Wall clock time and date at job start Mon Mar 30 2020 05:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34227 * 116.99635 * 2 1 4 4 O 1.20825 * 120.00690 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99732 * 180.02562 * 3 2 1 6 6 C 1.52993 * 109.47462 * 185.70211 * 5 3 2 7 7 N 1.46901 * 110.01695 * 53.45117 * 6 5 3 8 8 C 1.46899 * 110.99953 * 184.96884 * 7 6 5 9 9 C 1.53008 * 109.46753 * 185.73243 * 8 7 6 10 10 C 1.50701 * 109.46605 * 180.02562 * 9 8 7 11 11 H 1.07997 * 120.00316 * 359.97438 * 10 9 8 12 12 C 1.37883 * 119.99852 * 180.02562 * 10 9 8 13 13 N 1.31517 * 119.99677 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00281 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47275 * 59.99499 * 14 12 10 16 16 H 1.48495 * 109.47227 * 179.97438 * 14 12 10 17 17 H 1.48510 * 109.46860 * 299.99595 * 14 12 10 18 18 C 1.54273 * 110.03282 * 292.01443 * 6 5 3 19 19 C 1.54893 * 104.19693 * 217.10369 * 18 6 5 20 20 C 1.54897 * 102.74517 * 37.93869 * 19 18 6 21 21 C 1.53870 * 110.03630 * 174.84835 * 6 5 3 22 22 H 1.09006 * 109.47014 * 60.00002 * 1 2 3 23 23 H 1.09002 * 109.47058 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47302 * 300.00043 * 1 2 3 25 25 H 1.09002 * 109.47145 * 65.70153 * 5 3 2 26 26 H 1.09004 * 109.47055 * 305.70023 * 5 3 2 27 27 H 1.00899 * 110.99574 * 61.01765 * 7 6 5 28 28 H 1.08994 * 109.47585 * 305.72840 * 8 7 6 29 29 H 1.08996 * 109.47220 * 65.73567 * 8 7 6 30 30 H 1.08993 * 109.47454 * 299.99884 * 9 8 7 31 31 H 1.08994 * 109.47202 * 60.00676 * 9 8 7 32 32 H 0.96996 * 119.99711 * 180.02562 * 13 12 10 33 33 H 1.08999 * 110.48245 * 335.77929 * 18 6 5 34 34 H 1.08998 * 110.48883 * 98.42300 * 18 6 5 35 35 H 1.08993 * 110.75389 * 279.62906 * 19 18 6 36 36 H 1.08992 * 110.75545 * 156.25754 * 19 18 6 37 37 H 1.09004 * 110.47851 * 203.37842 * 20 19 18 38 38 H 1.09001 * 110.48203 * 80.73900 * 20 19 18 39 39 H 1.09007 * 110.03296 * 238.56789 * 21 6 5 40 40 H 1.09001 * 110.03511 * 359.97438 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0006 2.7349 0.1429 7 7 3.3614 3.3362 1.3209 8 6 3.6698 4.7695 1.4131 9 6 3.1089 5.3286 2.7223 10 6 3.4248 6.7992 2.8165 11 1 3.9712 7.2861 2.0223 12 6 3.0170 7.5227 3.9171 13 7 2.3521 6.9296 4.8844 14 14 3.4091 9.3453 4.0343 15 1 2.7926 10.0591 2.8873 16 1 2.8647 9.8880 5.3049 17 1 4.8813 9.5379 4.0038 18 6 3.6221 3.5259 -1.1264 19 6 4.8013 4.5103 -1.3262 20 6 6.0299 3.6583 -0.9214 21 6 5.5314 2.8192 0.2731 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 3.9509 0.8718 -0.9375 26 1 3.9609 0.6949 0.8337 27 1 3.6313 2.8533 2.1647 28 1 4.7503 4.9109 1.3910 29 1 3.2175 5.2933 0.5710 30 1 2.0284 5.1873 2.7444 31 1 3.5613 4.8049 3.5643 32 1 2.0649 7.4386 5.6585 33 1 3.5354 2.8559 -1.9817 34 1 2.6914 4.0719 -0.9724 35 1 4.6979 5.3749 -0.6708 36 1 4.8729 4.8207 -2.3685 37 1 6.8563 4.3011 -0.6177 38 1 6.3320 3.0098 -1.7437 39 1 5.8002 3.3070 1.2101 40 1 5.9651 1.8199 0.2346 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336754312.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:02 Heat of formation + Delta-G solvation = -97.229690 kcal Electronic energy + Delta-G solvation = -19890.781987 eV Core-core repulsion = 16898.088253 eV Total energy + Delta-G solvation = -2992.693735 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.43226 -38.94693 -36.03891 -34.05764 -32.59425 -31.46017 -28.76263 -28.51622 -27.36580 -25.14015 -23.76031 -21.14580 -20.68729 -20.23705 -18.76479 -17.29647 -16.62448 -16.24817 -16.12033 -15.25975 -14.83523 -14.52864 -14.29795 -13.86231 -13.44307 -13.20200 -12.90949 -12.49976 -12.27166 -11.96287 -11.76936 -11.62319 -11.12713 -11.00113 -10.94800 -10.88776 -10.74211 -10.54502 -10.50814 -10.44516 -10.21795 -9.95253 -9.85957 -9.22952 -9.08593 -8.29588 -7.60070 -5.94366 -3.96446 2.61244 2.91835 3.36409 3.40620 3.43051 4.45525 4.59956 4.69335 4.76745 5.03853 5.15964 5.18961 5.25583 5.28393 5.34925 5.41489 5.57853 5.60698 5.66568 5.75933 5.82861 5.92738 6.02739 6.10682 6.20536 6.32706 6.50352 6.52826 6.55298 6.63868 6.72605 7.12362 7.60086 7.79407 7.93962 8.07157 8.14232 8.18291 8.50759 9.10932 9.66782 11.17182 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.020873 B = 0.005641 C = 0.004759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.128907 B = 4962.263720 C = 5881.836180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.375 6.375 3 C 0.452 3.548 4 O -0.460 6.460 5 C -0.096 4.096 6 C 0.123 3.877 7 N -0.667 5.667 8 C 0.069 3.931 9 C 0.024 3.976 10 C -0.518 4.518 11 H 0.053 0.947 12 C 0.058 3.942 13 N -0.894 5.894 14 Si 0.891 3.109 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.278 1.278 18 C -0.107 4.107 19 C -0.135 4.135 20 C -0.119 4.119 21 C -0.154 4.154 22 H 0.058 0.942 23 H 0.093 0.907 24 H 0.063 0.937 25 H 0.102 0.898 26 H 0.097 0.903 27 H 0.330 0.670 28 H 0.019 0.981 29 H 0.063 0.937 30 H 0.024 0.976 31 H 0.010 0.990 32 H 0.260 0.740 33 H 0.057 0.943 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.073 0.927 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.298 -13.993 -12.081 18.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.293 6.293 3 C 0.292 3.708 4 O -0.342 6.342 5 C -0.134 4.134 6 C 0.031 3.969 7 N -0.297 5.297 8 C -0.059 4.059 9 C -0.014 4.014 10 C -0.557 4.557 11 H 0.071 0.929 12 C -0.143 4.143 13 N -0.534 5.534 14 Si 0.719 3.281 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.203 1.203 18 C -0.145 4.145 19 C -0.173 4.173 20 C -0.157 4.157 21 C -0.193 4.193 22 H 0.077 0.923 23 H 0.112 0.888 24 H 0.081 0.919 25 H 0.120 0.880 26 H 0.115 0.885 27 H 0.148 0.852 28 H 0.037 0.963 29 H 0.081 0.919 30 H 0.042 0.958 31 H 0.028 0.972 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.106 0.894 35 H 0.098 0.902 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.092 0.908 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.348 -13.528 -12.214 18.377 hybrid contribution 0.940 0.963 0.541 1.450 sum 3.288 -12.566 -11.673 17.464 Atomic orbital electron populations 1.23143 0.77010 1.02895 1.02540 1.86478 1.22979 1.34613 1.85246 1.23538 0.91945 0.81286 0.74038 1.90751 1.66330 1.35525 1.41604 1.21555 0.88365 0.98758 1.04713 1.21380 0.90667 0.90993 0.93908 1.60768 1.60823 1.04831 1.03245 1.22230 0.96990 0.85387 1.01288 1.19090 0.97091 0.94858 0.90335 1.21132 1.35702 0.94421 1.04436 0.92885 1.24998 0.95240 0.98271 0.95840 1.69969 1.38458 1.36102 1.08842 0.86673 0.78555 0.85584 0.77261 1.20244 1.21318 1.20333 1.22418 0.99594 0.97613 0.94872 1.22741 0.94577 0.98947 1.01008 1.22271 0.97968 0.98095 0.97339 1.22971 0.96454 1.00139 0.99769 0.92314 0.88809 0.91857 0.88000 0.88470 0.85207 0.96315 0.91910 0.95766 0.97161 0.93027 0.92431 0.89422 0.90171 0.92119 0.91957 0.92129 0.90809 0.91893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.56 101.05 1.07 1.47 16 2 O -0.37 -4.88 10.57 -39.25 -0.41 -5.30 16 3 C 0.45 6.61 7.55 36.01 0.27 6.88 16 4 O -0.46 -8.40 13.58 -18.75 -0.25 -8.65 16 5 C -0.10 -1.14 4.71 -27.89 -0.13 -1.28 16 6 C 0.12 1.76 0.56 -130.49 -0.07 1.68 16 7 N -0.67 -12.17 4.59 -98.83 -0.45 -12.62 16 8 C 0.07 1.47 3.80 -3.82 -0.01 1.46 16 9 C 0.02 0.64 5.17 -27.88 -0.14 0.49 16 10 C -0.52 -14.99 9.11 -34.44 -0.31 -15.31 16 11 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 12 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 13 N -0.89 -27.56 13.29 55.43 0.74 -26.82 16 14 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 C -0.11 -1.57 4.36 -25.07 -0.11 -1.68 16 19 C -0.14 -1.86 6.28 -24.73 -0.16 -2.02 16 20 C -0.12 -1.44 6.83 -25.07 -0.17 -1.62 16 21 C -0.15 -1.97 5.56 -25.62 -0.14 -2.11 16 22 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 23 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 25 H 0.10 0.96 8.00 -51.93 -0.42 0.54 16 26 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.33 5.89 8.69 -39.29 -0.34 5.55 16 28 H 0.02 0.39 5.90 -51.93 -0.31 0.09 16 29 H 0.06 1.39 5.82 -51.93 -0.30 1.09 16 30 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 33 H 0.06 0.74 7.76 -51.93 -0.40 0.34 16 34 H 0.09 1.56 6.65 -51.93 -0.35 1.22 16 35 H 0.08 1.29 5.83 -51.93 -0.30 0.99 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.07 1.08 6.67 -51.92 -0.35 0.73 16 40 H 0.06 0.66 7.67 -51.93 -0.40 0.26 16 LS Contribution 315.12 15.07 4.75 4.75 Total: -1.00 -32.65 315.12 -7.18 -39.83 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -6.51 Total: 2.18 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: -0.01 Total: -10.43 kcal Atomic # 7 Polarization: -39.73 SS G_CDS: 0.28 Total: -39.44 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: -0.67 Total: -13.95 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.65 -7.18 -39.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336754312.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.401 kcal (2) G-P(sol) polarization free energy of solvation -32.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds