Wall clock time and date at job start Mon Mar 30 2020 04:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46848 * 111.00200 * 2 1 4 4 C 1.53040 * 109.52316 * 185.83969 * 3 2 1 5 5 C 1.53118 * 109.27984 * 300.82088 * 4 3 2 6 6 C 1.53119 * 109.16042 * 57.65368 * 5 4 3 7 7 C 1.46855 * 110.99810 * 124.21043 * 2 1 3 8 8 H 1.08993 * 109.45869 * 294.16893 * 7 2 1 9 9 C 1.52995 * 109.46223 * 54.14347 * 7 2 1 10 10 H 1.09004 * 110.35700 * 171.64496 * 9 7 2 11 11 O 1.44401 * 110.40413 * 49.19844 * 9 7 2 12 12 C 1.44293 * 104.60801 * 201.87142 * 11 9 7 13 13 C 1.54172 * 104.94185 * 23.64026 * 12 11 9 14 14 H 1.08998 * 110.43345 * 241.08663 * 13 12 11 15 15 C 1.52994 * 110.34711 * 118.86574 * 13 12 11 16 16 C 1.50695 * 109.47079 * 178.02406 * 15 13 12 17 17 H 1.08004 * 120.00410 * 0.02562 * 16 15 13 18 18 C 1.37887 * 120.00022 * 179.97438 * 16 15 13 19 19 N 1.31516 * 119.99794 * 180.02562 * 18 16 15 20 20 Si 1.86794 * 119.99903 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.46912 * 89.99708 * 20 18 16 22 22 H 1.48506 * 109.47244 * 209.99686 * 20 18 16 23 23 H 1.48497 * 109.47326 * 329.99730 * 20 18 16 24 24 O 1.44288 * 104.93926 * 359.97438 * 13 12 11 25 25 H 1.09000 * 109.46492 * 286.24859 * 1 2 3 26 26 H 1.08997 * 109.46657 * 46.24707 * 1 2 3 27 27 H 1.09000 * 109.47195 * 166.25048 * 1 2 3 28 28 H 1.08998 * 109.46012 * 305.85740 * 3 2 1 29 29 H 1.08998 * 109.45948 * 65.83353 * 3 2 1 30 30 H 1.08998 * 109.50273 * 60.76060 * 4 3 2 31 31 H 1.08999 * 109.50229 * 180.83785 * 4 3 2 32 32 H 1.08994 * 109.52589 * 177.55916 * 5 4 3 33 33 H 1.09001 * 109.52002 * 297.75403 * 5 4 3 34 34 H 1.08999 * 109.50527 * 182.40878 * 6 5 4 35 35 H 1.08997 * 109.50527 * 62.28597 * 6 5 4 36 36 H 1.08998 * 110.34546 * 264.77126 * 12 11 9 37 37 H 1.08999 * 110.43515 * 142.55248 * 12 11 9 38 38 H 1.08996 * 109.47340 * 298.02616 * 15 13 12 39 39 H 1.09002 * 109.47553 * 58.02777 * 15 13 12 40 40 H 0.96997 * 119.99642 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3341 -0.1468 5 6 4.1189 0.5369 1.0143 6 6 3.5182 -0.8715 1.0208 7 6 1.9953 -0.7708 1.1338 8 1 1.7326 -0.2708 2.0660 9 6 1.3891 -2.1755 1.1204 10 1 1.8770 -2.8062 1.8636 11 8 1.5049 -2.7613 -0.1943 12 6 0.4857 -3.7821 -0.2290 13 6 -0.5510 -3.3447 0.8250 14 1 -0.6380 -4.0975 1.6085 15 6 -1.9107 -3.1045 0.1661 16 6 -2.9195 -2.7255 1.2195 17 1 -2.6206 -2.6619 2.2554 18 6 -4.2239 -2.4589 0.8608 19 7 -5.1041 -2.1276 1.7801 20 14 -4.7407 -2.5681 -0.9309 21 1 -5.2020 -3.9476 -1.2297 22 1 -5.8463 -1.6101 -1.1865 23 1 -3.5847 -2.2334 -1.8009 24 8 -0.0318 -2.1132 1.3687 25 1 -0.3632 0.2876 0.9867 26 1 -0.3632 0.7107 -0.7423 27 1 -0.3633 -0.9982 -0.2443 28 1 1.5635 1.9257 -0.8329 29 1 1.7327 1.8607 0.9376 30 1 3.7814 0.8567 -1.0906 31 1 3.9100 2.3512 -0.1318 32 1 5.1998 0.4713 0.8905 33 1 3.8887 1.0354 1.9560 34 1 3.9099 -1.4304 1.8707 35 1 3.7813 -1.3837 0.0953 36 1 0.9101 -4.7505 0.0359 37 1 0.0262 -3.8278 -1.2163 38 1 -1.8244 -2.2974 -0.5614 39 1 -2.2362 -4.0145 -0.3379 40 1 -6.0218 -1.9404 1.5278 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259933073.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:27 Heat of formation + Delta-G solvation = -89.942973 kcal Electronic energy + Delta-G solvation = -20573.659081 eV Core-core repulsion = 17581.281322 eV Total energy + Delta-G solvation = -2992.377759 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.28821 -38.29951 -34.56196 -33.40708 -33.06479 -31.89282 -30.46066 -27.21032 -26.54228 -24.51459 -22.94440 -22.71970 -21.35699 -20.47163 -19.35278 -17.21985 -16.33386 -16.02924 -15.61371 -15.31387 -14.89049 -14.25926 -14.16125 -14.04624 -13.70560 -13.22334 -12.89670 -12.79924 -12.44976 -12.24876 -11.73604 -11.71338 -11.67786 -11.44993 -11.19584 -10.99699 -10.72435 -10.65562 -10.49068 -10.36580 -10.19424 -9.75748 -9.39345 -9.28760 -8.85723 -8.54545 -7.93501 -6.03655 -4.01256 3.29229 3.37879 3.40778 3.98033 4.20524 4.25328 4.44321 4.80684 4.91192 4.99219 5.19192 5.23985 5.28231 5.31819 5.39587 5.46016 5.51608 5.64724 5.70220 5.81195 5.83120 5.89118 5.91652 6.06819 6.12225 6.14514 6.16496 6.28263 6.36063 6.44684 6.60775 6.84844 6.96540 7.20445 7.39600 7.46067 7.56405 7.76211 8.52815 9.02823 9.57271 11.09859 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.029806 B = 0.006198 C = 0.005749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.172083 B = 4516.465646 C = 4868.845695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.524 5.524 3 C 0.052 3.948 4 C -0.116 4.116 5 C -0.118 4.118 6 C -0.110 4.110 7 C 0.095 3.905 8 H 0.056 0.944 9 C 0.225 3.775 10 H 0.067 0.933 11 O -0.363 6.363 12 C 0.014 3.986 13 C 0.064 3.936 14 H 0.074 0.926 15 C -0.012 4.012 16 C -0.510 4.510 17 H 0.074 0.926 18 C 0.067 3.933 19 N -0.902 5.902 20 Si 0.875 3.125 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.264 1.264 24 O -0.352 6.352 25 H 0.031 0.969 26 H 0.049 0.951 27 H 0.099 0.901 28 H 0.073 0.927 29 H 0.028 0.972 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.062 0.938 37 H 0.093 0.907 38 H 0.029 0.971 39 H 0.026 0.974 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.968 2.767 -3.282 17.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.249 5.249 3 C -0.076 4.076 4 C -0.154 4.154 5 C -0.156 4.156 6 C -0.147 4.147 7 C -0.014 4.014 8 H 0.073 0.927 9 C 0.129 3.871 10 H 0.084 0.916 11 O -0.283 6.283 12 C -0.063 4.063 13 C 0.007 3.993 14 H 0.092 0.908 15 C -0.049 4.049 16 C -0.548 4.548 17 H 0.092 0.908 18 C -0.134 4.134 19 N -0.541 5.541 20 Si 0.702 3.298 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.189 1.189 24 O -0.273 6.273 25 H 0.050 0.950 26 H 0.068 0.932 27 H 0.117 0.883 28 H 0.091 0.909 29 H 0.046 0.954 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.080 0.920 37 H 0.111 0.889 38 H 0.047 0.953 39 H 0.044 0.956 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 16.954 2.826 -3.746 17.592 hybrid contribution -0.836 0.128 0.033 0.846 sum 16.118 2.953 -3.713 16.802 Atomic orbital electron populations 1.22676 0.85091 1.04526 0.99892 1.61935 1.09178 1.12025 1.41740 1.22133 0.95148 0.90070 1.00219 1.21587 0.94928 0.99614 0.99280 1.21551 0.99655 0.95762 0.98629 1.21553 0.93086 0.97281 1.02827 1.21680 0.94601 0.91905 0.93244 0.92669 1.24406 0.84548 0.93548 0.84591 0.91577 1.89267 1.54539 1.51012 1.33461 1.24200 0.88895 0.91403 1.01832 1.23590 0.95644 0.85892 0.94215 0.90825 1.19807 0.90884 0.97206 0.97045 1.20969 0.92662 1.46317 0.94872 0.90762 1.24992 0.96581 0.94721 0.97059 1.69909 1.03616 1.47544 1.33044 0.86860 0.78631 0.78114 0.86210 1.20294 1.21307 1.18905 1.89478 1.18336 1.39560 1.79898 0.95038 0.93184 0.88315 0.90900 0.95370 0.91090 0.91950 0.91818 0.92376 0.91704 0.90253 0.91986 0.88900 0.95253 0.95586 0.92765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 8.21 60.07 0.49 0.96 16 2 N -0.52 -8.44 4.43 -234.92 -1.04 -9.48 16 3 C 0.05 0.70 5.45 -3.83 -0.02 0.67 16 4 C -0.12 -1.27 6.09 -26.65 -0.16 -1.43 16 5 C -0.12 -1.23 6.00 -26.61 -0.16 -1.39 16 6 C -0.11 -1.33 5.32 -26.65 -0.14 -1.47 16 7 C 0.09 1.44 2.08 -67.72 -0.14 1.30 16 8 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 9 C 0.22 3.78 3.23 37.16 0.12 3.90 16 10 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 11 O -0.36 -6.32 10.60 -59.42 -0.63 -6.95 16 12 C 0.01 0.23 7.55 37.77 0.29 0.51 16 13 C 0.06 1.27 3.25 -26.12 -0.08 1.19 16 14 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 15 C -0.01 -0.29 3.41 -27.89 -0.10 -0.38 16 16 C -0.51 -14.41 9.50 -34.44 -0.33 -14.74 16 17 H 0.07 2.31 7.99 -52.48 -0.42 1.89 16 18 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 19 N -0.90 -27.83 13.96 55.43 0.77 -27.06 16 20 Si 0.87 21.50 27.47 -169.99 -4.67 16.83 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 24 O -0.35 -7.22 7.77 -59.42 -0.46 -7.69 16 25 H 0.03 0.62 7.87 -51.93 -0.41 0.21 16 26 H 0.05 0.86 7.91 -51.93 -0.41 0.45 16 27 H 0.10 2.08 3.89 -51.93 -0.20 1.88 16 28 H 0.07 0.93 7.98 -51.93 -0.41 0.51 16 29 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 1.04 8.03 -51.93 -0.42 0.62 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.09 1.50 7.71 -51.93 -0.40 1.10 16 38 H 0.03 0.71 5.87 -51.93 -0.30 0.40 16 39 H 0.03 0.58 7.57 -51.93 -0.39 0.19 16 40 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 305.11 15.07 4.60 4.60 Total: -1.00 -30.96 305.11 -8.53 -39.49 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -6.76 Total: -0.73 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: -0.33 Total: -9.02 kcal Atomic # 7 Polarization: -36.27 SS G_CDS: -0.27 Total: -36.54 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: -1.09 Total: -14.63 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.83 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.96 -8.53 -39.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259933073.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.453 kcal (2) G-P(sol) polarization free energy of solvation -30.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds