Wall clock time and date at job start Mon Mar 30 2020 05:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34227 * 116.99635 * 2 1 4 4 O 1.20825 * 120.00690 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99732 * 180.02562 * 3 2 1 6 6 C 1.52993 * 109.47462 * 185.70211 * 5 3 2 7 7 N 1.46901 * 110.01695 * 53.45117 * 6 5 3 8 8 C 1.46899 * 110.99953 * 184.96884 * 7 6 5 9 9 C 1.53008 * 109.46753 * 185.73243 * 8 7 6 10 10 C 1.50701 * 109.46605 * 180.02562 * 9 8 7 11 11 H 1.07997 * 120.00316 * 359.97438 * 10 9 8 12 12 C 1.37883 * 119.99852 * 180.02562 * 10 9 8 13 13 N 1.31517 * 119.99677 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00281 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47275 * 59.99499 * 14 12 10 16 16 H 1.48495 * 109.47227 * 179.97438 * 14 12 10 17 17 H 1.48510 * 109.46860 * 299.99595 * 14 12 10 18 18 C 1.54273 * 110.03282 * 292.01443 * 6 5 3 19 19 C 1.54893 * 104.19693 * 217.10369 * 18 6 5 20 20 C 1.54897 * 102.74517 * 37.93869 * 19 18 6 21 21 C 1.53870 * 110.03630 * 174.84835 * 6 5 3 22 22 H 1.09006 * 109.47014 * 60.00002 * 1 2 3 23 23 H 1.09002 * 109.47058 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47302 * 300.00043 * 1 2 3 25 25 H 1.09002 * 109.47145 * 65.70153 * 5 3 2 26 26 H 1.09004 * 109.47055 * 305.70023 * 5 3 2 27 27 H 1.00899 * 110.99574 * 61.01765 * 7 6 5 28 28 H 1.08994 * 109.47585 * 305.72840 * 8 7 6 29 29 H 1.08996 * 109.47220 * 65.73567 * 8 7 6 30 30 H 1.08993 * 109.47454 * 299.99884 * 9 8 7 31 31 H 1.08994 * 109.47202 * 60.00676 * 9 8 7 32 32 H 0.96996 * 119.99711 * 180.02562 * 13 12 10 33 33 H 1.08999 * 110.48245 * 335.77929 * 18 6 5 34 34 H 1.08998 * 110.48883 * 98.42300 * 18 6 5 35 35 H 1.08993 * 110.75389 * 279.62906 * 19 18 6 36 36 H 1.08992 * 110.75545 * 156.25754 * 19 18 6 37 37 H 1.09004 * 110.47851 * 203.37842 * 20 19 18 38 38 H 1.09001 * 110.48203 * 80.73900 * 20 19 18 39 39 H 1.09007 * 110.03296 * 238.56789 * 21 6 5 40 40 H 1.09001 * 110.03511 * 359.97438 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0006 2.7349 0.1429 7 7 3.3614 3.3362 1.3209 8 6 3.6698 4.7695 1.4131 9 6 3.1089 5.3286 2.7223 10 6 3.4248 6.7992 2.8165 11 1 3.9712 7.2861 2.0223 12 6 3.0170 7.5227 3.9171 13 7 2.3521 6.9296 4.8844 14 14 3.4091 9.3453 4.0343 15 1 2.7926 10.0591 2.8873 16 1 2.8647 9.8880 5.3049 17 1 4.8813 9.5379 4.0038 18 6 3.6221 3.5259 -1.1264 19 6 4.8013 4.5103 -1.3262 20 6 6.0299 3.6583 -0.9214 21 6 5.5314 2.8192 0.2731 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 3.9509 0.8718 -0.9375 26 1 3.9609 0.6949 0.8337 27 1 3.6313 2.8533 2.1647 28 1 4.7503 4.9109 1.3910 29 1 3.2175 5.2933 0.5710 30 1 2.0284 5.1873 2.7444 31 1 3.5613 4.8049 3.5643 32 1 2.0649 7.4386 5.6585 33 1 3.5354 2.8559 -1.9817 34 1 2.6914 4.0719 -0.9724 35 1 4.6979 5.3749 -0.6708 36 1 4.8729 4.8207 -2.3685 37 1 6.8563 4.3011 -0.6177 38 1 6.3320 3.0098 -1.7437 39 1 5.8002 3.3070 1.2101 40 1 5.9651 1.8199 0.2346 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336754312.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:01 Heat of formation + Delta-G solvation = -118.494424 kcal Electronic energy + Delta-G solvation = -19891.704095 eV Core-core repulsion = 16898.088253 eV Total energy + Delta-G solvation = -2993.615843 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.57043 -40.11004 -37.18365 -35.92142 -34.31346 -32.86086 -30.35926 -29.67235 -28.51079 -26.40953 -25.58779 -22.68589 -21.93345 -21.52337 -19.98480 -18.52093 -18.33123 -17.65477 -17.31659 -16.62078 -16.34288 -16.00595 -15.81889 -14.90047 -14.80790 -14.42740 -14.22179 -14.04173 -13.90160 -13.33546 -12.98340 -12.87046 -12.83698 -12.68226 -12.47399 -12.05925 -12.01369 -11.96259 -11.77544 -11.60586 -11.55806 -11.46811 -11.20358 -11.17400 -11.08228 -10.57037 -9.05848 -8.21068 -6.32775 1.37762 1.41894 1.49691 1.50258 1.94584 2.39369 3.11962 3.31636 3.63034 3.68117 3.94695 4.17880 4.32015 4.35275 4.39101 4.40918 4.53933 4.56823 4.63447 4.70691 4.73265 4.76612 4.83230 4.89599 4.99096 5.10376 5.13934 5.19362 5.32131 5.42339 5.44829 5.53203 5.62098 5.69512 5.80597 6.17016 6.38034 6.66288 6.84744 7.05744 7.36363 8.91229 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.020873 B = 0.005641 C = 0.004759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.128907 B = 4962.263720 C = 5881.836180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.373 6.373 3 C 0.450 3.550 4 O -0.507 6.507 5 C -0.091 4.091 6 C 0.118 3.882 7 N -0.679 5.679 8 C 0.097 3.903 9 C 0.032 3.968 10 C -0.542 4.542 11 H 0.059 0.941 12 C 0.000 4.000 13 N -0.934 5.934 14 Si 0.967 3.033 15 H -0.268 1.268 16 H -0.282 1.282 17 H -0.264 1.264 18 C -0.105 4.105 19 C -0.137 4.137 20 C -0.113 4.113 21 C -0.149 4.149 22 H 0.057 0.943 23 H 0.131 0.869 24 H 0.047 0.953 25 H 0.141 0.859 26 H 0.120 0.880 27 H 0.331 0.669 28 H 0.025 0.975 29 H 0.049 0.951 30 H -0.017 1.017 31 H -0.011 1.011 32 H 0.264 0.736 33 H 0.082 0.918 34 H 0.046 0.954 35 H 0.047 0.953 36 H 0.078 0.922 37 H 0.061 0.939 38 H 0.091 0.909 39 H 0.050 0.950 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.105 -15.000 -13.567 20.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.290 6.290 3 C 0.293 3.707 4 O -0.393 6.393 5 C -0.129 4.129 6 C 0.027 3.973 7 N -0.309 5.309 8 C -0.031 4.031 9 C -0.006 4.006 10 C -0.580 4.580 11 H 0.077 0.923 12 C -0.198 4.198 13 N -0.574 5.574 14 Si 0.791 3.209 15 H -0.193 1.193 16 H -0.207 1.207 17 H -0.188 1.188 18 C -0.143 4.143 19 C -0.175 4.175 20 C -0.150 4.150 21 C -0.188 4.188 22 H 0.076 0.924 23 H 0.149 0.851 24 H 0.066 0.934 25 H 0.159 0.841 26 H 0.138 0.862 27 H 0.148 0.852 28 H 0.043 0.957 29 H 0.068 0.932 30 H 0.001 0.999 31 H 0.007 0.993 32 H 0.072 0.928 33 H 0.100 0.900 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.096 0.904 37 H 0.080 0.920 38 H 0.109 0.891 39 H 0.069 0.931 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.169 -14.571 -13.719 20.443 hybrid contribution 0.293 1.192 0.991 1.578 sum 4.462 -13.379 -12.728 18.997 Atomic orbital electron populations 1.23371 0.75898 1.05067 1.01753 1.86476 1.24126 1.33713 1.84708 1.24147 0.93071 0.80970 0.72549 1.90755 1.67539 1.37053 1.43988 1.21663 0.86449 0.97140 1.07640 1.21544 0.91797 0.92291 0.91668 1.60651 1.62254 1.03092 1.04895 1.21715 0.96538 0.87443 0.97446 1.18941 0.94411 0.94683 0.92548 1.21554 1.36004 0.95583 1.04886 0.92282 1.26001 0.94740 1.03793 0.95243 1.70116 1.39403 1.38321 1.09519 0.85472 0.79030 0.78818 0.77551 1.19335 1.20678 1.18820 1.22383 0.97953 0.97953 0.96020 1.22712 0.95362 0.98002 1.01397 1.22279 0.96789 0.98045 0.97918 1.22903 0.94857 1.02041 0.98998 0.92407 0.85135 0.93439 0.84112 0.86223 0.85160 0.95697 0.93212 0.99900 0.99260 0.92775 0.89984 0.93524 0.93415 0.90380 0.92037 0.89073 0.93098 0.88408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 10.56 113.37 1.20 1.86 16 2 O -0.37 -9.10 10.57 -51.39 -0.54 -9.64 16 3 C 0.45 12.69 7.55 71.24 0.54 13.23 16 4 O -0.51 -18.96 13.58 21.97 0.30 -18.66 16 5 C -0.09 -1.91 4.71 29.85 0.14 -1.77 16 6 C 0.12 3.22 0.56 4.25 0.00 3.23 16 7 N -0.68 -25.42 4.59 -466.60 -2.14 -27.56 16 8 C 0.10 4.34 3.80 86.31 0.33 4.67 16 9 C 0.03 1.79 5.17 29.85 0.15 1.95 16 10 C -0.54 -32.34 9.11 25.60 0.23 -32.11 16 11 H 0.06 3.37 7.74 -2.91 -0.02 3.34 16 12 C 0.00 0.00 5.46 84.66 0.46 0.46 16 13 N -0.93 -59.16 13.29 21.45 0.28 -58.87 16 14 Si 0.97 45.70 29.54 68.60 2.03 47.72 16 15 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 16 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 17 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 18 C -0.11 -3.00 4.36 31.67 0.14 -2.86 16 19 C -0.14 -3.63 6.28 31.89 0.20 -3.43 16 20 C -0.11 -2.40 6.83 31.67 0.22 -2.18 16 21 C -0.15 -3.40 5.56 31.31 0.17 -3.23 16 22 H 0.06 1.19 8.13 -2.38 -0.02 1.17 16 23 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 24 H 0.05 1.12 8.13 -2.39 -0.02 1.10 16 25 H 0.14 1.93 8.00 -2.39 -0.02 1.91 16 26 H 0.12 2.03 8.14 -2.38 -0.02 2.01 16 27 H 0.33 12.11 8.69 -89.69 -0.78 11.33 16 28 H 0.03 1.08 5.90 -2.39 -0.01 1.06 16 29 H 0.05 2.34 5.82 -2.39 -0.01 2.33 16 30 H -0.02 -1.12 8.14 -2.39 -0.02 -1.14 16 31 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 32 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 33 H 0.08 1.90 7.76 -2.39 -0.02 1.89 16 34 H 0.05 1.72 6.65 -2.39 -0.02 1.71 16 35 H 0.05 1.56 5.83 -2.39 -0.01 1.55 16 36 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 38 H 0.09 1.43 8.14 -2.39 -0.02 1.42 16 39 H 0.05 1.42 6.67 -2.38 -0.02 1.40 16 40 H 0.10 1.58 7.67 -2.39 -0.02 1.57 16 Total: -1.00 -74.48 315.12 3.95 -70.52 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: 0.24 Total: 16.67 kcal Atomic # 6 Polarization: -23.97 SS G_CDS: 3.78 Total: -20.19 kcal Atomic # 7 Polarization: -84.57 SS G_CDS: -1.85 Total: -86.43 kcal Atomic # 8 Polarization: -28.05 SS G_CDS: -0.24 Total: -28.30 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.72 kcal Total: -74.48 3.95 -70.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336754312.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.973 kcal (2) G-P(sol) polarization free energy of solvation -74.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds