Wall clock time and date at job start Mon Mar 30 2020 04:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42892 * 114.00329 * 2 1 4 4 H 1.09005 * 109.47175 * 30.00111 * 3 2 1 5 5 C 1.53002 * 109.47339 * 269.99830 * 3 2 1 6 6 C 1.53002 * 109.47241 * 179.97438 * 5 3 2 7 7 C 1.53004 * 109.46842 * 60.00115 * 6 5 3 8 8 C 1.52992 * 109.47110 * 300.00096 * 7 6 5 9 9 C 1.53003 * 109.47715 * 60.00148 * 8 7 6 10 10 H 1.08999 * 109.46831 * 59.99457 * 9 8 7 11 11 C 1.50696 * 109.47490 * 179.97438 * 9 8 7 12 12 O 1.21282 * 119.99811 * 86.23043 * 11 9 8 13 13 N 1.34775 * 119.99857 * 266.22769 * 11 9 8 14 14 C 1.46501 * 119.99527 * 183.88049 * 13 11 9 15 15 C 1.46493 * 120.00100 * 3.88620 * 13 11 9 16 16 C 1.50695 * 109.47500 * 84.10845 * 15 13 11 17 17 H 1.07997 * 120.00023 * 0.02562 * 16 15 13 18 18 C 1.37883 * 120.00551 * 179.97438 * 16 15 13 19 19 N 1.31515 * 119.99518 * 359.72579 * 18 16 15 20 20 Si 1.86795 * 120.00395 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47544 * 269.72821 * 20 18 16 22 22 H 1.48501 * 109.46911 * 29.73005 * 20 18 16 23 23 H 1.48506 * 109.46991 * 149.72297 * 20 18 16 24 24 H 1.09004 * 109.46384 * 59.99772 * 1 2 3 25 25 H 1.08996 * 109.47273 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.46767 * 300.00314 * 1 2 3 27 27 H 1.08993 * 109.47101 * 299.99902 * 5 3 2 28 28 H 1.09005 * 109.46843 * 59.99966 * 5 3 2 29 29 H 1.08996 * 109.46769 * 180.02562 * 6 5 3 30 30 H 1.08999 * 109.47069 * 300.00529 * 6 5 3 31 31 H 1.09005 * 109.46887 * 59.99930 * 7 6 5 32 32 H 1.09000 * 109.47040 * 179.97438 * 7 6 5 33 33 H 1.08999 * 109.47415 * 299.99962 * 8 7 6 34 34 H 1.09005 * 109.46844 * 180.02562 * 8 7 6 35 35 H 1.09000 * 109.47393 * 275.18124 * 14 13 11 36 36 H 1.08992 * 109.47145 * 35.18831 * 14 13 11 37 37 H 1.09007 * 109.46769 * 155.18585 * 14 13 11 38 38 H 1.08999 * 109.47489 * 324.10691 * 15 13 11 39 39 H 1.09007 * 109.47292 * 204.11148 * 15 13 11 40 40 H 0.97006 * 119.99759 * 0.27504 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 0.5139 5 6 2.2178 1.7713 -1.4425 6 6 2.8396 3.1693 -1.4425 7 6 4.1883 3.1275 -0.7210 8 6 3.9807 2.6616 0.7214 9 6 3.3589 1.2636 0.7215 10 1 4.0245 0.5699 0.2077 11 6 3.1551 0.8044 2.1423 12 8 2.1420 1.1051 2.7373 13 7 4.0987 0.0597 2.7516 14 6 3.8642 -0.4581 4.1019 15 6 5.3588 -0.2320 2.0639 16 6 6.3159 0.9153 2.2606 17 1 6.0156 1.7756 2.8403 18 6 7.5752 0.8664 1.7013 19 7 7.9431 -0.1841 1.0007 20 14 8.7612 2.2889 1.9446 21 1 8.5882 3.2713 0.8446 22 1 8.4828 2.9484 3.2456 23 1 10.1555 1.7777 1.9371 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 2.8831 1.0774 -1.9563 28 1 1.2570 1.8014 -1.9563 29 1 2.9870 3.5013 -2.4701 30 1 2.1741 3.8629 -0.9287 31 1 4.8538 2.4337 -1.2347 32 1 4.6315 4.1233 -0.7213 33 1 3.3152 3.3552 1.2352 34 1 4.9415 2.6323 1.2355 35 1 4.1354 0.3019 4.8347 36 1 2.8105 -0.7126 4.2154 37 1 4.4722 -1.3488 4.2601 38 1 5.1688 -0.3681 0.9993 39 1 5.7945 -1.1430 2.4744 40 1 7.3271 -0.9226 0.8741 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339124243.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:02 Heat of formation + Delta-G solvation = -122.749981 kcal Electronic energy + Delta-G solvation = -20664.523101 eV Core-core repulsion = 17670.722723 eV Total energy + Delta-G solvation = -2993.800378 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.47527 -39.35453 -37.32119 -36.91054 -34.68564 -32.28946 -30.96366 -29.29859 -27.74937 -27.22280 -25.08648 -24.03946 -23.19836 -21.08698 -20.26378 -18.91642 -17.96816 -17.74137 -17.20204 -16.41787 -16.07058 -15.95777 -15.64667 -15.04785 -14.98628 -14.57300 -14.50284 -14.11791 -13.90478 -13.71115 -13.52895 -13.25630 -13.00389 -12.80253 -12.66127 -12.52123 -12.14934 -11.99587 -11.92619 -11.76970 -11.48249 -11.27899 -11.16401 -10.75844 -10.50996 -10.36199 -9.51511 -8.61887 -6.38653 1.55528 1.62158 1.69426 1.79983 2.24767 2.56251 2.75763 3.15108 3.53003 3.70460 3.99684 4.06701 4.18415 4.24567 4.27503 4.38156 4.41590 4.45585 4.51524 4.52229 4.53627 4.64217 4.73518 4.76156 4.78914 4.92295 5.01496 5.04188 5.12626 5.19301 5.24709 5.39502 5.48265 5.62201 5.82840 6.10977 6.25130 6.47802 6.58849 7.23253 7.39372 8.73038 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.019893 B = 0.008387 C = 0.006738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.187287 B = 3337.876685 C = 4154.831753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.412 6.412 3 C 0.110 3.890 4 H 0.062 0.938 5 C -0.132 4.132 6 C -0.110 4.110 7 C -0.114 4.114 8 C -0.106 4.106 9 C -0.092 4.092 10 H 0.080 0.920 11 C 0.525 3.475 12 O -0.595 6.595 13 N -0.607 5.607 14 C 0.093 3.907 15 C 0.239 3.761 16 C -0.608 4.608 17 H 0.046 0.954 18 C -0.015 4.015 19 N -0.927 5.927 20 Si 1.107 2.893 21 H -0.267 1.267 22 H -0.278 1.278 23 H -0.284 1.284 24 H 0.061 0.939 25 H 0.094 0.906 26 H 0.033 0.967 27 H 0.063 0.937 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.082 0.918 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.047 0.953 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.020 0.980 39 H 0.016 0.984 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.200 4.798 -4.705 12.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.331 6.331 3 C 0.052 3.948 4 H 0.080 0.920 5 C -0.170 4.170 6 C -0.147 4.147 7 C -0.152 4.152 8 C -0.144 4.144 9 C -0.113 4.113 10 H 0.098 0.902 11 C 0.315 3.685 12 O -0.478 6.478 13 N -0.336 5.336 14 C -0.049 4.049 15 C 0.117 3.883 16 C -0.647 4.647 17 H 0.064 0.936 18 C -0.215 4.215 19 N -0.564 5.564 20 Si 0.929 3.071 21 H -0.193 1.193 22 H -0.203 1.203 23 H -0.209 1.209 24 H 0.080 0.920 25 H 0.113 0.887 26 H 0.052 0.948 27 H 0.082 0.918 28 H 0.104 0.896 29 H 0.108 0.892 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.101 0.899 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.065 0.935 36 H 0.084 0.916 37 H 0.098 0.902 38 H 0.037 0.963 39 H 0.034 0.966 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.078 5.273 -4.732 11.515 hybrid contribution -1.466 -0.944 0.779 1.910 sum -10.544 4.328 -3.952 12.064 Atomic orbital electron populations 1.22883 0.79700 1.03447 1.00432 1.87850 1.21496 1.28555 1.95216 1.21986 0.92280 0.84446 0.96128 0.91952 1.21999 1.02311 0.97935 0.94740 1.21514 0.95736 0.95678 1.01776 1.21523 0.98182 1.01885 0.93594 1.21491 1.01196 0.92252 0.99416 1.21318 0.98178 1.00115 0.91722 0.90215 1.20765 0.81698 0.76859 0.89214 1.90515 1.30173 1.58854 1.68276 1.48039 1.17599 1.50915 1.17086 1.21553 1.01515 0.98984 0.82895 1.19284 0.80676 0.96255 0.92047 1.22383 1.00913 1.04729 1.36641 0.93572 1.26976 0.99052 1.02836 0.92625 1.70898 1.39006 1.07535 1.38942 0.83045 0.74145 0.72701 0.77209 1.19258 1.20284 1.20916 0.91999 0.88731 0.94820 0.91849 0.89574 0.89160 0.90952 0.92662 0.89949 0.92051 0.91021 0.93460 0.91605 0.90215 0.96252 0.96580 0.93106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 10.82 113.37 1.23 2.05 16 2 O -0.41 -14.53 9.97 -148.98 -1.49 -16.01 16 3 C 0.11 3.68 1.69 30.60 0.05 3.73 16 4 H 0.06 2.13 7.50 -2.38 -0.02 2.11 16 5 C -0.13 -3.46 5.54 30.60 0.17 -3.29 16 6 C -0.11 -2.53 5.92 30.60 0.18 -2.35 16 7 C -0.11 -3.32 5.92 30.59 0.18 -3.14 16 8 C -0.11 -3.86 5.18 30.59 0.16 -3.70 16 9 C -0.09 -3.66 1.71 -11.54 -0.02 -3.68 16 10 H 0.08 3.49 5.84 -2.39 -0.01 3.48 16 11 C 0.52 23.75 6.28 87.66 0.55 24.30 16 12 O -0.60 -28.52 15.96 -3.03 -0.05 -28.57 16 13 N -0.61 -27.69 2.87 -851.16 -2.45 -30.14 16 14 C 0.09 3.65 10.39 127.77 1.33 4.97 16 15 C 0.24 11.77 4.31 85.63 0.37 12.14 16 16 C -0.61 -31.86 7.56 25.60 0.19 -31.66 16 17 H 0.05 2.49 7.35 -2.91 -0.02 2.47 16 18 C -0.01 -0.78 5.46 84.66 0.46 -0.32 16 19 N -0.93 -52.60 13.65 21.45 0.29 -52.30 16 20 Si 1.11 47.32 29.90 68.60 2.05 49.37 16 21 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 22 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 23 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 24 H 0.06 1.28 7.87 -2.38 -0.02 1.26 16 25 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 26 H 0.03 0.93 8.08 -2.39 -0.02 0.91 16 27 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.09 1.83 7.87 -2.38 -0.02 1.81 16 29 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 32 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.07 3.05 5.71 -2.38 -0.01 3.04 16 35 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.07 2.46 7.64 -2.39 -0.02 2.44 16 37 H 0.08 2.81 7.79 -2.38 -0.02 2.79 16 38 H 0.02 1.01 5.80 -2.39 -0.01 1.00 16 39 H 0.02 0.82 7.64 -2.38 -0.02 0.81 16 40 H 0.26 14.80 7.22 -92.70 -0.67 14.13 16 Total: -1.00 -63.87 315.91 4.32 -59.55 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: 1.10 Total: 19.05 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: 4.85 Total: -0.95 kcal Atomic # 7 Polarization: -80.29 SS G_CDS: -2.15 Total: -82.44 kcal Atomic # 8 Polarization: -43.05 SS G_CDS: -1.53 Total: -44.58 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 2.05 Total: 49.37 kcal Total: -63.87 4.32 -59.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339124243.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.203 kcal (2) G-P(sol) polarization free energy of solvation -63.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds