Wall clock time and date at job start Mon Mar 30 2020 04:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45196 * 109.47308 * 2 1 4 4 C 1.34234 * 117.00192 * 180.02562 * 3 2 1 5 5 O 1.20820 * 119.99913 * 359.97438 * 4 3 2 6 6 C 1.50694 * 119.99825 * 179.97438 * 4 3 2 7 7 H 1.09000 * 109.47406 * 325.17546 * 6 4 3 8 8 C 1.53004 * 109.47123 * 205.17531 * 6 4 3 9 9 C 1.50704 * 109.46888 * 65.00053 * 8 6 4 10 10 H 1.07996 * 119.99978 * 359.97438 * 9 8 6 11 11 C 1.37882 * 119.99814 * 179.72735 * 9 8 6 12 12 N 1.31513 * 119.99521 * 180.27191 * 11 9 8 13 13 Si 1.86796 * 120.00130 * 0.27414 * 11 9 8 14 14 H 1.48503 * 109.47201 * 89.99713 * 13 11 9 15 15 H 1.48497 * 109.47350 * 210.00183 * 13 11 9 16 16 H 1.48500 * 109.47304 * 330.00240 * 13 11 9 17 17 C 1.52999 * 109.47513 * 85.17736 * 6 4 3 18 18 H 1.09001 * 109.46955 * 306.20160 * 17 6 4 19 19 C 1.53003 * 109.47147 * 66.19693 * 17 6 4 20 20 N 1.46897 * 109.47406 * 186.20082 * 17 6 4 21 21 C 1.46901 * 110.99977 * 151.59138 * 20 17 6 22 22 C 1.52997 * 117.49645 * 223.61879 * 21 20 17 23 23 C 1.52998 * 60.00219 * 252.51355 * 22 21 20 24 24 H 1.08996 * 109.47051 * 60.00281 * 1 2 3 25 25 H 1.08998 * 109.47197 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46972 * 300.00445 * 1 2 3 27 27 H 1.09002 * 109.46972 * 239.99555 * 2 1 3 28 28 H 1.09004 * 109.46914 * 119.99999 * 2 1 3 29 29 H 1.09001 * 109.47110 * 305.00291 * 8 6 4 30 30 H 1.08996 * 109.47467 * 184.99628 * 8 6 4 31 31 H 0.97008 * 119.99440 * 179.97438 * 12 11 9 32 32 H 1.08991 * 109.47194 * 180.02562 * 19 17 6 33 33 H 1.09004 * 109.47245 * 300.00854 * 19 17 6 34 34 H 1.09001 * 109.46812 * 60.00379 * 19 17 6 35 35 H 1.00892 * 111.00220 * 27.63216 * 20 17 6 36 36 H 1.08996 * 115.54915 * 9.33042 * 21 20 17 37 37 H 1.08997 * 117.49977 * 0.02562 * 22 21 20 38 38 H 1.09001 * 117.49988 * 145.01973 * 22 21 20 39 39 H 1.09003 * 117.49877 * 252.51161 * 23 22 21 40 40 H 1.08997 * 117.50176 * 107.48924 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9207 2.9373 -0.0012 7 1 3.2799 3.5954 -0.5880 8 6 5.3218 2.9095 -0.6153 9 6 5.2262 2.5170 -2.0672 10 1 4.2625 2.3078 -2.5076 11 6 6.3685 2.4298 -2.8344 12 7 6.2844 2.0924 -4.1028 13 14 8.0353 2.7907 -2.0724 14 1 8.6091 1.5372 -1.5204 15 1 8.9461 3.3372 -3.1101 16 1 7.8757 3.7847 -0.9807 17 6 4.0042 3.4555 1.4360 18 1 3.0260 3.3721 1.9096 19 6 5.0225 2.6247 2.2194 20 7 4.4247 4.8629 1.4255 21 6 3.8985 5.5783 2.5957 22 6 3.3130 6.9731 2.3665 23 6 4.6629 6.8162 3.0694 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 5.9376 2.1847 -0.0828 30 1 5.7734 3.8983 -0.5353 31 1 7.0880 2.0315 -4.6427 32 1 5.0816 2.9935 3.2433 33 1 4.7105 1.5803 2.2271 34 1 6.0007 2.7081 1.7458 35 1 4.1463 5.3171 0.5687 36 1 3.4301 4.9542 3.3567 37 1 3.3178 7.3597 1.3474 38 1 2.4589 7.2669 2.9767 39 1 4.6969 7.0068 4.1421 40 1 5.5561 7.0997 2.5128 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309414059.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:57 Heat of formation + Delta-G solvation = -92.229701 kcal Electronic energy + Delta-G solvation = -19773.200242 eV Core-core repulsion = 16780.723322 eV Total energy + Delta-G solvation = -2992.476919 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.65734 -39.28066 -37.82092 -36.63123 -34.83170 -32.71878 -32.18596 -29.90446 -28.17668 -24.78183 -23.71794 -23.13773 -22.94078 -21.83963 -20.51595 -19.09132 -18.64241 -17.66530 -17.29938 -16.72452 -16.42473 -16.18478 -15.48817 -15.03427 -14.74557 -14.63151 -14.18767 -14.01697 -13.78959 -13.46155 -13.30960 -13.03420 -12.87295 -12.67920 -12.49684 -12.39681 -12.28980 -12.06397 -11.96527 -11.76131 -11.48715 -11.43292 -11.36060 -11.24350 -10.99615 -10.74373 -9.14296 -8.28625 -6.30665 1.32457 1.36241 1.37427 1.49878 1.76172 2.36890 2.94103 3.08937 3.17708 3.75536 3.85954 3.91115 3.99897 4.10423 4.12188 4.16893 4.31090 4.33591 4.35283 4.62973 4.65563 4.68883 4.87888 4.88958 4.92320 4.97349 5.01876 5.12924 5.15109 5.24629 5.33504 5.37241 5.47005 5.54876 5.65593 6.14941 6.22155 6.39564 6.72840 6.90423 7.32227 8.88520 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.011060 B = 0.009447 C = 0.005706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2531.052300 B = 2963.335237 C = 4906.197307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.049 3.951 3 O -0.367 6.367 4 C 0.476 3.524 5 O -0.525 6.525 6 C -0.067 4.067 7 H 0.098 0.902 8 C 0.013 3.987 9 C -0.521 4.521 10 H 0.025 0.975 11 C 0.007 3.993 12 N -0.952 5.952 13 Si 0.943 3.057 14 H -0.278 1.278 15 H -0.282 1.282 16 H -0.236 1.236 17 C 0.112 3.888 18 H 0.068 0.932 19 C -0.140 4.140 20 N -0.657 5.657 21 C 0.012 3.988 22 C -0.199 4.199 23 C -0.171 4.171 24 H 0.063 0.937 25 H 0.102 0.898 26 H 0.077 0.923 27 H 0.049 0.951 28 H 0.072 0.928 29 H 0.021 0.979 30 H 0.051 0.949 31 H 0.265 0.735 32 H 0.075 0.925 33 H 0.044 0.956 34 H 0.052 0.948 35 H 0.348 0.652 36 H 0.118 0.882 37 H 0.092 0.908 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.749 5.262 16.143 19.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.025 4.025 3 O -0.285 6.285 4 C 0.319 3.681 5 O -0.413 6.413 6 C -0.086 4.086 7 H 0.116 0.884 8 C -0.024 4.024 9 C -0.559 4.559 10 H 0.043 0.957 11 C -0.189 4.189 12 N -0.593 5.593 13 Si 0.767 3.233 14 H -0.204 1.204 15 H -0.208 1.208 16 H -0.159 1.159 17 C 0.002 3.998 18 H 0.086 0.914 19 C -0.198 4.198 20 N -0.289 5.289 21 C -0.099 4.099 22 C -0.237 4.237 23 C -0.210 4.210 24 H 0.082 0.918 25 H 0.120 0.880 26 H 0.096 0.904 27 H 0.068 0.932 28 H 0.090 0.910 29 H 0.040 0.960 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.169 0.831 36 H 0.136 0.864 37 H 0.110 0.890 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.856 4.772 16.269 19.128 hybrid contribution 0.034 -0.394 -0.949 1.028 sum -8.821 4.378 15.321 18.213 Atomic orbital electron populations 1.21798 0.89689 1.04460 1.03748 1.23262 0.97567 0.79737 1.01901 1.86496 1.24322 1.33426 1.84217 1.23831 0.80271 0.93039 0.70952 1.90595 1.61060 1.44020 1.45619 1.21264 0.98886 0.89736 0.98753 0.88375 1.19435 0.91782 0.98018 0.93140 1.21359 0.93369 1.45809 0.95372 0.95694 1.25887 1.03490 0.94506 0.95028 1.70068 1.30265 1.50632 1.08355 0.85755 0.78843 0.79562 0.79131 1.20379 1.20795 1.15920 1.21317 0.97951 0.88935 0.91574 0.91407 1.21858 0.99543 0.97997 1.00393 1.60237 1.62414 1.01007 1.05219 1.22593 1.02331 0.89317 0.95617 1.23475 0.97789 1.00018 1.02439 1.23144 0.95479 1.01256 1.01090 0.91808 0.87950 0.90450 0.93210 0.90980 0.96044 0.93104 0.92670 0.90578 0.93728 0.92864 0.83092 0.86409 0.88957 0.87273 0.87332 0.89530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 10.29 71.98 0.74 -2.04 16 2 C 0.05 1.45 6.19 71.98 0.45 1.89 16 3 O -0.37 -13.21 10.22 -51.45 -0.53 -13.73 16 4 C 0.48 20.00 5.70 71.23 0.41 20.40 16 5 O -0.53 -25.59 14.98 21.98 0.33 -25.26 16 6 C -0.07 -2.60 1.93 -11.54 -0.02 -2.62 16 7 H 0.10 3.70 8.00 -2.39 -0.02 3.68 16 8 C 0.01 0.64 2.45 29.85 0.07 0.71 16 9 C -0.52 -30.78 8.98 25.60 0.23 -30.55 16 10 H 0.02 1.63 7.85 -2.91 -0.02 1.60 16 11 C 0.01 0.44 5.47 84.66 0.46 0.91 16 12 N -0.95 -61.70 13.96 21.45 0.30 -61.40 16 13 Si 0.94 46.34 27.47 68.60 1.88 48.23 16 14 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 15 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 16 H -0.24 -10.60 6.54 99.48 0.65 -9.95 16 17 C 0.11 3.38 2.30 44.92 0.10 3.49 16 18 H 0.07 1.80 7.63 -2.39 -0.02 1.78 16 19 C -0.14 -4.37 8.76 71.98 0.63 -3.74 16 20 N -0.66 -18.04 6.03 -469.47 -2.83 -20.87 16 21 C 0.01 0.25 6.14 44.92 0.28 0.52 16 22 C -0.20 -3.54 10.23 30.59 0.31 -3.23 16 23 C -0.17 -3.26 10.46 30.59 0.32 -2.94 16 24 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.05 1.65 8.13 -2.39 -0.02 1.63 16 28 H 0.07 2.00 8.13 -2.38 -0.02 1.98 16 29 H 0.02 1.07 5.62 -2.39 -0.01 1.06 16 30 H 0.05 2.32 6.71 -2.39 -0.02 2.31 16 31 H 0.26 16.03 8.31 -92.70 -0.77 15.26 16 32 H 0.08 1.94 8.14 -2.39 -0.02 1.93 16 33 H 0.04 1.47 7.01 -2.38 -0.02 1.45 16 34 H 0.05 1.88 6.45 -2.39 -0.02 1.87 16 35 H 0.35 9.66 8.00 -89.70 -0.72 8.94 16 36 H 0.12 2.24 7.72 -2.39 -0.02 2.22 16 37 H 0.09 1.73 8.09 -2.39 -0.02 1.71 16 38 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -72.68 326.95 3.38 -69.30 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: 0.24 Total: 20.93 kcal Atomic # 6 Polarization: -21.17 SS G_CDS: 3.98 Total: -17.19 kcal Atomic # 7 Polarization: -79.74 SS G_CDS: -2.53 Total: -82.27 kcal Atomic # 8 Polarization: -38.80 SS G_CDS: -0.20 Total: -38.99 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 1.88 Total: 48.23 kcal Total: -72.68 3.38 -69.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309414059.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.927 kcal (2) G-P(sol) polarization free energy of solvation -72.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds