Wall clock time and date at job start Mon Mar 30 2020 04:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45196 * 109.47308 * 2 1 4 4 C 1.34234 * 117.00192 * 180.02562 * 3 2 1 5 5 O 1.20820 * 119.99913 * 359.97438 * 4 3 2 6 6 C 1.50694 * 119.99825 * 179.97438 * 4 3 2 7 7 H 1.09000 * 109.47406 * 325.17546 * 6 4 3 8 8 C 1.53004 * 109.47123 * 205.17531 * 6 4 3 9 9 C 1.50704 * 109.46888 * 65.00053 * 8 6 4 10 10 H 1.07996 * 119.99978 * 359.97438 * 9 8 6 11 11 C 1.37882 * 119.99814 * 179.72735 * 9 8 6 12 12 N 1.31513 * 119.99521 * 180.27191 * 11 9 8 13 13 Si 1.86796 * 120.00130 * 0.27414 * 11 9 8 14 14 H 1.48503 * 109.47201 * 89.99713 * 13 11 9 15 15 H 1.48497 * 109.47350 * 210.00183 * 13 11 9 16 16 H 1.48500 * 109.47304 * 330.00240 * 13 11 9 17 17 C 1.52999 * 109.47513 * 85.17736 * 6 4 3 18 18 H 1.09001 * 109.46955 * 306.20160 * 17 6 4 19 19 C 1.53003 * 109.47147 * 66.19693 * 17 6 4 20 20 N 1.46897 * 109.47406 * 186.20082 * 17 6 4 21 21 C 1.46901 * 110.99977 * 151.59138 * 20 17 6 22 22 C 1.52997 * 117.49645 * 223.61879 * 21 20 17 23 23 C 1.52998 * 60.00219 * 252.51355 * 22 21 20 24 24 H 1.08996 * 109.47051 * 60.00281 * 1 2 3 25 25 H 1.08998 * 109.47197 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46972 * 300.00445 * 1 2 3 27 27 H 1.09002 * 109.46972 * 239.99555 * 2 1 3 28 28 H 1.09004 * 109.46914 * 119.99999 * 2 1 3 29 29 H 1.09001 * 109.47110 * 305.00291 * 8 6 4 30 30 H 1.08996 * 109.47467 * 184.99628 * 8 6 4 31 31 H 0.97008 * 119.99440 * 179.97438 * 12 11 9 32 32 H 1.08991 * 109.47194 * 180.02562 * 19 17 6 33 33 H 1.09004 * 109.47245 * 300.00854 * 19 17 6 34 34 H 1.09001 * 109.46812 * 60.00379 * 19 17 6 35 35 H 1.00892 * 111.00220 * 27.63216 * 20 17 6 36 36 H 1.08996 * 115.54915 * 9.33042 * 21 20 17 37 37 H 1.08997 * 117.49977 * 0.02562 * 22 21 20 38 38 H 1.09001 * 117.49988 * 145.01973 * 22 21 20 39 39 H 1.09003 * 117.49877 * 252.51161 * 23 22 21 40 40 H 1.08997 * 117.50176 * 107.48924 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9207 2.9373 -0.0012 7 1 3.2799 3.5954 -0.5880 8 6 5.3218 2.9095 -0.6153 9 6 5.2262 2.5170 -2.0672 10 1 4.2625 2.3078 -2.5076 11 6 6.3685 2.4298 -2.8344 12 7 6.2844 2.0924 -4.1028 13 14 8.0353 2.7907 -2.0724 14 1 8.6091 1.5372 -1.5204 15 1 8.9461 3.3372 -3.1101 16 1 7.8757 3.7847 -0.9807 17 6 4.0042 3.4555 1.4360 18 1 3.0260 3.3721 1.9096 19 6 5.0225 2.6247 2.2194 20 7 4.4247 4.8629 1.4255 21 6 3.8985 5.5783 2.5957 22 6 3.3130 6.9731 2.3665 23 6 4.6629 6.8162 3.0694 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 5.9376 2.1847 -0.0828 30 1 5.7734 3.8983 -0.5353 31 1 7.0880 2.0315 -4.6427 32 1 5.0816 2.9935 3.2433 33 1 4.7105 1.5803 2.2271 34 1 6.0007 2.7081 1.7458 35 1 4.1463 5.3171 0.5687 36 1 3.4301 4.9542 3.3567 37 1 3.3178 7.3597 1.3474 38 1 2.4589 7.2669 2.9767 39 1 4.6969 7.0068 4.1421 40 1 5.5561 7.0997 2.5128 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309414059.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:58 Heat of formation + Delta-G solvation = -71.009004 kcal Electronic energy + Delta-G solvation = -19772.280043 eV Core-core repulsion = 16780.723322 eV Total energy + Delta-G solvation = -2991.556721 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.07555 -38.14628 -36.42599 -35.19987 -32.74759 -31.53167 -30.57588 -28.53038 -26.42582 -23.35047 -22.33145 -21.97667 -21.71449 -20.75248 -18.95871 -17.07331 -16.98970 -16.22118 -15.85775 -15.59663 -14.94263 -14.66770 -14.08128 -13.63344 -13.23333 -12.98826 -12.84746 -12.60405 -12.47684 -12.12236 -11.75713 -11.69910 -11.50072 -11.43070 -11.31794 -11.12694 -10.80606 -10.71231 -10.35922 -10.18809 -10.10513 -9.85644 -9.67739 -9.52753 -9.14753 -8.46840 -8.07638 -5.98915 -3.96503 2.96328 3.18194 3.39066 3.45164 3.50195 3.86193 4.20688 4.52002 4.93490 4.97856 5.09375 5.12371 5.14049 5.21135 5.29871 5.38849 5.44885 5.47493 5.60334 5.64044 5.66205 5.86986 5.92489 5.94394 6.05240 6.13044 6.16172 6.18895 6.22137 6.45974 6.68115 7.00719 7.24316 7.26778 7.38639 7.51557 7.80971 8.50970 8.52776 9.01737 9.63009 11.14688 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.011060 B = 0.009447 C = 0.005706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2531.052300 B = 2963.335237 C = 4906.197307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.060 3.940 3 O -0.369 6.369 4 C 0.477 3.523 5 O -0.487 6.487 6 C -0.067 4.067 7 H 0.093 0.907 8 C 0.002 3.998 9 C -0.519 4.519 10 H 0.066 0.934 11 C 0.070 3.930 12 N -0.904 5.904 13 Si 0.877 3.123 14 H -0.277 1.277 15 H -0.289 1.289 16 H -0.260 1.260 17 C 0.098 3.902 18 H 0.047 0.953 19 C -0.144 4.144 20 N -0.646 5.646 21 C 0.028 3.972 22 C -0.210 4.210 23 C -0.174 4.174 24 H 0.065 0.935 25 H 0.074 0.926 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.032 0.968 30 H 0.042 0.958 31 H 0.262 0.738 32 H 0.049 0.951 33 H 0.055 0.945 34 H 0.074 0.926 35 H 0.350 0.650 36 H 0.107 0.893 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.156 4.017 13.655 16.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.014 4.014 3 O -0.288 6.288 4 C 0.318 3.682 5 O -0.371 6.371 6 C -0.087 4.087 7 H 0.112 0.888 8 C -0.035 4.035 9 C -0.556 4.556 10 H 0.084 0.916 11 C -0.131 4.131 12 N -0.543 5.543 13 Si 0.704 3.296 14 H -0.203 1.203 15 H -0.216 1.216 16 H -0.184 1.184 17 C -0.011 4.011 18 H 0.065 0.935 19 C -0.201 4.201 20 N -0.278 5.278 21 C -0.083 4.083 22 C -0.249 4.249 23 C -0.212 4.212 24 H 0.085 0.915 25 H 0.093 0.907 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.093 0.907 35 H 0.171 0.829 36 H 0.124 0.876 37 H 0.114 0.886 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.226 3.502 13.761 16.410 hybrid contribution -0.023 0.038 -0.140 0.147 sum -8.249 3.540 13.620 16.312 Atomic orbital electron populations 1.21777 0.93287 1.02433 1.03179 1.22881 0.94777 0.81408 1.02352 1.86508 1.25935 1.31402 1.84930 1.23594 0.79576 0.93038 0.71984 1.90617 1.60044 1.42840 1.43598 1.21329 1.01337 0.89886 0.96167 0.88844 1.19639 0.89098 0.98371 0.96407 1.21031 0.95100 1.46700 0.92819 0.91600 1.24927 0.99060 0.94457 0.94624 1.69918 1.28997 1.48746 1.06636 0.86810 0.84138 0.79290 0.79337 1.20304 1.21567 1.18426 1.21461 0.96943 0.88212 0.94495 0.93483 1.21905 1.00807 0.98386 0.99041 1.60240 1.61726 1.01606 1.04211 1.22483 1.00965 0.88676 0.96216 1.23431 0.97403 1.01783 1.02298 1.23096 0.95663 1.02363 1.00084 0.91548 0.90719 0.91904 0.91274 0.91858 0.95011 0.94017 0.92827 0.93177 0.92613 0.90698 0.82887 0.87566 0.88609 0.89105 0.89124 0.88359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 10.29 37.16 0.38 -1.26 16 2 C 0.06 0.90 6.19 37.16 0.23 1.13 16 3 O -0.37 -6.70 10.22 -39.27 -0.40 -7.10 16 4 C 0.48 9.92 5.70 36.00 0.21 10.12 16 5 O -0.49 -11.56 14.98 -18.75 -0.28 -11.84 16 6 C -0.07 -1.32 1.93 -91.77 -0.18 -1.50 16 7 H 0.09 1.77 8.00 -51.93 -0.42 1.35 16 8 C 0.00 0.05 2.45 -27.88 -0.07 -0.02 16 9 C -0.52 -14.89 8.98 -34.44 -0.31 -15.20 16 10 H 0.07 2.05 7.85 -52.49 -0.41 1.64 16 11 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 12 N -0.90 -28.43 13.96 55.43 0.77 -27.66 16 13 Si 0.88 22.32 27.47 -169.99 -4.67 17.65 16 14 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 15 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 16 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 17 C 0.10 1.58 2.30 -67.71 -0.16 1.42 16 18 H 0.05 0.69 7.63 -51.93 -0.40 0.29 16 19 C -0.14 -2.35 8.76 37.16 0.33 -2.03 16 20 N -0.65 -9.56 6.03 -99.74 -0.60 -10.16 16 21 C 0.03 0.33 6.14 -67.71 -0.42 -0.08 16 22 C -0.21 -2.20 10.23 -26.73 -0.27 -2.47 16 23 C -0.17 -1.91 10.46 -26.73 -0.28 -2.19 16 24 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 1.11 8.13 -51.93 -0.42 0.69 16 28 H 0.06 0.90 8.13 -51.93 -0.42 0.47 16 29 H 0.03 0.79 5.62 -51.93 -0.29 0.50 16 30 H 0.04 0.98 6.71 -51.93 -0.35 0.63 16 31 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.94 7.01 -51.93 -0.36 0.58 16 34 H 0.07 1.37 6.45 -51.93 -0.33 1.04 16 35 H 0.35 5.14 8.00 -39.30 -0.31 4.83 16 36 H 0.11 1.21 7.72 -51.93 -0.40 0.81 16 37 H 0.10 1.01 8.09 -51.93 -0.42 0.59 16 38 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 326.95 15.07 4.93 4.93 Total: -1.00 -32.73 326.95 -7.56 -40.28 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -6.67 Total: 3.98 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: -0.63 Total: -10.08 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: 0.17 Total: -37.82 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -0.68 Total: -18.94 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.67 Total: 17.65 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.73 -7.56 -40.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309414059.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.726 kcal (2) G-P(sol) polarization free energy of solvation -32.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds