Wall clock time and date at job start Mon Mar 30 2020 04:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46848 * 111.00171 * 2 1 4 4 C 1.53039 * 109.51997 * 174.16537 * 3 2 1 5 5 C 1.53119 * 109.28129 * 59.18522 * 4 3 2 6 6 C 1.53119 * 109.15731 * 302.34211 * 5 4 3 7 7 H 1.09002 * 109.50244 * 297.71261 * 6 5 4 8 8 C 1.53004 * 109.50311 * 177.63565 * 6 5 4 9 9 H 1.09001 * 109.62158 * 301.13952 * 8 6 5 10 10 O 1.43747 * 109.63233 * 61.52907 * 8 6 5 11 11 C 1.44778 * 104.81518 * 144.19181 * 10 8 6 12 12 C 1.54913 * 101.72227 * 323.90088 * 11 10 8 13 13 H 1.09005 * 110.69461 * 276.98650 * 12 11 10 14 14 C 1.53004 * 110.69653 * 153.95736 * 12 11 10 15 15 C 1.50699 * 109.47130 * 174.99810 * 14 12 11 16 16 H 1.08001 * 120.00107 * 0.02562 * 15 14 12 17 17 C 1.37873 * 119.99747 * 180.02562 * 15 14 12 18 18 N 1.31510 * 120.00480 * 359.97438 * 17 15 14 19 19 Si 1.86811 * 119.99812 * 180.02562 * 17 15 14 20 20 H 1.48488 * 109.47215 * 89.99694 * 19 17 15 21 21 H 1.48498 * 109.46956 * 210.00117 * 19 17 15 22 22 H 1.48505 * 109.46799 * 329.99592 * 19 17 15 23 23 O 1.43366 * 109.63241 * 180.89554 * 8 6 5 24 24 C 1.46855 * 110.99462 * 235.79495 * 2 1 3 25 25 H 1.08995 * 109.47489 * 56.03768 * 1 2 3 26 26 H 1.09000 * 109.47357 * 176.04737 * 1 2 3 27 27 H 1.09004 * 109.46688 * 296.04407 * 1 2 3 28 28 H 1.09001 * 109.45994 * 54.14761 * 3 2 1 29 29 H 1.09004 * 109.45289 * 294.17796 * 3 2 1 30 30 H 1.08998 * 109.50346 * 299.23617 * 4 3 2 31 31 H 1.09009 * 109.53196 * 179.14253 * 4 3 2 32 32 H 1.08999 * 109.52354 * 182.43479 * 5 4 3 33 33 H 1.09004 * 109.57378 * 62.27732 * 5 4 3 34 34 H 1.09006 * 110.97765 * 82.01026 * 11 10 8 35 35 H 1.09004 * 110.97948 * 205.78815 * 11 10 8 36 36 H 1.09001 * 109.47064 * 294.99945 * 14 12 11 37 37 H 1.08998 * 109.46988 * 55.00008 * 14 12 11 38 38 H 0.97000 * 120.00502 * 179.97438 * 18 17 15 39 39 H 1.09003 * 109.46449 * 65.82226 * 24 2 1 40 40 H 1.08992 * 109.46444 * 305.85442 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3340 0.1466 5 6 4.1188 0.5370 -1.0146 6 6 3.5180 -0.8715 -1.0211 7 1 3.7813 -1.3837 -0.0957 8 6 4.0686 -1.6561 -2.2137 9 1 3.8226 -1.1357 -3.1393 10 8 5.4957 -1.7793 -2.0934 11 6 5.7996 -3.0933 -2.6198 12 6 4.5761 -3.9145 -2.1418 13 1 4.7137 -4.2472 -1.1129 14 6 4.3319 -5.1090 -3.0662 15 6 3.2164 -5.9554 -2.5092 16 1 2.7299 -5.6698 -1.5883 17 6 2.8170 -7.0945 -3.1754 18 7 3.4090 -7.4422 -4.2971 19 14 1.4337 -8.1434 -2.4854 20 1 0.1353 -7.6700 -3.0285 21 1 1.6458 -9.5607 -2.8746 22 1 1.4206 -8.0334 -1.0045 23 8 3.4919 -2.9685 -2.2344 24 6 1.9951 -0.7708 -1.1339 25 1 -0.3634 0.5741 -0.8523 26 1 -0.3634 -1.0252 -0.0708 27 1 -0.3633 0.4512 0.9234 28 1 1.5635 1.9257 0.8330 29 1 1.7324 1.8607 -0.9377 30 1 3.7814 0.8566 1.0905 31 1 3.9105 2.3510 0.1314 32 1 5.1997 0.4714 -0.8909 33 1 3.8895 1.0351 -1.9567 34 1 5.8557 -3.0743 -3.7083 35 1 6.7227 -3.4821 -2.1898 36 1 4.0557 -4.7505 -4.0578 37 1 5.2411 -5.7062 -3.1359 38 1 3.1282 -8.2438 -4.7656 39 1 1.7323 -0.2708 -2.0662 40 1 1.5633 -1.7714 -1.1245 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260352655.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:14 Heat of formation + Delta-G solvation = -122.436554 kcal Electronic energy + Delta-G solvation = -19837.712329 eV Core-core repulsion = 16843.925543 eV Total energy + Delta-G solvation = -2993.786787 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.52650 -39.67882 -36.22586 -35.31131 -34.72280 -33.02968 -31.65226 -28.60455 -27.64997 -25.97081 -25.06990 -23.79657 -22.66195 -22.17333 -20.78010 -18.61745 -18.08344 -17.57533 -16.99689 -16.54906 -16.34822 -15.80838 -15.61941 -15.18784 -14.98453 -14.76665 -14.26921 -14.14130 -13.70992 -13.67982 -13.61532 -13.24432 -13.12034 -13.09333 -12.55146 -12.51620 -12.36549 -12.33296 -11.76374 -11.71291 -11.53215 -11.31180 -11.20765 -11.01052 -10.60138 -10.36131 -9.31547 -8.21936 -6.30695 1.39234 1.40267 1.51544 2.40274 2.44872 2.87476 3.12096 3.20849 3.72088 3.78815 3.83857 3.88896 4.04428 4.15547 4.20730 4.32297 4.35771 4.43628 4.50544 4.57777 4.63708 4.66470 4.74148 4.77567 4.82214 4.95552 4.98279 5.00712 5.08476 5.19155 5.30130 5.33532 5.43708 5.54484 5.74522 6.04356 6.15836 6.16315 6.27442 6.80622 7.36942 8.89829 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.023046 B = 0.005555 C = 0.004610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.658855 B = 5039.312897 C = 6072.785797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.557 5.557 3 C 0.052 3.948 4 C -0.111 4.111 5 C -0.106 4.106 6 C -0.087 4.087 7 H 0.069 0.931 8 C 0.230 3.770 9 H 0.078 0.922 10 O -0.384 6.384 11 C 0.026 3.974 12 C 0.065 3.935 13 H 0.070 0.930 14 C 0.029 3.971 15 C -0.532 4.532 16 H 0.052 0.948 17 C 0.005 3.995 18 N -0.930 5.930 19 Si 0.961 3.039 20 H -0.276 1.276 21 H -0.278 1.278 22 H -0.266 1.266 23 O -0.391 6.391 24 C 0.073 3.927 25 H 0.030 0.970 26 H 0.060 0.940 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.036 0.964 30 H 0.064 0.936 31 H 0.092 0.908 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.130 0.870 36 H 0.000 1.000 37 H 0.024 0.976 38 H 0.265 0.735 39 H 0.034 0.966 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.395 17.797 7.312 19.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.282 5.282 3 C -0.075 4.075 4 C -0.148 4.148 5 C -0.144 4.144 6 C -0.106 4.106 7 H 0.087 0.913 8 C 0.135 3.865 9 H 0.095 0.905 10 O -0.304 6.304 11 C -0.050 4.050 12 C 0.008 3.992 13 H 0.088 0.912 14 C -0.008 4.008 15 C -0.570 4.570 16 H 0.070 0.930 17 C -0.193 4.193 18 N -0.571 5.571 19 Si 0.786 3.214 20 H -0.201 1.201 21 H -0.203 1.203 22 H -0.191 1.191 23 O -0.313 6.313 24 C -0.055 4.055 25 H 0.049 0.951 26 H 0.079 0.921 27 H 0.103 0.897 28 H 0.109 0.891 29 H 0.054 0.946 30 H 0.083 0.917 31 H 0.110 0.890 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.147 0.853 36 H 0.019 0.981 37 H 0.043 0.957 38 H 0.073 0.927 39 H 0.052 0.948 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.319 17.564 7.688 19.176 hybrid contribution -0.912 -0.734 -0.911 1.483 sum -1.231 16.830 6.777 18.185 Atomic orbital electron populations 1.22384 0.86179 1.01986 1.01672 1.61876 1.08679 1.14699 1.42952 1.22223 0.95933 0.88207 1.01157 1.21571 0.94129 1.00909 0.98210 1.21498 1.00470 0.92902 0.99538 1.21470 0.94960 0.97031 0.97134 0.91274 1.24156 0.78560 0.85803 0.98025 0.90487 1.89087 1.21953 1.34994 1.84408 1.24536 0.99652 0.80746 1.00036 1.23836 0.84771 0.90581 0.99965 0.91219 1.19094 0.96662 0.91268 0.93759 1.21455 1.18595 1.08311 1.08656 0.93006 1.25850 0.99299 0.98970 0.95214 1.70052 1.43373 1.26125 1.17532 0.85507 0.79160 0.77792 0.78968 1.20149 1.20289 1.19055 1.88956 1.31988 1.15179 1.95149 1.21801 0.93997 0.98003 0.91671 0.95112 0.92139 0.89661 0.89142 0.94599 0.91702 0.88973 0.91084 0.91624 0.90559 0.85263 0.98121 0.95736 0.92652 0.94796 0.92093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 9.62 127.69 1.23 1.76 16 2 N -0.56 -13.84 4.91 -922.57 -4.53 -18.37 16 3 C 0.05 1.01 5.46 86.33 0.47 1.48 16 4 C -0.11 -2.08 6.09 30.65 0.19 -1.89 16 5 C -0.11 -2.45 5.12 30.67 0.16 -2.29 16 6 C -0.09 -2.57 2.37 -10.74 -0.03 -2.59 16 7 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 8 C 0.23 7.92 3.50 71.98 0.25 8.17 16 9 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 10 O -0.38 -12.91 10.80 -126.22 -1.36 -14.27 16 11 C 0.03 0.89 7.40 72.64 0.54 1.43 16 12 C 0.07 2.80 3.58 31.25 0.11 2.92 16 13 H 0.07 3.00 8.14 -2.38 -0.02 2.98 16 14 C 0.03 1.53 4.73 29.85 0.14 1.67 16 15 C -0.53 -30.83 9.04 25.60 0.23 -30.60 16 16 H 0.05 3.00 7.74 -2.91 -0.02 2.98 16 17 C 0.00 0.26 5.46 84.65 0.46 0.73 16 18 N -0.93 -56.18 13.29 21.45 0.28 -55.89 16 19 Si 0.96 45.08 29.54 68.60 2.03 47.11 16 20 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 21 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 22 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 23 O -0.39 -16.95 10.17 -126.22 -1.28 -18.24 16 24 C 0.07 2.15 4.58 86.32 0.40 2.54 16 25 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.06 1.37 8.02 -2.39 -0.02 1.36 16 27 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 28 H 0.09 1.43 8.12 -2.39 -0.02 1.41 16 29 H 0.04 0.67 8.14 -2.38 -0.02 0.65 16 30 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.09 1.28 8.14 -2.38 -0.02 1.27 16 32 H 0.07 1.67 7.81 -2.39 -0.02 1.65 16 33 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 34 H 0.08 2.55 8.04 -2.38 -0.02 2.53 16 35 H 0.13 3.66 8.14 -2.38 -0.02 3.64 16 36 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 37 H 0.02 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 39 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.06 2.11 7.59 -2.39 -0.02 2.09 16 Total: -1.00 -65.28 318.48 0.26 -65.02 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: 0.98 Total: 11.33 kcal Atomic # 6 Polarization: -20.83 SS G_CDS: 4.15 Total: -16.68 kcal Atomic # 7 Polarization: -70.02 SS G_CDS: -4.25 Total: -74.26 kcal Atomic # 8 Polarization: -29.86 SS G_CDS: -2.65 Total: -32.51 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -65.28 0.26 -65.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260352655.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.419 kcal (2) G-P(sol) polarization free energy of solvation -65.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds