2 6 6 C 1.53175 * 109.54388 * 294.56151 * 5 4 3 7 7 C 1.53094 * 109.16661 * 183.14993 * 6 5 4 8 8 O 1.42898 * 109.41211 * 57.60371 * 7 6 5 9 9 C 1.42897 * 114.10001 * 298.84343 * 8 7 6 10 10 C 1.53089 * 109.41656 * 61.16248 * 9 8 7 11 11 C 1.46901 * 111.00238 * 236.04324 * 2 1 3 12 12 C 1.50697 * 109.47133 * 293.95811 * 11 2 1 13 13 O 1.21433 * 120.00327 * 0.02562 * 12 11 2 14 14 C 1.41023 * 119.99793 * 179.97438 * 12 11 2 15 15 H 1.07997 * 120.00304 * 0.02562 * 14 12 11 16 16 C 1.40464 * 119.99977 * 180.02562 * 14 12 11 17 17 N 1.30526 * 119.99926 * 359.97438 * 16 14 12 18 18 Si 1.86804 * 120.00260 * 180.02562 * 16 14 12 19 19 H 1.48508 * 109.46907 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47121 * 119.99349 * 18 16 14 21 21 H 1.48503 * 109.46686 * 239.99874 * 18 16 14 22 22 H 1.09006 * 109.47096 * 60.00161 * 1 2 3 23 23 H 1.09000 * 109.47432 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46990 * 300.00073 * 1 2 3 25 25 H 1.09002 * 109.46754 * 306.04473 * 3 2 1 26 26 H 1.08994 * 109.47283 * 186.04414 * 3 2 1 27 27 H 1.09002 * 109.47230 * 60.00493 * 4 3 2 28 28 H 1.09007 * 109.47507 * 300.00126 * 4 3 2 29 29 H 1.09004 * 109.61242 * 54.77570 * 5 4 3 30 30 H 1.09004 * 109.52259 * 303.05258 * 6 5 4 31 31 H 1.09006 * 109.52330 * 63.24092 * 6 5 4 32 32 H 1.09006 * 109.47665 * 297.62062 * 7 6 5 33 33 H 1.08993 * 109.47955 * 177.58818 * 7 6 5 34 34 H 1.09002 * 109.48425 * 301.17758 * 9 8 7 35 35 H 1.09001 * 109.49443 * 181.15303 * 9 8 7 36 36 H 1.08997 * 109.52675 * 182.48845 * 10 9 8 37 37 H 1.08995 * 109.52428 * 62.29514 * 10 9 8 38 38 H 1.09008 * 109.46707 * 53.95671 * 11 2 1 39 39 H 1.09002 * 109.47513 * 173.95378 * 11 2 1 40 40 H 0.97001 * 119.99877 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 1.3182 5 6 2.1793 3.4860 1.3181 6 6 3.7105 3.4476 1.3026 7 6 4.2499 4.8782 1.3820 8 8 3.7514 5.5088 2.5634 9 6 2.3272 5.6156 2.6111 10 6 1.7105 4.2148 2.5812 11 6 1.9955 -0.7660 -1.1375 12 6 1.6369 -2.2204 -0.9728 13 8 1.0038 -2.5836 -0.0023 14 6 2.0357 -3.1596 -1.9463 15 1 2.5984 -2.8366 -2.8097 16 6 1.7010 -4.5151 -1.7931 17 7 1.0213 -4.9056 -0.7494 18 14 2.2298 -5.7593 -3.0822 19 1 2.9835 -5.0671 -4.1584 20 1 3.0972 -6.7868 -2.4520 21 1 1.0287 -6.4129 -3.6613 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.5612 1.9273 -0.8310 26 1 3.0797 1.3443 -0.1082 27 1 2.0658 1.5015 2.1492 28 1 0.5471 2.0845 1.4265 29 1 1.8190 4.0159 0.4363 30 1 4.0692 2.8751 2.1580 31 1 4.0538 2.9795 0.3800 32 1 3.9243 5.4386 0.5056 33 1 5.3391 4.8546 1.4145 34 1 1.9763 6.1857 1.7509 35 1 2.0311 6.1236 3.5289 36 1 0.6236 4.2953 2.5729 37 1 2.0287 3.6578 3.4623 38 1 1.5611 -0.3872 -2.0628 39 1 3.0797 -0.6612 -1.1756 40 1 0.7906 -5.8418 -0.6434 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259123382.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:23 Heat of formation + Delta-G solvation = -98.489601 kcal Electronic energy + Delta-G solvation = -19118.223722 eV Core-core repulsion = 16125.475353 eV Total energy + Delta-G solvation = -2992.748369 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 7.67 seconds Orbital eigenvalues (eV) -39.59997 -37.73452 -36.00614 -34.34683 -32.51549 -31.25950 -29.66275 -28.02684 -26.15488 -25.26114 -23.66197 -22.72025 -20.56577 -20.01089 -19.13344 -16.34464 -16.23470 -16.13548 -15.32547 -15.23881 -14.88261 -14.66153 -14.36999 -14.01279 -13.54786 -13.17490 -12.93249 -12.49252 -12.12875 -12.10485 -11.97208 -11.70651 -11.44609 -11.20910 -11.19695 -10.97863 -10.78460 -10.73330 -10.35798 -10.28357 -10.19265 -10.10079 -10.06107 -9.58347 -8.86303 -7.66542 -7.15249 -6.14951 -4.84420 3.05517 3.15641 3.20150 3.73080 4.04997 4.29502 4.44805 4.61947 4.73437 4.88609 4.92459 5.05658 5.26191 5.31538 5.38198 5.47745 5.51200 5.61220 5.62746 5.77876 5.80188 5.88004 5.95173 6.05086 6.07339 6.14501 6.21049 6.36225 6.44364 6.52943 6.58708 6.78551 6.94879 7.03871 7.29418 7.77583 7.90339 8.12237 8.88361 8.96457 10.41140 10.66099 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.050312 B = 0.003545 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.392312 B = 7896.404317 C = 8209.441540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.522 5.522 3 C 0.053 3.947 4 C -0.108 4.108 5 C -0.088 4.088 6 C -0.153 4.153 7 C 0.060 3.940 8 O -0.386 6.386 9 C 0.061 3.939 10 C -0.151 4.151 11 C 0.015 3.985 12 C 0.368 3.632 13 O -0.525 6.525 14 C -0.540 4.540 15 H 0.067 0.933 16 C 0.084 3.916 17 N -0.742 5.742 18 Si 0.904 3.096 19 H -0.262 1.262 20 H -0.274 1.274 21 H -0.275 1.275 22 H 0.005 0.995 23 H 0.095 0.905 24 H 0.053 0.947 25 H 0.020 0.980 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.047 0.953 33 H 0.092 0.908 34 H 0.047 0.953 35 H 0.091 0.909 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.030 0.970 39 H 0.072 0.928 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.588 16.618 2.112 16.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.246 5.246 3 C -0.075 4.075 4 C -0.146 4.146 5 C -0.107 4.107 6 C -0.190 4.190 7 C -0.016 4.016 8 O -0.305 6.305 9 C -0.016 4.016 10 C -0.188 4.188 11 C -0.113 4.113 12 C 0.261 3.739 13 O -0.412 6.412 14 C -0.572 4.572 15 H 0.085 0.915 16 C -0.139 4.139 17 N -0.370 5.370 18 Si 0.728 3.272 19 H -0.186 1.186 20 H -0.199 1.199 21 H -0.200 1.200 22 H 0.023 0.977 23 H 0.114 0.886 24 H 0.071 0.929 25 H 0.038 0.962 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.066 0.934 33 H 0.110 0.890 34 H 0.065 0.935 35 H 0.109 0.891 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.049 0.951 39 H 0.090 0.910 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.469 16.182 3.281 16.694 hybrid contribution -0.092 -0.248 -1.859 1.878 sum 2.377 15.933 1.422 16.172 Atomic orbital electron populations 1.22497 0.87635 1.04145 0.97896 1.61760 1.08091 1.10705 1.44002 1.22185 0.99787 0.89779 0.95781 1.21607 1.00839 0.93456 0.98690 1.21189 0.95156 0.96738 0.97603 1.22305 0.95900 0.97362 1.03464 1.22605 0.99054 0.92508 0.87468 1.87909 1.20997 1.79860 1.41748 1.22570 0.81111 0.96157 1.01732 1.22242 1.00860 0.96678 0.99064 1.22678 0.99334 0.99222 0.90079 1.19409 0.81505 0.85987 0.87034 1.90360 1.38753 1.80343 1.31710 1.20780 1.34827 0.93047 1.08570 0.91493 1.25972 0.93149 0.99395 0.95339 1.69966 1.25822 1.16649 1.24609 0.86379 0.79113 0.80396 0.81325 1.18560 1.19928 1.20000 0.97684 0.88634 0.92859 0.96173 0.91401 0.90986 0.91913 0.91447 0.90750 0.90521 0.93440 0.89023 0.93453 0.89122 0.90948 0.90844 0.95147 0.91001 0.91782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 8.96 60.06 0.54 1.07 16 2 N -0.52 -10.91 4.50 -244.37 -1.10 -12.01 16 3 C 0.05 0.85 4.72 -3.82 -0.02 0.84 16 4 C -0.11 -1.49 4.61 -26.73 -0.12 -1.61 16 5 C -0.09 -0.97 2.27 -90.44 -0.21 -1.18 16 6 C -0.15 -1.64 5.10 -26.59 -0.14 -1.78 16 7 C 0.06 0.59 6.84 37.21 0.25 0.85 16 8 O -0.39 -4.44 10.76 -35.23 -0.38 -4.82 16 9 C 0.06 0.57 6.84 37.20 0.25 0.83 16 10 C -0.15 -1.50 5.42 -26.59 -0.14 -1.65 16 11 C 0.02 0.35 5.32 -4.98 -0.03 0.32 16 12 C 0.37 10.34 6.60 -33.26 -0.22 10.12 16 13 O -0.52 -16.42 12.85 5.42 0.07 -16.35 16 14 C -0.54 -15.07 9.22 -37.69 -0.35 -15.42 16 15 H 0.07 1.73 7.85 -52.49 -0.41 1.32 16 16 C 0.08 2.30 5.50 -17.27 -0.10 2.20 16 17 N -0.74 -21.57 11.72 55.57 0.65 -20.92 16 18 Si 0.90 19.59 29.56 -169.99 -5.03 14.56 16 19 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 20 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 21 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 22 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 23 H 0.10 2.31 5.82 -51.93 -0.30 2.01 16 24 H 0.05 0.95 6.47 -51.93 -0.34 0.61 16 25 H 0.02 0.31 8.12 -51.93 -0.42 -0.11 16 26 H 0.07 1.05 6.45 -51.93 -0.33 0.71 16 27 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 28 H 0.06 0.87 6.55 -51.92 -0.34 0.53 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.08 0.81 6.75 -51.93 -0.35 0.46 16 32 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.03 0.66 8.12 -51.92 -0.42 0.24 16 39 H 0.07 1.53 7.93 -51.93 -0.41 1.12 16 40 H 0.27 7.08 8.29 -40.82 -0.34 6.75 16 LS Contribution 315.93 15.07 4.76 4.76 Total: -1.00 -32.19 315.93 -7.98 -40.17 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -6.69 Total: 0.01 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: -0.27 Total: -5.41 kcal Atomic # 7 Polarization: -32.48 SS G_CDS: -0.45 Total: -32.93 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -0.31 Total: -21.17 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.03 Total: 14.56 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.19 -7.98 -40.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259123382.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.319 kcal (2) G-P(sol) polarization free energy of solvation -32.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.67 seconds