Wall clock time and date at job start Mon Mar 30 2020 05:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.53272 * 2 1 4 4 C 1.53040 * 109.50061 * 239.90689 * 2 1 3 5 5 N 1.46846 * 109.51964 * 299.23592 * 4 2 1 6 6 C 1.46902 * 110.99617 * 174.15808 * 5 4 2 7 7 C 1.50705 * 109.47245 * 190.25426 * 6 5 4 8 8 O 1.21299 * 119.99826 * 0.02562 * 7 6 5 9 9 N 1.34771 * 120.00066 * 180.02562 * 7 6 5 10 10 C 1.37108 * 119.99856 * 180.02562 * 9 7 6 11 11 H 1.07998 * 119.99785 * 0.02562 * 10 9 7 12 12 C 1.38944 * 119.99846 * 179.97438 * 10 9 7 13 13 N 1.31408 * 120.00324 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99944 * 180.02562 * 12 10 9 15 15 H 1.48505 * 109.46803 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.47133 * 119.99806 * 14 12 10 17 17 H 1.48496 * 109.47345 * 240.00073 * 14 12 10 18 18 C 1.46846 * 111.19997 * 298.25655 * 5 4 2 19 19 C 1.53032 * 109.52260 * 61.74591 * 18 5 4 20 20 C 1.53119 * 109.50523 * 120.10117 * 2 1 3 21 21 H 1.09003 * 109.56984 * 182.22044 * 20 2 1 22 22 N 1.46890 * 109.52218 * 302.37981 * 20 2 1 23 23 H 1.09006 * 109.46961 * 299.89732 * 1 2 3 24 24 H 1.08992 * 109.47593 * 59.89295 * 1 2 3 25 25 H 1.08995 * 109.47152 * 179.90131 * 1 2 3 26 26 H 1.09002 * 109.47020 * 180.10205 * 3 2 1 27 27 H 1.08994 * 109.47803 * 300.09888 * 3 2 1 28 28 H 1.09005 * 109.47281 * 60.10698 * 3 2 1 29 29 H 1.08996 * 109.46572 * 179.22054 * 4 2 1 30 30 H 1.09004 * 109.46207 * 59.25135 * 4 2 1 31 31 H 1.09001 * 109.47344 * 310.25636 * 6 5 4 32 32 H 1.09004 * 109.47104 * 70.25845 * 6 5 4 33 33 H 0.96999 * 120.00634 * 359.97438 * 9 7 6 34 34 H 0.96999 * 120.00361 * 180.02562 * 13 12 10 35 35 H 1.09001 * 109.45990 * 181.76055 * 18 5 4 36 36 H 1.08999 * 109.46398 * 301.73978 * 18 5 4 37 37 H 1.08999 * 109.50710 * 60.75864 * 19 18 5 38 38 H 1.08996 * 109.50945 * 180.88041 * 19 18 5 39 39 H 1.00902 * 111.00010 * 179.68527 * 22 20 2 40 40 H 1.00904 * 111.00398 * 303.63535 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0416 1.4419 0.0000 4 6 2.0409 -0.7233 -1.2482 5 7 1.5675 -2.1134 -1.2380 6 6 1.9221 -2.7993 -2.4877 7 6 1.2120 -4.1271 -2.5509 8 8 0.4819 -4.4681 -1.6443 9 7 1.3882 -4.9355 -3.6147 10 6 0.7417 -6.1433 -3.6724 11 1 0.0910 -6.4465 -2.8656 12 6 0.9230 -6.9765 -4.7694 13 7 1.7143 -6.6073 -5.7514 14 14 0.0416 -8.6216 -4.8484 15 1 -0.7846 -8.7996 -3.6274 16 1 -0.8339 -8.6571 -6.0474 17 1 1.0421 -9.7157 -4.9335 18 6 2.0846 -2.8420 -0.0726 19 6 1.5751 -2.1819 1.2106 20 6 2.0413 -0.7239 1.2487 21 1 3.1306 -0.6902 1.2699 22 7 1.5063 -0.0686 2.4495 23 1 -0.3633 0.5123 0.8910 24 1 -0.3634 0.5154 -0.8889 25 1 -0.3633 -1.0276 -0.0018 26 1 3.1316 1.4408 -0.0018 27 1 1.6774 1.9568 -0.8890 28 1 1.6804 1.9557 0.8910 29 1 3.1308 -0.7109 -1.2546 30 1 1.6668 -0.2187 -2.1390 31 1 1.6215 -2.1857 -3.3369 32 1 2.9995 -2.9617 -2.5199 33 1 1.9717 -4.6627 -4.3399 34 1 1.8405 -7.1888 -6.5174 35 1 1.7423 -3.8761 -0.1097 36 1 3.1743 -2.8194 -0.0844 37 1 0.4858 -2.2162 1.2297 38 1 1.9717 -2.7134 2.0756 39 1 1.8259 -0.5318 3.2870 40 1 1.7467 0.9113 2.4643 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000304258108.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:56 Heat of formation + Delta-G solvation = -61.444315 kcal Electronic energy + Delta-G solvation = -19860.620710 eV Core-core repulsion = 16901.771496 eV Total energy + Delta-G solvation = -2958.849214 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.169 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.08019 -39.76649 -36.52766 -35.69787 -33.87898 -33.27364 -31.54385 -28.76298 -27.99386 -27.07288 -25.98800 -23.45079 -22.64612 -20.94550 -19.85325 -19.18493 -17.77967 -16.85540 -16.75457 -16.48915 -16.37891 -15.86774 -15.54950 -15.44266 -15.16541 -14.57243 -14.09535 -14.01360 -13.81514 -13.48588 -13.29248 -12.92999 -12.83259 -12.61612 -12.46661 -12.40127 -12.30161 -12.11333 -12.07393 -11.66794 -11.49397 -11.26381 -11.04988 -10.22306 -9.98413 -9.49971 -9.11930 -8.45752 -5.94203 1.36635 1.41591 1.55895 2.06997 2.29011 2.78128 3.21107 3.39006 3.58496 3.73621 3.84738 4.06243 4.25658 4.30029 4.37315 4.44227 4.49092 4.52737 4.60742 4.69116 4.77695 4.81970 4.93152 4.94499 5.11844 5.18365 5.20474 5.31173 5.41421 5.42953 5.46037 5.72681 5.93389 6.13416 6.29350 6.33068 6.62369 6.70101 7.14537 7.58104 8.14396 8.72077 Molecular weight = 255.17amu Principal moments of inertia in cm(-1) A = 0.046146 B = 0.004407 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.626433 B = 6351.930516 C = 6615.887775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.052 4.052 3 C -0.137 4.137 4 C 0.063 3.937 5 N -0.527 5.527 6 C 0.057 3.943 7 C 0.442 3.558 8 O -0.612 6.612 9 N -0.576 5.576 10 C -0.330 4.330 11 H 0.078 0.922 12 C -0.013 4.013 13 N -0.922 5.922 14 Si 0.992 3.008 15 H -0.274 1.274 16 H -0.271 1.271 17 H -0.270 1.270 18 C 0.058 3.942 19 C -0.101 4.101 20 C 0.109 3.891 21 H 0.035 0.965 22 N -0.844 5.844 23 H 0.062 0.938 24 H 0.043 0.957 25 H 0.037 0.963 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.039 0.961 30 H 0.082 0.918 31 H 0.108 0.892 32 H 0.064 0.936 33 H 0.395 0.605 34 H 0.277 0.723 35 H 0.060 0.940 36 H 0.029 0.971 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.346 0.654 40 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.899 15.307 9.966 18.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.053 4.053 3 C -0.195 4.195 4 C -0.065 4.065 5 N -0.252 5.252 6 C -0.074 4.074 7 C 0.230 3.770 8 O -0.498 6.498 9 N -0.214 5.214 10 C -0.460 4.460 11 H 0.096 0.904 12 C -0.212 4.212 13 N -0.563 5.563 14 Si 0.816 3.184 15 H -0.199 1.199 16 H -0.196 1.196 17 H -0.196 1.196 18 C -0.071 4.071 19 C -0.139 4.139 20 C -0.003 4.003 21 H 0.053 0.947 22 N -0.377 5.377 23 H 0.081 0.919 24 H 0.062 0.938 25 H 0.056 0.944 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.057 0.943 30 H 0.101 0.899 31 H 0.126 0.874 32 H 0.082 0.918 33 H 0.229 0.771 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.047 0.953 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.160 0.840 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 3.246 14.804 10.152 18.242 hybrid contribution 1.701 -0.905 -0.553 2.004 sum 4.947 13.899 9.599 17.601 Atomic orbital electron populations 1.21565 0.94086 1.01062 1.00686 1.20564 0.96623 0.95385 0.92688 1.21825 1.00888 0.93786 1.02965 1.22297 0.97413 0.87445 0.99297 1.61429 1.60758 1.02202 1.00781 1.21718 0.98033 0.93008 0.94624 1.20772 0.85616 0.87442 0.83185 1.90469 1.42905 1.76757 1.39674 1.41947 1.42937 1.17002 1.19490 1.19685 1.25482 0.95183 1.05654 0.90419 1.26013 0.97752 1.02969 0.94506 1.69677 1.37895 1.39528 1.09226 0.84885 0.78055 0.77236 0.78237 1.19875 1.19605 1.19570 1.22085 0.95833 0.98609 0.90539 1.21512 1.01531 0.95246 0.95619 1.21231 0.95294 0.92922 0.90841 0.94671 1.58639 1.67753 1.07477 1.03823 0.91895 0.93777 0.94357 0.92205 0.91813 0.91045 0.94277 0.89938 0.87357 0.91819 0.77093 0.91352 0.92145 0.95318 0.92212 0.91336 0.84049 0.83605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.01 7.85 71.98 0.57 -2.44 16 2 C -0.05 -1.13 0.59 -52.13 -0.03 -1.16 16 3 C -0.14 -2.12 8.21 71.98 0.59 -1.53 16 4 C 0.06 1.59 4.18 86.33 0.36 1.95 16 5 N -0.53 -17.75 3.67 -900.92 -3.31 -21.05 16 6 C 0.06 2.07 5.45 85.56 0.47 2.54 16 7 C 0.44 21.64 7.46 87.66 0.65 22.29 16 8 O -0.61 -34.57 13.92 -3.09 -0.04 -34.61 16 9 N -0.58 -30.22 5.29 -306.98 -1.62 -31.84 16 10 C -0.33 -19.10 9.68 84.04 0.81 -18.29 16 11 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 12 C -0.01 -0.70 5.50 84.93 0.47 -0.24 16 13 N -0.92 -50.40 13.05 21.66 0.28 -50.11 16 14 Si 0.99 43.60 29.55 68.60 2.03 45.62 16 15 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 16 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 17 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 18 C 0.06 1.96 5.11 86.32 0.44 2.40 16 19 C -0.10 -2.86 5.32 30.65 0.16 -2.70 16 20 C 0.11 2.35 2.50 45.00 0.11 2.47 16 21 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 22 N -0.84 -14.77 8.38 -168.35 -1.41 -16.18 16 23 H 0.06 1.51 7.55 -2.38 -0.02 1.49 16 24 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.04 1.26 6.01 -2.39 -0.01 1.24 16 26 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.07 0.94 6.64 -2.38 -0.02 0.93 16 29 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.08 1.95 8.01 -2.38 -0.02 1.93 16 31 H 0.11 3.46 7.98 -2.39 -0.02 3.44 16 32 H 0.06 2.08 8.12 -2.39 -0.02 2.06 16 33 H 0.40 19.70 7.90 -92.71 -0.73 18.96 16 34 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 35 H 0.06 2.59 5.80 -2.39 -0.01 2.58 16 36 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.06 2.00 6.58 -2.39 -0.02 1.99 16 38 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.35 5.17 9.04 -89.69 -0.81 4.36 16 40 H 0.35 4.72 7.16 -89.69 -0.64 4.08 16 Total: -1.00 -66.92 310.28 -0.60 -67.52 By element: Atomic # 1 Polarization: 36.48 SS G_CDS: -1.13 Total: 35.35 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: 4.60 Total: 5.30 kcal Atomic # 7 Polarization: -113.13 SS G_CDS: -6.06 Total: -119.19 kcal Atomic # 8 Polarization: -34.57 SS G_CDS: -0.04 Total: -34.61 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Total: -66.92 -0.60 -67.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304258108.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.078 kcal (2) G-P(sol) polarization free energy of solvation -66.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds