Wall clock time and date at job start Mon Mar 30 2020 04:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46504 * 119.99943 * 2 1 4 4 C 1.53005 * 109.47034 * 270.00396 * 3 2 1 5 5 C 1.50697 * 109.46948 * 179.97438 * 4 3 2 6 6 H 1.08007 * 120.00264 * 0.02562 * 5 4 3 7 7 C 1.37882 * 119.99955 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99855 * 180.02562 * 7 5 4 9 9 Si 1.86794 * 119.99816 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.47222 * 90.00239 * 9 7 5 11 11 H 1.48503 * 109.47039 * 210.00236 * 9 7 5 12 12 H 1.48500 * 109.47290 * 329.99997 * 9 7 5 13 13 C 1.34776 * 120.00428 * 180.02562 * 2 1 3 14 14 O 1.21283 * 120.00127 * 179.97438 * 13 2 1 15 15 C 1.50697 * 119.99699 * 359.97438 * 13 2 1 16 16 C 1.52999 * 109.47386 * 179.97438 * 15 13 2 17 17 H 1.08999 * 109.52160 * 305.12821 * 16 15 13 18 18 C 1.53178 * 109.52605 * 184.99784 * 16 15 13 19 19 C 1.53178 * 109.03511 * 183.05016 * 18 16 15 20 20 C 1.53093 * 109.16255 * 56.98447 * 19 18 16 21 21 O 1.42904 * 109.42351 * 302.38111 * 20 19 18 22 22 C 1.42930 * 114.08305 * 61.15476 * 21 20 19 23 23 H 1.09007 * 109.46778 * 270.00024 * 1 2 3 24 24 H 1.09001 * 109.47764 * 29.99304 * 1 2 3 25 25 H 1.09003 * 109.47556 * 150.00240 * 1 2 3 26 26 H 1.08998 * 109.47054 * 30.00018 * 3 2 1 27 27 H 1.08999 * 109.47242 * 150.00605 * 3 2 1 28 28 H 1.08998 * 109.46891 * 299.99721 * 4 3 2 29 29 H 1.08999 * 109.46936 * 60.00020 * 4 3 2 30 30 H 0.96996 * 119.99755 * 180.02562 * 8 7 5 31 31 H 1.09000 * 109.47270 * 59.99644 * 15 13 2 32 32 H 1.09001 * 109.47506 * 300.00041 * 15 13 2 33 33 H 1.09002 * 109.54068 * 63.18427 * 18 16 15 34 34 H 1.08996 * 109.54450 * 302.92001 * 18 16 15 35 35 H 1.09000 * 109.52619 * 297.07706 * 19 18 16 36 36 H 1.08997 * 109.57176 * 176.91900 * 19 18 16 37 37 H 1.09002 * 109.48198 * 62.37219 * 20 19 18 38 38 H 1.08999 * 109.48029 * 182.39833 * 20 19 18 39 39 H 1.09003 * 109.47243 * 178.86599 * 22 21 20 40 40 H 1.08992 * 109.48518 * 58.83967 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4524 1.7105 -1.4426 5 6 3.2053 3.0159 -1.4425 6 1 3.4754 3.4835 -0.5072 7 6 3.5494 3.6133 -2.6366 8 7 4.2069 4.7523 -2.6366 9 14 3.0828 2.8042 -4.2543 10 1 1.7461 3.2888 -4.6828 11 1 4.0900 3.1500 -5.2893 12 1 3.0415 1.3304 -4.0768 13 6 2.1389 -1.1671 -0.0005 14 8 3.3517 -1.1671 -0.0010 15 6 1.3855 -2.4722 -0.0005 16 6 2.3797 -3.6352 -0.0018 17 1 3.0650 -3.5275 -0.8425 18 6 1.6191 -4.9588 -0.1276 19 6 2.6175 -6.1180 -0.0510 20 6 3.4011 -6.0205 1.2606 21 8 4.0596 -4.7540 1.3278 22 6 3.1724 -3.6336 1.3079 23 1 -0.3633 0.0000 1.0277 24 1 -0.3635 0.8900 -0.5137 25 1 -0.3634 -0.8900 -0.5138 26 1 1.6084 2.0284 0.5138 27 1 3.1499 1.1384 0.5137 28 1 3.0414 0.9509 -1.9564 29 1 1.4999 1.8408 -1.9563 30 1 4.4486 5.1727 -3.4766 31 1 0.7584 -2.5298 -0.8902 32 1 0.7591 -2.5303 0.8897 33 1 1.0970 -4.9898 -1.0839 34 1 0.8984 -5.0440 0.6857 35 1 3.3077 -6.0605 -0.8927 36 1 2.0801 -7.0656 -0.0847 37 1 2.7151 -6.1187 2.1020 38 1 4.1426 -6.8183 1.3011 39 1 3.7494 -2.7118 1.3825 40 1 2.4835 -3.7003 2.1499 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260251842.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:16 Heat of formation + Delta-G solvation = -100.224537 kcal Electronic energy + Delta-G solvation = -19449.572336 eV Core-core repulsion = 16456.748735 eV Total energy + Delta-G solvation = -2992.823601 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.10600 -38.85244 -35.57558 -34.44463 -33.05700 -32.16903 -30.57177 -27.76820 -26.67660 -25.10679 -24.66758 -22.65398 -20.85118 -20.15643 -18.69360 -16.95680 -16.70946 -16.41198 -16.07681 -15.46829 -15.34431 -14.73707 -14.34871 -14.10546 -13.83528 -13.18031 -12.92435 -12.74711 -12.69790 -12.61067 -12.49946 -12.10064 -11.85738 -11.52194 -11.36175 -11.06726 -10.98481 -10.86690 -10.44884 -10.36321 -10.00894 -9.84102 -9.51734 -9.37315 -9.15317 -8.53711 -8.14844 -6.04552 -4.02954 2.95537 3.30081 3.38414 3.39087 3.44512 3.87262 4.45929 4.52095 4.58073 4.66323 4.78125 4.92085 5.02215 5.20184 5.28818 5.29889 5.31269 5.38121 5.45738 5.49582 5.53380 5.63772 5.72363 5.79657 5.85153 5.88196 6.03049 6.21202 6.26626 6.38189 6.66087 6.76668 7.18400 7.22593 7.39486 7.75501 7.83394 8.49604 8.56498 8.99024 9.57674 11.08751 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.030042 B = 0.004486 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.799035 B = 6240.589079 C = 6392.289279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.616 5.616 3 C 0.125 3.875 4 C -0.023 4.023 5 C -0.519 4.519 6 H 0.073 0.927 7 C 0.069 3.931 8 N -0.902 5.902 9 Si 0.880 3.120 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.266 1.266 13 C 0.504 3.496 14 O -0.533 6.533 15 C -0.134 4.134 16 C -0.108 4.108 17 H 0.089 0.911 18 C -0.118 4.118 19 C -0.156 4.156 20 C 0.057 3.943 21 O -0.379 6.379 22 C 0.062 3.938 23 H 0.052 0.948 24 H 0.074 0.926 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.021 0.979 29 H 0.010 0.990 30 H 0.263 0.737 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.046 0.954 38 H 0.090 0.910 39 H 0.115 0.885 40 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.386 -20.519 6.716 23.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.349 5.349 3 C 0.004 3.996 4 C -0.061 4.061 5 C -0.558 4.558 6 H 0.092 0.908 7 C -0.132 4.132 8 N -0.541 5.541 9 Si 0.707 3.293 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.191 1.191 13 C 0.291 3.709 14 O -0.410 6.410 15 C -0.174 4.174 16 C -0.127 4.127 17 H 0.107 0.893 18 C -0.155 4.155 19 C -0.193 4.193 20 C -0.020 4.020 21 O -0.298 6.298 22 C -0.014 4.014 23 H 0.070 0.930 24 H 0.093 0.907 25 H 0.083 0.917 26 H 0.087 0.913 27 H 0.097 0.903 28 H 0.039 0.961 29 H 0.028 0.972 30 H 0.073 0.927 31 H 0.112 0.888 32 H 0.108 0.892 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.065 0.935 38 H 0.108 0.892 39 H 0.133 0.867 40 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -9.463 -20.341 6.621 23.391 hybrid contribution -0.772 -0.229 -1.080 1.347 sum -10.235 -20.570 5.541 23.635 Atomic orbital electron populations 1.21757 0.80440 1.03141 1.01236 1.48150 1.06728 1.07239 1.72814 1.21649 0.96254 0.81527 1.00126 1.19858 0.96454 0.97351 0.92420 1.20984 1.35809 1.04335 0.94665 0.90847 1.24976 0.94522 0.94617 0.99101 1.69908 1.39804 1.17422 1.26925 0.86770 0.78261 0.80563 0.83664 1.20354 1.21273 1.19112 1.20571 0.88241 0.85317 0.76762 1.90695 1.13794 1.87132 1.49346 1.21709 0.99049 0.92547 1.04073 1.21564 0.97178 0.93004 1.00979 0.89263 1.21657 0.97637 0.93986 1.02234 1.22180 0.98986 0.98686 0.99477 1.22563 0.96706 0.86784 0.95962 1.88004 1.33610 1.13721 1.94424 1.22881 0.93615 0.90241 0.94651 0.92959 0.90674 0.91656 0.91306 0.90312 0.96092 0.97213 0.92684 0.88834 0.89214 0.91393 0.91852 0.90931 0.91064 0.93545 0.89226 0.86719 0.94041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.90 10.24 59.84 0.61 1.51 16 2 N -0.62 -10.19 2.87 -181.57 -0.52 -10.71 16 3 C 0.13 2.56 5.35 -4.04 -0.02 2.54 16 4 C -0.02 -0.56 4.37 -27.88 -0.12 -0.68 16 5 C -0.52 -15.09 9.66 -34.44 -0.33 -15.42 16 6 H 0.07 2.26 7.99 -52.48 -0.42 1.84 16 7 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 8 N -0.90 -28.21 13.96 55.43 0.77 -27.44 16 9 Si 0.88 22.35 27.47 -169.99 -4.67 17.69 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.27 -6.70 6.54 56.52 0.37 -6.33 16 13 C 0.50 8.38 7.41 -10.99 -0.08 8.30 16 14 O -0.53 -11.11 13.57 5.55 0.08 -11.04 16 15 C -0.13 -1.53 3.73 -27.88 -0.10 -1.63 16 16 C -0.11 -1.30 2.03 -90.48 -0.18 -1.49 16 17 H 0.09 1.30 7.95 -51.93 -0.41 0.89 16 18 C -0.12 -1.06 5.31 -26.55 -0.14 -1.20 16 19 C -0.16 -1.36 6.14 -26.59 -0.16 -1.53 16 20 C 0.06 0.56 6.84 37.21 0.25 0.81 16 21 O -0.38 -5.24 10.77 -35.23 -0.38 -5.62 16 22 C 0.06 0.83 5.84 37.21 0.22 1.05 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.07 0.89 8.07 -51.93 -0.42 0.47 16 25 H 0.06 0.59 6.44 -51.93 -0.33 0.26 16 26 H 0.07 1.30 8.07 -51.93 -0.42 0.88 16 27 H 0.08 1.75 7.42 -51.93 -0.39 1.37 16 28 H 0.02 0.55 7.20 -51.93 -0.37 0.18 16 29 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 30 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 31 H 0.09 0.92 7.40 -51.93 -0.38 0.53 16 32 H 0.09 0.81 8.11 -51.93 -0.42 0.39 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.11 1.85 6.04 -51.93 -0.31 1.53 16 40 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 317.49 15.07 4.78 4.78 Total: -1.00 -34.21 317.49 -6.92 -41.14 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -6.82 Total: -3.03 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: -0.16 Total: -5.77 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: 0.25 Total: -38.15 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: -0.30 Total: -16.66 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.67 Total: 17.69 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -34.21 -6.92 -41.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260251842.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.088 kcal (2) G-P(sol) polarization free energy of solvation -34.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds