Wall clock time and date at job start Mon Mar 30 2020 04:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46848 * 111.00200 * 2 1 4 4 C 1.53040 * 109.52316 * 185.83969 * 3 2 1 5 5 C 1.53118 * 109.27984 * 300.82088 * 4 3 2 6 6 C 1.53119 * 109.16042 * 57.65368 * 5 4 3 7 7 C 1.46855 * 110.99810 * 124.21043 * 2 1 3 8 8 H 1.08993 * 109.45869 * 294.16893 * 7 2 1 9 9 C 1.52995 * 109.46223 * 54.14347 * 7 2 1 10 10 H 1.09004 * 110.35700 * 171.64496 * 9 7 2 11 11 O 1.44401 * 110.40413 * 49.19844 * 9 7 2 12 12 C 1.44293 * 104.60801 * 201.87142 * 11 9 7 13 13 C 1.54172 * 104.94185 * 23.64026 * 12 11 9 14 14 H 1.08998 * 110.43345 * 241.08663 * 13 12 11 15 15 C 1.52994 * 110.34711 * 118.86574 * 13 12 11 16 16 C 1.50695 * 109.47079 * 178.02406 * 15 13 12 17 17 H 1.08004 * 120.00410 * 0.02562 * 16 15 13 18 18 C 1.37887 * 120.00022 * 179.97438 * 16 15 13 19 19 N 1.31516 * 119.99794 * 180.02562 * 18 16 15 20 20 Si 1.86794 * 119.99903 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.46912 * 89.99708 * 20 18 16 22 22 H 1.48506 * 109.47244 * 209.99686 * 20 18 16 23 23 H 1.48497 * 109.47326 * 329.99730 * 20 18 16 24 24 O 1.44288 * 104.93926 * 359.97438 * 13 12 11 25 25 H 1.09000 * 109.46492 * 286.24859 * 1 2 3 26 26 H 1.08997 * 109.46657 * 46.24707 * 1 2 3 27 27 H 1.09000 * 109.47195 * 166.25048 * 1 2 3 28 28 H 1.08998 * 109.46012 * 305.85740 * 3 2 1 29 29 H 1.08998 * 109.45948 * 65.83353 * 3 2 1 30 30 H 1.08998 * 109.50273 * 60.76060 * 4 3 2 31 31 H 1.08999 * 109.50229 * 180.83785 * 4 3 2 32 32 H 1.08994 * 109.52589 * 177.55916 * 5 4 3 33 33 H 1.09001 * 109.52002 * 297.75403 * 5 4 3 34 34 H 1.08999 * 109.50527 * 182.40878 * 6 5 4 35 35 H 1.08997 * 109.50527 * 62.28597 * 6 5 4 36 36 H 1.08998 * 110.34546 * 264.77126 * 12 11 9 37 37 H 1.08999 * 110.43515 * 142.55248 * 12 11 9 38 38 H 1.08996 * 109.47340 * 298.02616 * 15 13 12 39 39 H 1.09002 * 109.47553 * 58.02777 * 15 13 12 40 40 H 0.96997 * 119.99642 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3341 -0.1468 5 6 4.1189 0.5369 1.0143 6 6 3.5182 -0.8715 1.0208 7 6 1.9953 -0.7708 1.1338 8 1 1.7326 -0.2708 2.0660 9 6 1.3891 -2.1755 1.1204 10 1 1.8770 -2.8062 1.8636 11 8 1.5049 -2.7613 -0.1943 12 6 0.4857 -3.7821 -0.2290 13 6 -0.5510 -3.3447 0.8250 14 1 -0.6380 -4.0975 1.6085 15 6 -1.9107 -3.1045 0.1661 16 6 -2.9195 -2.7255 1.2195 17 1 -2.6206 -2.6619 2.2554 18 6 -4.2239 -2.4589 0.8608 19 7 -5.1041 -2.1276 1.7801 20 14 -4.7407 -2.5681 -0.9309 21 1 -5.2020 -3.9476 -1.2297 22 1 -5.8463 -1.6101 -1.1865 23 1 -3.5847 -2.2334 -1.8009 24 8 -0.0318 -2.1132 1.3687 25 1 -0.3632 0.2876 0.9867 26 1 -0.3632 0.7107 -0.7423 27 1 -0.3633 -0.9982 -0.2443 28 1 1.5635 1.9257 -0.8329 29 1 1.7327 1.8607 0.9376 30 1 3.7814 0.8567 -1.0906 31 1 3.9100 2.3512 -0.1318 32 1 5.1998 0.4713 0.8905 33 1 3.8887 1.0354 1.9560 34 1 3.9099 -1.4304 1.8707 35 1 3.7813 -1.3837 0.0953 36 1 0.9101 -4.7505 0.0359 37 1 0.0262 -3.8278 -1.2163 38 1 -1.8244 -2.2974 -0.5614 39 1 -2.2362 -4.0145 -0.3379 40 1 -6.0218 -1.9404 1.5278 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259933073.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:26 Heat of formation + Delta-G solvation = -111.263124 kcal Electronic energy + Delta-G solvation = -20574.583592 eV Core-core repulsion = 17581.281322 eV Total energy + Delta-G solvation = -2993.302270 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.64431 -39.47239 -36.07841 -35.15502 -34.32839 -33.44504 -31.96768 -28.86158 -27.82985 -25.77951 -24.71660 -23.85226 -22.62678 -21.97879 -20.48461 -19.09634 -18.02405 -17.38764 -16.98918 -16.63790 -16.36176 -15.86359 -15.34373 -15.18041 -14.98245 -14.80888 -14.27439 -14.13380 -13.89840 -13.78350 -13.46606 -13.16792 -13.08361 -12.96981 -12.48606 -12.38542 -12.17117 -12.07980 -11.72209 -11.60456 -11.51088 -11.37667 -11.24856 -10.85190 -10.76454 -10.32960 -9.22867 -8.27721 -6.30841 1.34835 1.38088 1.49082 2.36078 2.66690 2.93304 2.98115 3.10248 3.74193 3.80361 3.84765 3.97492 4.03845 4.15297 4.23992 4.32868 4.37573 4.49305 4.56197 4.59375 4.62313 4.68841 4.80814 4.84095 4.90518 5.02559 5.05203 5.09430 5.23725 5.25422 5.25999 5.26839 5.45814 5.50367 5.61667 6.06457 6.15687 6.23831 6.29332 6.75223 7.31466 8.89595 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.029806 B = 0.006198 C = 0.005749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.172083 B = 4516.465646 C = 4868.845695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.528 5.528 3 C 0.047 3.953 4 C -0.111 4.111 5 C -0.116 4.116 6 C -0.103 4.103 7 C 0.091 3.909 8 H 0.045 0.955 9 C 0.220 3.780 10 H 0.087 0.913 11 O -0.369 6.369 12 C 0.023 3.977 13 C 0.061 3.939 14 H 0.072 0.928 15 C -0.008 4.008 16 C -0.515 4.515 17 H 0.026 0.974 18 C 0.004 3.996 19 N -0.953 5.953 20 Si 0.947 3.053 21 H -0.260 1.260 22 H -0.287 1.287 23 H -0.247 1.247 24 O -0.383 6.383 25 H 0.004 0.996 26 H 0.057 0.943 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.024 0.976 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.060 0.940 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.024 0.976 39 H 0.044 0.956 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.241 2.466 -5.159 20.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.253 5.253 3 C -0.080 4.080 4 C -0.148 4.148 5 C -0.153 4.153 6 C -0.140 4.140 7 C -0.018 4.018 8 H 0.062 0.938 9 C 0.125 3.875 10 H 0.105 0.895 11 O -0.289 6.289 12 C -0.054 4.054 13 C 0.004 3.996 14 H 0.090 0.910 15 C -0.045 4.045 16 C -0.553 4.553 17 H 0.045 0.955 18 C -0.192 4.192 19 N -0.594 5.594 20 Si 0.770 3.230 21 H -0.185 1.185 22 H -0.213 1.213 23 H -0.171 1.171 24 O -0.304 6.304 25 H 0.023 0.977 26 H 0.076 0.924 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.042 0.958 30 H 0.086 0.914 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.079 0.921 34 H 0.101 0.899 35 H 0.091 0.909 36 H 0.114 0.886 37 H 0.117 0.883 38 H 0.042 0.958 39 H 0.062 0.938 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 19.263 2.516 -5.625 20.225 hybrid contribution -1.520 0.256 0.731 1.706 sum 17.744 2.773 -4.893 18.614 Atomic orbital electron populations 1.22453 0.87241 1.03067 0.98465 1.61972 1.07278 1.13868 1.42199 1.22276 0.97136 0.88437 1.00177 1.21577 0.92708 1.01166 0.99377 1.21571 1.00899 0.94362 0.98509 1.21547 0.90417 0.98818 1.03254 1.21828 0.96740 0.90814 0.92440 0.93761 1.24726 0.82935 0.95005 0.84850 0.89546 1.89244 1.54477 1.51412 1.33763 1.24195 0.87840 0.92442 1.00894 1.23494 0.95097 0.85915 0.95129 0.91012 1.19723 0.91675 0.97437 0.95651 1.21226 0.94107 1.45892 0.94105 0.95539 1.25978 0.96551 0.94321 1.02351 1.70077 1.04190 1.49346 1.35822 0.85707 0.78551 0.78842 0.79880 1.18511 1.21308 1.17051 1.89465 1.20757 1.39929 1.80248 0.97696 0.92432 0.90686 0.90566 0.95768 0.91370 0.89629 0.89405 0.92090 0.89878 0.90914 0.88581 0.88252 0.95754 0.93779 0.92630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.35 8.21 127.69 1.05 2.40 16 2 N -0.53 -16.68 4.43 -897.15 -3.97 -20.65 16 3 C 0.05 1.20 5.45 86.33 0.47 1.67 16 4 C -0.11 -2.10 6.09 30.65 0.19 -1.92 16 5 C -0.12 -2.05 6.00 30.67 0.18 -1.86 16 6 C -0.10 -2.23 5.32 30.65 0.16 -2.07 16 7 C 0.09 2.68 2.08 44.94 0.09 2.77 16 8 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 9 C 0.22 7.19 3.23 71.98 0.23 7.43 16 10 H 0.09 2.45 8.14 -2.38 -0.02 2.43 16 11 O -0.37 -12.14 10.60 -125.85 -1.33 -13.48 16 12 C 0.02 0.71 7.55 72.38 0.55 1.26 16 13 C 0.06 2.41 3.25 30.99 0.10 2.51 16 14 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 15 C -0.01 -0.36 3.41 29.84 0.10 -0.26 16 16 C -0.52 -30.09 9.50 25.60 0.24 -29.84 16 17 H 0.03 1.74 7.99 -2.91 -0.02 1.72 16 18 C 0.00 0.25 5.47 84.66 0.46 0.71 16 19 N -0.95 -60.85 13.96 21.45 0.30 -60.55 16 20 Si 0.95 44.37 27.47 68.60 1.88 46.26 16 21 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 22 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 23 H -0.25 -10.78 6.54 99.48 0.65 -10.13 16 24 O -0.38 -16.00 7.77 -125.85 -0.98 -16.98 16 25 H 0.00 0.19 7.87 -2.39 -0.02 0.17 16 26 H 0.06 2.01 7.91 -2.39 -0.02 1.99 16 27 H 0.07 3.21 3.89 -2.39 -0.01 3.20 16 28 H 0.08 1.85 7.98 -2.39 -0.02 1.83 16 29 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.07 1.71 8.03 -2.39 -0.02 1.69 16 36 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.10 2.94 7.71 -2.39 -0.02 2.92 16 38 H 0.02 1.16 5.87 -2.39 -0.01 1.14 16 39 H 0.04 1.89 7.57 -2.39 -0.02 1.87 16 40 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 Total: -1.00 -69.49 305.11 0.67 -68.81 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: 0.94 Total: 13.78 kcal Atomic # 6 Polarization: -21.03 SS G_CDS: 3.83 Total: -17.20 kcal Atomic # 7 Polarization: -77.53 SS G_CDS: -3.67 Total: -81.20 kcal Atomic # 8 Polarization: -28.14 SS G_CDS: -2.31 Total: -30.45 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 1.88 Total: 46.26 kcal Total: -69.49 0.67 -68.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259933073.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.449 kcal (2) G-P(sol) polarization free energy of solvation -69.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds