Wall clock time and date at job start Mon Mar 30 2020 05:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 110.27419 * 2 1 4 4 N 1.46897 * 109.47408 * 302.09069 * 3 2 1 5 5 C 1.54602 * 110.38847 * 237.85830 * 2 1 3 6 6 C 1.54939 * 102.92047 * 262.99548 * 5 2 1 7 7 N 1.48522 * 103.22860 * 322.58750 * 6 5 2 8 8 C 1.46902 * 110.99952 * 159.71915 * 7 6 5 9 9 C 1.50698 * 109.47215 * 52.60581 * 8 7 6 10 10 O 1.21280 * 119.99901 * 359.97438 * 9 8 7 11 11 N 1.34774 * 120.00338 * 179.97438 * 9 8 7 12 12 C 1.46497 * 120.00288 * 179.97438 * 11 9 8 13 13 C 1.50694 * 109.47115 * 180.02562 * 12 11 9 14 14 H 1.08000 * 120.00563 * 0.02562 * 13 12 11 15 15 C 1.37885 * 119.99902 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99854 * 179.72538 * 15 13 12 18 18 H 1.48504 * 109.47032 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.46816 * 120.00323 * 17 15 13 20 20 H 1.48495 * 109.46630 * 240.00111 * 17 15 13 21 21 C 1.47903 * 105.82094 * 39.20587 * 7 6 5 22 22 H 1.09003 * 109.46698 * 297.90837 * 1 2 3 23 23 H 1.08998 * 109.47234 * 57.90301 * 1 2 3 24 24 H 1.08996 * 109.47012 * 177.90661 * 1 2 3 25 25 H 1.08997 * 109.46805 * 62.09620 * 3 2 1 26 26 H 1.09002 * 109.46914 * 182.09047 * 3 2 1 27 27 H 1.00902 * 110.99747 * 179.97438 * 4 3 2 28 28 H 1.00896 * 111.00118 * 303.95885 * 4 3 2 29 29 H 1.09005 * 110.72733 * 21.35724 * 5 2 1 30 30 H 1.09000 * 110.72124 * 144.63949 * 5 2 1 31 31 H 1.08999 * 110.66764 * 204.14726 * 6 5 2 32 32 H 1.09003 * 110.66382 * 81.02365 * 6 5 2 33 33 H 1.09000 * 109.46932 * 292.60309 * 8 7 6 34 34 H 1.09002 * 109.46978 * 172.60247 * 8 7 6 35 35 H 0.97001 * 119.99493 * 0.02562 * 11 9 8 36 36 H 1.08998 * 109.46734 * 60.00204 * 12 11 9 37 37 H 1.09002 * 109.47081 * 299.99975 * 12 11 9 38 38 H 0.97001 * 119.99646 * 180.02562 * 16 15 13 39 39 H 1.09002 * 109.91743 * 94.02442 * 21 7 6 40 40 H 1.09006 * 109.91853 * 215.11857 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0602 1.4352 0.0000 4 7 1.5397 2.1495 -1.1733 5 6 2.0686 -0.7710 -1.2271 6 6 2.3619 -2.1788 -0.6503 7 7 2.8829 -1.8871 0.7097 8 6 2.7697 -3.0647 1.5805 9 6 3.4095 -4.2512 0.9068 10 8 3.9101 -4.1280 -0.1910 11 7 3.4255 -5.4491 1.5241 12 6 4.0470 -6.6026 0.8688 13 6 3.9309 -7.8106 1.7622 14 1 3.4427 -7.7276 2.7220 15 6 4.4472 -9.0222 1.3539 16 7 5.0413 -9.1234 0.1850 17 14 4.3101 -10.5178 2.4647 18 1 3.6086 -10.1409 3.7182 19 1 3.5427 -11.5821 1.7693 20 1 5.6696 -11.0194 2.7893 21 6 2.0645 -0.7673 1.2234 22 1 -0.3633 0.4810 0.9082 23 1 -0.3633 0.5460 -0.8706 24 1 -0.3633 -1.0269 -0.0375 25 1 1.7349 1.9426 0.9082 26 1 3.1495 1.4201 -0.0375 27 1 1.8755 3.1008 -1.1958 28 1 1.7732 1.6630 -2.0258 29 1 1.3130 -0.8250 -2.0109 30 1 2.9823 -0.3096 -1.6018 31 1 3.1151 -2.6907 -1.2492 32 1 1.4475 -2.7694 -0.5935 33 1 1.7174 -3.2775 1.7688 34 1 3.2753 -2.8675 2.5259 35 1 3.0248 -5.5477 2.4019 36 1 5.0991 -6.3897 0.6798 37 1 3.5407 -6.8001 -0.0761 38 1 5.4041 -9.9759 -0.1024 39 1 1.2325 -1.1547 1.8114 40 1 2.6791 -0.1098 1.8383 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309189016.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:47 Heat of formation + Delta-G solvation = -38.315576 kcal Electronic energy + Delta-G solvation = -19178.056405 eV Core-core repulsion = 16220.210129 eV Total energy + Delta-G solvation = -2957.846276 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.169 amu Computer time = 2.40 seconds Orbital eigenvalues (eV) -39.97384 -38.41033 -35.24096 -34.11664 -32.38162 -31.89506 -29.74446 -28.19129 -26.81104 -25.53704 -23.77022 -22.53114 -21.17503 -19.75187 -19.00414 -17.05475 -16.26304 -15.91066 -15.72360 -15.21905 -15.02063 -14.74737 -14.50586 -13.97388 -13.89280 -13.50204 -13.03418 -12.81361 -12.36166 -12.17667 -12.08638 -11.95563 -11.78606 -11.46949 -11.22384 -10.98097 -10.90739 -10.85071 -10.66294 -10.46537 -10.26260 -9.38454 -8.90588 -8.89629 -8.74353 -8.25482 -7.86279 -6.17570 -4.24371 3.22785 3.29825 3.32888 3.37027 3.80406 4.22849 4.28932 4.43015 4.55960 4.59181 4.92722 5.17483 5.18623 5.29097 5.33686 5.37457 5.48234 5.52123 5.55748 5.60792 5.63609 5.78835 5.82291 5.94961 6.10212 6.14218 6.25444 6.46465 6.87163 7.00217 7.04798 7.18404 7.32127 7.45905 7.51479 7.67052 7.96408 8.62604 8.78200 9.11553 9.42457 10.92681 Molecular weight = 255.17amu Principal moments of inertia in cm(-1) A = 0.060729 B = 0.003491 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.951059 B = 8019.609446 C = 8192.180601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.071 4.071 3 C 0.077 3.923 4 N -0.850 5.850 5 C -0.117 4.117 6 C 0.034 3.966 7 N -0.498 5.498 8 C 0.026 3.974 9 C 0.498 3.502 10 O -0.542 6.542 11 N -0.713 5.713 12 C 0.251 3.749 13 C -0.543 4.543 14 H 0.063 0.937 15 C 0.063 3.937 16 N -0.885 5.885 17 Si 0.904 3.096 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.282 1.282 21 C 0.042 3.958 22 H 0.051 0.949 23 H 0.068 0.932 24 H 0.047 0.953 25 H 0.069 0.931 26 H 0.032 0.968 27 H 0.339 0.661 28 H 0.341 0.659 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.115 0.885 32 H 0.036 0.964 33 H 0.058 0.942 34 H 0.099 0.901 35 H 0.390 0.610 36 H 0.027 0.973 37 H 0.026 0.974 38 H 0.265 0.735 39 H 0.046 0.954 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.102 18.936 1.457 20.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.072 4.072 3 C -0.054 4.054 4 N -0.379 5.379 5 C -0.155 4.155 6 C -0.093 4.093 7 N -0.223 5.223 8 C -0.106 4.106 9 C 0.282 3.718 10 O -0.421 6.421 11 N -0.362 5.362 12 C 0.130 3.870 13 C -0.581 4.581 14 H 0.081 0.919 15 C -0.141 4.141 16 N -0.523 5.523 17 Si 0.731 3.269 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.208 1.208 21 C -0.087 4.087 22 H 0.070 0.930 23 H 0.087 0.913 24 H 0.066 0.934 25 H 0.087 0.913 26 H 0.050 0.950 27 H 0.151 0.849 28 H 0.154 0.846 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.133 0.867 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.117 0.883 35 H 0.222 0.778 36 H 0.045 0.955 37 H 0.044 0.956 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.791 18.851 0.862 20.416 hybrid contribution -0.057 -1.145 0.903 1.459 sum -7.848 17.706 1.764 19.447 Atomic orbital electron populations 1.21762 0.93447 1.00971 1.02396 1.21437 0.96176 0.94225 0.95357 1.21815 0.96475 0.93274 0.93828 1.58722 1.67441 1.06216 1.05559 1.22662 1.00475 0.95791 0.96574 1.23494 0.99436 0.95798 0.90530 1.64655 1.50622 1.04607 1.02384 1.22269 0.99958 0.90587 0.97791 1.20283 0.80871 0.84171 0.86429 1.90582 1.46669 1.84345 1.20475 1.46445 1.58403 1.09945 1.21422 1.19091 0.93507 0.81008 0.93382 1.21267 1.39134 0.93864 1.03851 0.91871 1.24962 0.94737 0.99056 0.95308 1.69987 1.37097 1.25798 1.19389 0.86360 0.77907 0.82227 0.80414 1.19635 1.20805 1.20771 1.23033 0.95619 0.93653 0.96352 0.93029 0.91255 0.93403 0.91260 0.94979 0.84939 0.84643 0.91039 0.91255 0.86725 0.94514 0.92390 0.88298 0.77779 0.95508 0.95623 0.92499 0.93536 0.90465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.25 8.06 37.16 0.30 -0.95 16 2 C -0.07 -0.73 0.76 -153.15 -0.12 -0.84 16 3 C 0.08 0.69 5.43 -3.83 -0.02 0.67 16 4 N -0.85 -6.66 8.79 -10.37 -0.09 -6.75 16 5 C -0.12 -1.35 5.23 -24.87 -0.13 -1.48 16 6 C 0.03 0.52 5.30 -1.90 -0.01 0.51 16 7 N -0.50 -7.33 5.26 -231.90 -1.22 -8.55 16 8 C 0.03 0.38 5.52 -4.98 -0.03 0.35 16 9 C 0.50 9.96 7.54 -10.99 -0.08 9.88 16 10 O -0.54 -12.83 13.52 5.56 0.08 -12.75 16 11 N -0.71 -15.03 5.55 -61.48 -0.34 -15.37 16 12 C 0.25 6.66 5.43 -5.20 -0.03 6.64 16 13 C -0.54 -14.75 9.28 -34.44 -0.32 -15.07 16 14 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 15 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 16 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 17 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 18 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 C 0.04 0.48 6.02 -2.76 -0.02 0.46 16 22 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.07 0.68 7.54 -51.93 -0.39 0.29 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.03 0.31 8.11 -51.93 -0.42 -0.11 16 27 H 0.34 2.10 9.08 -39.29 -0.36 1.74 16 28 H 0.34 2.58 8.07 -39.29 -0.32 2.26 16 29 H 0.07 0.76 7.86 -51.93 -0.41 0.35 16 30 H 0.07 0.81 7.81 -51.93 -0.41 0.40 16 31 H 0.11 2.11 5.97 -51.93 -0.31 1.80 16 32 H 0.04 0.56 8.02 -51.93 -0.42 0.15 16 33 H 0.06 0.76 7.81 -51.93 -0.41 0.36 16 34 H 0.10 1.29 8.14 -51.93 -0.42 0.86 16 35 H 0.39 7.02 8.32 -40.82 -0.34 6.68 16 36 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 39 H 0.05 0.50 7.11 -51.93 -0.37 0.13 16 40 H 0.08 0.82 7.69 -51.93 -0.40 0.42 16 LS Contribution 319.44 15.07 4.81 4.81 Total: -1.00 -31.45 319.44 -8.21 -39.66 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -6.61 Total: 6.68 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -0.55 Total: 1.81 kcal Atomic # 7 Polarization: -55.15 SS G_CDS: -0.92 Total: -56.07 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.08 Total: -12.75 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.45 -8.21 -39.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309189016.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.346 kcal (2) G-P(sol) polarization free energy of solvation -31.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.40 seconds