Wall clock time and date at job start Mon Mar 30 2020 04:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42904 * 113.99834 * 2 1 4 4 C 1.50700 * 109.46799 * 179.97438 * 3 2 1 5 5 C 1.29822 * 118.55823 * 359.97438 * 4 3 2 6 6 C 1.50143 * 123.28780 * 180.39618 * 5 4 3 7 7 N 1.46848 * 110.27184 * 342.92604 * 6 5 4 8 8 C 1.46905 * 110.99586 * 174.31452 * 7 6 5 9 9 C 1.52997 * 109.47150 * 66.04973 * 8 7 6 10 10 O 1.42898 * 109.47319 * 64.99949 * 9 8 7 11 11 C 1.42902 * 114.00186 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.47205 * 179.97438 * 11 10 9 13 13 H 1.08008 * 120.00105 * 359.97438 * 12 11 10 14 14 C 1.37873 * 120.00129 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99722 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00218 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.46964 * 89.99643 * 16 14 12 18 18 H 1.48499 * 109.47045 * 209.99599 * 16 14 12 19 19 H 1.48495 * 109.46904 * 329.99888 * 16 14 12 20 20 C 1.47240 * 110.20343 * 50.92717 * 7 6 5 21 21 C 1.50312 * 118.55314 * 180.02562 * 4 3 2 22 22 H 1.08993 * 109.47571 * 300.00296 * 1 2 3 23 23 H 1.09000 * 109.47298 * 60.00338 * 1 2 3 24 24 H 1.09000 * 109.47182 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47164 * 59.99867 * 3 2 1 26 26 H 1.08999 * 109.46799 * 299.99557 * 3 2 1 27 27 H 1.07997 * 118.35464 * 0.37661 * 5 4 3 28 28 H 1.09000 * 109.33843 * 222.68671 * 6 5 4 29 29 H 1.08996 * 109.33656 * 103.17160 * 6 5 4 30 30 H 1.09001 * 109.47063 * 306.04369 * 8 7 6 31 31 H 1.09004 * 109.46681 * 186.04994 * 8 7 6 32 32 H 1.09002 * 109.47153 * 304.99641 * 9 8 7 33 33 H 1.09001 * 109.46832 * 184.99832 * 9 8 7 34 34 H 1.09001 * 109.46918 * 299.99649 * 11 10 9 35 35 H 1.08999 * 109.46857 * 59.99535 * 11 10 9 36 36 H 0.96998 * 119.99585 * 180.02562 * 15 14 12 37 37 H 1.09002 * 109.63402 * 50.89036 * 20 7 6 38 38 H 1.09005 * 109.63498 * 171.49806 * 20 7 6 39 39 H 1.09001 * 109.43236 * 283.57889 * 21 4 3 40 40 H 1.09004 * 109.42725 * 43.42795 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5124 1.1865 0.0006 5 6 4.0410 0.0008 0.0016 6 6 5.5229 -0.2409 0.0110 7 7 6.2396 0.9778 -0.3860 8 6 7.6919 0.8013 -0.2530 9 6 8.1724 -0.2474 -1.2581 10 8 7.9709 0.2387 -2.5867 11 6 8.3884 -0.6698 -3.6076 12 6 8.1304 -0.0582 -4.9605 13 1 7.6911 0.9258 -5.0335 14 6 8.4541 -0.7551 -6.1052 15 7 8.9885 -1.9535 -6.0164 16 14 8.1336 0.0027 -7.7823 17 1 9.3270 0.7747 -8.2128 18 1 7.8585 -1.0738 -8.7675 19 1 6.9607 0.9097 -7.6996 20 6 5.7723 2.1248 0.4102 21 6 4.3329 2.4459 0.0013 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.6885 1.8464 0.8899 26 1 1.6885 1.8463 -0.8900 27 1 3.3819 -0.8547 -0.0044 28 1 5.7621 -1.0436 -0.6865 29 1 5.8347 -0.5324 1.0138 30 1 7.9264 0.4694 0.7585 31 1 8.1926 1.7493 -0.4495 32 1 7.6080 -1.1694 -1.1190 33 1 9.2330 -0.4431 -1.0998 34 1 9.4533 -0.8748 -3.4983 35 1 7.8281 -1.6004 -3.5171 36 1 9.2166 -2.4437 -6.8218 37 1 5.8033 1.8719 1.4700 38 1 6.4093 2.9881 0.2178 39 1 4.3291 2.8817 -0.9977 40 1 3.9050 3.1570 0.7080 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294378849.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:52 Heat of formation + Delta-G solvation = -72.696289 kcal Electronic energy + Delta-G solvation = -18966.640647 eV Core-core repulsion = 15975.010760 eV Total energy + Delta-G solvation = -2991.629887 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.31727 -37.88992 -36.44259 -33.99604 -32.56562 -30.81272 -29.56306 -27.56368 -26.59324 -25.51964 -23.89076 -22.39099 -22.16400 -20.87381 -17.54569 -16.64166 -16.41729 -16.24072 -16.03349 -15.38918 -15.32187 -14.57184 -14.44508 -14.23462 -13.90380 -13.39964 -13.04120 -12.93158 -12.66024 -12.30240 -12.19699 -11.88586 -11.57857 -11.50323 -11.14397 -10.94698 -10.76946 -10.69314 -10.33393 -10.25717 -9.97418 -9.88770 -9.00218 -8.71899 -8.66232 -8.07125 -7.98030 -6.02957 -4.03477 2.33360 3.35796 3.40338 3.46833 3.56966 4.08632 4.42466 4.72866 4.88551 5.01376 5.06657 5.10927 5.22058 5.29443 5.33575 5.37543 5.41758 5.44065 5.50289 5.53592 5.63021 5.71344 5.74292 5.93671 6.01295 6.10420 6.14913 6.24423 6.37152 6.63212 6.80767 7.18960 7.20705 7.30248 7.38814 7.53121 7.89207 8.25951 8.71566 9.11583 9.61102 11.08861 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.018744 B = 0.004476 C = 0.003953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.480380 B = 6253.503079 C = 7081.726612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.388 6.388 3 C 0.100 3.900 4 C -0.139 4.139 5 C -0.126 4.126 6 C 0.080 3.920 7 N -0.518 5.518 8 C 0.060 3.940 9 C 0.066 3.934 10 O -0.379 6.379 11 C 0.194 3.806 12 C -0.509 4.509 13 H 0.066 0.934 14 C 0.055 3.945 15 N -0.901 5.901 16 Si 0.907 3.093 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.271 1.271 20 C 0.055 3.945 21 C -0.071 4.071 22 H 0.039 0.961 23 H 0.041 0.959 24 H 0.085 0.915 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.123 0.877 28 H 0.091 0.909 29 H 0.040 0.960 30 H 0.038 0.962 31 H 0.082 0.918 32 H 0.036 0.964 33 H 0.039 0.961 34 H 0.002 0.998 35 H 0.003 0.997 36 H 0.263 0.737 37 H 0.031 0.969 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.285 6.078 16.036 21.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.307 6.307 3 C 0.024 3.976 4 C -0.140 4.140 5 C -0.144 4.144 6 C -0.047 4.047 7 N -0.243 5.243 8 C -0.067 4.067 9 C -0.012 4.012 10 O -0.299 6.299 11 C 0.120 3.880 12 C -0.547 4.547 13 H 0.085 0.915 14 C -0.146 4.146 15 N -0.541 5.541 16 Si 0.734 3.266 17 H -0.205 1.205 18 H -0.212 1.212 19 H -0.196 1.196 20 C -0.073 4.073 21 C -0.109 4.109 22 H 0.057 0.943 23 H 0.060 0.940 24 H 0.104 0.896 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.140 0.860 28 H 0.110 0.890 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.100 0.900 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.019 0.981 35 H 0.021 0.979 36 H 0.072 0.928 37 H 0.049 0.951 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.292 6.036 15.373 20.588 hybrid contribution -0.061 -0.057 -0.075 0.112 sum -12.353 5.979 15.298 20.552 Atomic orbital electron populations 1.22722 0.81084 1.02768 0.99849 1.87862 1.19520 1.27891 1.95437 1.21295 0.91750 0.84491 1.00083 1.20710 0.92986 0.95780 1.04505 1.22096 0.95551 0.97978 0.98801 1.21064 0.91292 0.93664 0.98728 1.62317 1.04183 1.03435 1.54338 1.22185 0.87628 1.00784 0.96145 1.22246 0.97648 0.95300 0.86018 1.87949 1.85079 1.44622 1.12231 1.20169 0.93573 0.88812 0.85482 1.21074 1.40806 1.03445 0.89394 0.91540 1.24942 0.95245 0.94892 0.99493 1.69971 1.43106 1.11923 1.29069 0.86354 0.78739 0.78713 0.82794 1.20540 1.21156 1.19619 1.22133 0.95899 0.94666 0.94619 1.20337 0.93423 0.94661 1.02457 0.94252 0.94008 0.89623 0.92774 0.92370 0.85965 0.89044 0.94203 0.94403 0.90005 0.94602 0.94344 0.98061 0.97938 0.92787 0.95080 0.90314 0.89893 0.91277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.39 16 2 O -0.39 -4.75 8.88 -35.23 -0.31 -5.06 16 3 C 0.10 1.12 6.28 36.01 0.23 1.35 16 4 C -0.14 -1.84 5.90 -100.92 -0.59 -2.44 16 5 C -0.13 -1.83 9.33 -35.96 -0.34 -2.17 16 6 C 0.08 1.20 5.27 -5.27 -0.03 1.18 16 7 N -0.52 -8.34 4.67 -236.13 -1.10 -9.45 16 8 C 0.06 0.95 5.33 -3.82 -0.02 0.93 16 9 C 0.07 1.28 5.99 37.16 0.22 1.50 16 10 O -0.38 -9.59 10.27 -35.23 -0.36 -9.95 16 11 C 0.19 5.53 5.69 36.00 0.20 5.74 16 12 C -0.51 -15.52 9.43 -34.44 -0.32 -15.85 16 13 H 0.07 2.03 7.81 -52.48 -0.41 1.62 16 14 C 0.05 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -27.65 13.29 55.43 0.74 -26.92 16 16 Si 0.91 22.46 29.54 -169.99 -5.02 17.43 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 19 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 20 C 0.05 0.70 5.59 -3.62 -0.02 0.68 16 21 C -0.07 -0.86 6.05 -28.05 -0.17 -1.03 16 22 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 23 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 24 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.12 1.78 6.54 -52.49 -0.34 1.43 16 28 H 0.09 1.53 6.62 -51.93 -0.34 1.18 16 29 H 0.04 0.54 8.06 -51.93 -0.42 0.12 16 30 H 0.04 0.50 8.06 -51.93 -0.42 0.08 16 31 H 0.08 1.27 7.94 -51.93 -0.41 0.85 16 32 H 0.04 0.68 6.45 -51.93 -0.33 0.35 16 33 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.00 0.05 8.14 -51.93 -0.42 -0.38 16 35 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 36 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 37 H 0.03 0.37 8.08 -51.93 -0.42 -0.05 16 38 H 0.08 0.94 7.92 -51.93 -0.41 0.53 16 39 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 326.50 15.07 4.92 4.92 Total: -1.00 -33.49 326.50 -7.84 -41.34 By element: Atomic # 1 Polarization: 1.74 SS G_CDS: -6.87 Total: -5.13 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: 0.18 Total: -7.19 kcal Atomic # 7 Polarization: -36.00 SS G_CDS: -0.37 Total: -36.36 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: -0.67 Total: -15.01 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.49 -7.84 -41.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294378849.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.361 kcal (2) G-P(sol) polarization free energy of solvation -33.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds