Wall clock time and date at job start Mon Mar 30 2020 04:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.48532 * 110.99944 * 2 1 4 4 C 1.54938 * 103.22769 * 159.71857 * 3 2 1 5 5 C 1.54594 * 102.92271 * 322.58739 * 4 3 2 6 6 C 1.47910 * 111.00088 * 117.39511 * 2 1 3 7 7 H 1.09003 * 110.07664 * 333.59926 * 6 2 1 8 8 C 1.52990 * 109.91657 * 94.80258 * 6 2 1 9 9 C 1.52995 * 109.47495 * 183.41037 * 8 6 2 10 10 H 1.09000 * 109.50567 * 305.57527 * 9 8 6 11 11 O 1.43759 * 109.63019 * 65.88530 * 9 8 6 12 12 C 1.44781 * 104.81665 * 144.19733 * 11 9 8 13 13 C 1.54917 * 101.71887 * 323.89974 * 12 11 9 14 14 H 1.08997 * 110.69561 * 277.16042 * 13 12 11 15 15 C 1.53004 * 110.69497 * 153.95786 * 13 12 11 16 16 C 1.50705 * 109.46963 * 179.88273 * 15 13 12 17 17 H 1.07998 * 119.99678 * 0.02562 * 16 15 13 18 18 C 1.37871 * 119.99865 * 179.97438 * 16 15 13 19 19 N 1.31520 * 120.00099 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00011 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47163 * 59.99975 * 20 18 16 22 22 H 1.48500 * 109.47372 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47104 * 300.00081 * 20 18 16 24 24 O 1.43366 * 109.63725 * 185.25005 * 9 8 6 25 25 H 1.09003 * 109.47680 * 300.69106 * 1 2 3 26 26 H 1.09001 * 109.47231 * 60.68933 * 1 2 3 27 27 H 1.09002 * 109.47559 * 180.69251 * 1 2 3 28 28 H 1.09003 * 110.66937 * 41.28840 * 3 2 1 29 29 H 1.09004 * 110.81388 * 278.22246 * 3 2 1 30 30 H 1.09003 * 110.72684 * 204.22506 * 4 3 2 31 31 H 1.09003 * 110.72511 * 80.94493 * 4 3 2 32 32 H 1.09002 * 110.31015 * 263.04091 * 5 4 3 33 33 H 1.08997 * 110.31265 * 140.87078 * 5 4 3 34 34 H 1.09000 * 109.47080 * 63.40783 * 8 6 2 35 35 H 1.08999 * 109.47418 * 303.41159 * 8 6 2 36 36 H 1.09005 * 110.98069 * 82.00351 * 12 11 9 37 37 H 1.08995 * 110.98106 * 205.79097 * 12 11 9 38 38 H 1.08995 * 109.47374 * 299.88671 * 15 13 12 39 39 H 1.09003 * 109.47053 * 59.88859 * 15 13 12 40 40 H 0.97005 * 119.99587 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0012 1.3867 0.0000 4 6 3.4491 1.2107 0.5228 5 6 3.2982 0.1054 1.5931 6 6 1.9990 -0.6354 1.2260 7 1 1.2770 -0.5431 2.0374 8 6 2.2982 -2.1120 0.9601 9 6 2.7650 -2.7791 2.2555 10 1 3.6080 -2.2243 2.6673 11 8 1.6867 -2.7952 3.2061 12 6 1.8380 -4.0477 3.9163 13 6 2.3317 -4.9902 2.7904 14 1 1.4913 -5.3683 2.2083 15 6 3.1513 -6.1441 3.3717 16 6 3.6146 -7.0438 2.2549 17 1 3.3511 -6.8152 1.2328 18 6 4.3755 -8.1581 2.5380 19 7 4.6967 -8.4361 3.7827 20 14 4.9503 -9.2729 1.1538 21 1 5.7910 -8.4951 0.2085 22 1 5.7457 -10.3928 1.7179 23 1 3.7708 -9.8173 0.4344 24 8 3.1628 -4.1297 1.9855 25 1 -0.3634 0.5245 0.8837 26 1 -0.3634 0.5031 -0.8961 27 1 -0.3634 -1.0276 0.0124 28 1 1.4237 2.0205 0.6730 29 1 2.0040 1.8005 -1.0084 30 1 3.8122 2.1352 0.9716 31 1 4.1115 0.8836 -0.2787 32 1 3.2135 0.5486 2.5853 33 1 4.1469 -0.5775 1.5541 34 1 3.0814 -2.1940 0.2065 35 1 1.3957 -2.6068 0.6014 36 1 2.5832 -3.9606 4.7070 37 1 0.8830 -4.3864 4.3180 38 1 4.0173 -5.7449 3.8996 39 1 2.5340 -6.7147 4.0656 40 1 5.2318 -9.2204 3.9819 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260126080.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:47 Heat of formation + Delta-G solvation = -117.593200 kcal Electronic energy + Delta-G solvation = -19561.523631 eV Core-core repulsion = 16567.946868 eV Total energy + Delta-G solvation = -2993.576763 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.44704 -39.92776 -36.20246 -35.26010 -33.93268 -32.97890 -31.90585 -28.66297 -27.33714 -26.40563 -25.10505 -23.66669 -22.35724 -21.98170 -20.84340 -18.54772 -18.22898 -17.45995 -17.25979 -16.59161 -16.48828 -16.14575 -15.50920 -15.02084 -14.69378 -14.58643 -14.21713 -14.12771 -13.85893 -13.66939 -13.30739 -13.24696 -13.13145 -12.95899 -12.54585 -12.39906 -12.36037 -12.21435 -12.03899 -11.77889 -11.57982 -11.47210 -11.20501 -11.03854 -10.59175 -10.41120 -9.43509 -8.21386 -6.30189 1.39906 1.42852 1.50876 2.41098 2.52133 2.81199 3.12068 3.31529 3.62579 3.73262 3.75006 3.99563 4.03615 4.09922 4.17445 4.25491 4.34013 4.41502 4.52914 4.55229 4.57224 4.62907 4.72706 4.80339 4.88052 4.96099 4.97913 5.01290 5.07650 5.20803 5.21798 5.30707 5.32397 5.54351 5.74636 5.93293 6.08957 6.15562 6.28559 6.80902 7.37383 8.90193 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.032257 B = 0.004354 C = 0.004178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.819291 B = 6429.334937 C = 6699.565213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.536 5.536 3 C 0.035 3.965 4 C -0.119 4.119 5 C -0.134 4.134 6 C 0.077 3.923 7 H 0.053 0.947 8 C -0.103 4.103 9 C 0.226 3.774 10 H 0.084 0.916 11 O -0.387 6.387 12 C 0.027 3.973 13 C 0.065 3.935 14 H 0.070 0.930 15 C 0.029 3.971 16 C -0.534 4.534 17 H 0.052 0.948 18 C 0.004 3.996 19 N -0.931 5.931 20 Si 0.962 3.038 21 H -0.273 1.273 22 H -0.279 1.279 23 H -0.266 1.266 24 O -0.395 6.395 25 H 0.031 0.969 26 H 0.082 0.918 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.129 0.871 38 H 0.001 0.999 39 H 0.025 0.975 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.490 19.404 -4.375 20.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.260 5.260 3 C -0.093 4.093 4 C -0.157 4.157 5 C -0.172 4.172 6 C -0.032 4.032 7 H 0.071 0.929 8 C -0.142 4.142 9 C 0.130 3.870 10 H 0.101 0.899 11 O -0.308 6.308 12 C -0.049 4.049 13 C 0.008 3.992 14 H 0.088 0.912 15 C -0.008 4.008 16 C -0.572 4.572 17 H 0.070 0.930 18 C -0.194 4.194 19 N -0.571 5.571 20 Si 0.786 3.214 21 H -0.198 1.198 22 H -0.204 1.204 23 H -0.191 1.191 24 O -0.317 6.317 25 H 0.050 0.950 26 H 0.101 0.899 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.147 0.853 38 H 0.020 0.980 39 H 0.043 0.957 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.259 19.107 -4.854 20.683 hybrid contribution 0.095 -0.652 0.381 0.761 sum -6.164 18.454 -4.473 19.964 Atomic orbital electron populations 1.22513 0.87145 1.02008 1.01413 1.64554 1.08928 1.15924 1.36622 1.23302 0.95233 0.88839 1.01887 1.22491 0.96447 0.98681 0.98059 1.22563 0.96596 0.98158 0.99905 1.22176 0.96880 0.92901 0.91210 0.92918 1.21794 1.01988 0.95053 0.95336 1.24213 0.88318 0.84941 0.89531 0.89881 1.89094 1.51019 1.39577 1.51130 1.24524 1.03963 0.81546 0.94912 1.23839 0.92980 0.91815 0.90570 0.91168 1.19101 0.94471 0.91626 0.95635 1.21421 1.33009 1.08894 0.93859 0.93003 1.25858 0.96080 0.99300 0.98116 1.70053 1.39043 1.28208 1.19780 0.85550 0.78632 0.78063 0.79115 1.19824 1.20425 1.19129 1.88972 1.59874 1.16045 1.66760 0.94995 0.89916 0.92217 0.93023 0.88980 0.89110 0.90932 0.90504 0.91268 0.90173 0.92266 0.90530 0.85302 0.98037 0.95724 0.92631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.41 127.69 1.20 1.55 16 2 N -0.54 -12.02 5.18 -884.07 -4.58 -16.61 16 3 C 0.03 0.59 6.56 86.65 0.57 1.16 16 4 C -0.12 -2.00 7.06 31.80 0.22 -1.77 16 5 C -0.13 -2.81 5.94 31.47 0.19 -2.62 16 6 C 0.08 1.90 2.48 45.05 0.11 2.01 16 7 H 0.05 1.39 7.34 -2.39 -0.02 1.37 16 8 C -0.10 -3.13 4.93 30.59 0.15 -2.98 16 9 C 0.23 7.80 3.89 71.98 0.28 8.08 16 10 H 0.08 2.69 6.77 -2.39 -0.02 2.68 16 11 O -0.39 -13.08 10.87 -126.22 -1.37 -14.45 16 12 C 0.03 0.90 7.40 72.64 0.54 1.44 16 13 C 0.06 2.79 3.62 31.25 0.11 2.91 16 14 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 15 C 0.03 1.51 4.75 29.85 0.14 1.65 16 16 C -0.53 -31.10 8.95 25.60 0.23 -30.87 16 17 H 0.05 3.02 7.74 -2.91 -0.02 2.99 16 18 C 0.00 0.25 5.46 84.65 0.46 0.72 16 19 N -0.93 -56.27 13.29 21.45 0.28 -55.98 16 20 Si 0.96 45.19 29.54 68.60 2.03 47.22 16 21 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 22 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 23 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 24 O -0.39 -17.46 10.75 -126.22 -1.36 -18.81 16 25 H 0.03 0.58 8.00 -2.39 -0.02 0.56 16 26 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.05 0.80 7.99 -2.39 -0.02 0.78 16 29 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 30 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.07 1.57 6.85 -2.39 -0.02 1.55 16 34 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 35 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.08 2.57 8.04 -2.38 -0.02 2.55 16 37 H 0.13 3.64 8.14 -2.39 -0.02 3.62 16 38 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 39 H 0.02 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.26 15.06 8.31 -92.70 -0.77 14.29 16 Total: -1.00 -65.83 320.15 0.19 -65.64 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: 0.99 Total: 11.73 kcal Atomic # 6 Polarization: -22.94 SS G_CDS: 4.21 Total: -18.73 kcal Atomic # 7 Polarization: -68.29 SS G_CDS: -4.30 Total: -72.59 kcal Atomic # 8 Polarization: -30.54 SS G_CDS: -2.73 Total: -33.27 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -65.83 0.19 -65.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260126080.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.953 kcal (2) G-P(sol) polarization free energy of solvation -65.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds