Wall clock time and date at job start Mon Mar 30 2020 04:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.47024 * 2 1 4 4 C 1.37098 * 119.99927 * 263.88048 * 3 2 1 5 5 H 1.08003 * 120.00056 * 191.05117 * 4 3 2 6 6 C 1.38949 * 119.99861 * 11.05323 * 4 3 2 7 7 N 1.31412 * 120.00300 * 18.84696 * 6 4 3 8 8 Si 1.86797 * 119.99741 * 198.84804 * 6 4 3 9 9 H 1.48501 * 109.47489 * 60.00120 * 8 6 4 10 10 H 1.48501 * 109.47133 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47395 * 299.99553 * 8 6 4 12 12 C 1.34777 * 119.99911 * 83.87985 * 3 2 1 13 13 O 1.21289 * 119.99773 * 5.72569 * 12 3 2 14 14 C 1.50698 * 119.99890 * 185.71474 * 12 3 2 15 15 H 1.09004 * 109.47072 * 42.25241 * 14 12 3 16 16 C 1.52997 * 109.47330 * 282.25265 * 14 12 3 17 17 C 1.53007 * 109.46964 * 179.97438 * 16 14 12 18 18 C 1.52998 * 109.46922 * 60.00107 * 17 16 14 19 19 C 1.52997 * 109.47213 * 299.99740 * 18 17 16 20 20 C 1.52999 * 109.47081 * 162.24934 * 14 12 3 21 21 H 1.09008 * 109.47035 * 60.00716 * 20 14 12 22 22 O 1.42895 * 109.47570 * 300.00554 * 20 14 12 23 23 C 1.42897 * 114.00130 * 149.99598 * 22 20 14 24 24 H 1.09002 * 109.46808 * 53.24489 * 1 2 3 25 25 H 1.09003 * 109.47503 * 173.24182 * 1 2 3 26 26 H 1.08999 * 109.47647 * 293.24428 * 1 2 3 27 27 H 1.09004 * 109.47044 * 239.99555 * 2 1 3 28 28 H 1.09003 * 109.46687 * 120.00047 * 2 1 3 29 29 H 0.96996 * 120.00017 * 180.02562 * 7 6 4 30 30 H 1.08997 * 109.47320 * 60.00101 * 16 14 12 31 31 H 1.08993 * 109.47431 * 300.00085 * 16 14 12 32 32 H 1.08995 * 109.47111 * 299.99798 * 17 16 14 33 33 H 1.09006 * 109.46994 * 180.02562 * 17 16 14 34 34 H 1.09001 * 109.46935 * 179.97438 * 18 17 16 35 35 H 1.08996 * 109.47126 * 60.00609 * 18 17 16 36 36 H 1.09004 * 109.47023 * 300.00186 * 19 18 17 37 37 H 1.09000 * 109.46838 * 180.02562 * 19 18 17 38 38 H 1.09008 * 109.47007 * 179.97438 * 23 22 20 39 39 H 1.08995 * 109.47572 * 299.99760 * 23 22 20 40 40 H 1.08999 * 109.47247 * 60.00612 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3661 1.9853 -1.1805 5 1 2.8900 2.9297 -1.1701 6 6 2.0445 1.3826 -2.3905 7 7 1.1116 0.4582 -2.4367 8 14 2.9384 1.8862 -3.9515 9 1 4.3920 1.6251 -3.7958 10 1 2.4139 1.1010 -5.0976 11 1 2.7195 3.3334 -4.2023 12 6 2.1256 2.0580 1.1606 13 8 1.9179 1.4930 2.2135 14 6 2.5039 3.5167 1.1499 15 1 1.9675 4.0254 0.3488 16 6 4.0105 3.6513 0.9205 17 6 4.3944 5.1323 0.9090 18 6 4.0245 5.7654 2.2519 19 6 2.5178 5.6309 2.4814 20 6 2.1340 4.1493 2.4930 21 1 2.6705 3.6407 3.2942 22 8 0.7268 4.0236 2.7074 23 6 0.3547 3.9300 4.0839 24 1 -0.3633 0.6150 -0.8234 25 1 -0.3634 -1.0205 -0.1209 26 1 -0.3634 0.4056 0.9442 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 0.8874 0.0373 -3.2813 30 1 4.2740 3.2007 -0.0364 31 1 4.5469 3.1427 1.7215 32 1 3.8581 5.6405 0.1077 33 1 5.4678 5.2282 0.7451 34 1 4.2984 6.8204 2.2439 35 1 4.5610 5.2573 3.0532 36 1 1.9815 6.1391 1.6800 37 1 2.2543 6.0823 3.4379 38 1 -0.7287 3.8377 4.1619 39 1 0.8272 3.0546 4.5294 40 1 0.6813 4.8267 4.6104 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339133648.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:57 Heat of formation + Delta-G solvation = -87.631470 kcal Electronic energy + Delta-G solvation = -20757.088430 eV Core-core repulsion = 17764.810905 eV Total energy + Delta-G solvation = -2992.277525 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.51889 -37.54851 -35.85221 -34.83826 -31.44358 -31.04397 -29.56909 -29.04429 -25.99459 -24.78514 -23.28153 -21.98652 -21.25529 -19.57156 -18.88564 -17.05353 -16.16843 -15.84968 -14.93636 -14.67830 -14.32365 -14.10979 -14.04041 -13.48345 -13.26519 -12.99657 -12.68488 -12.28985 -12.10906 -11.89687 -11.53128 -11.27995 -11.19035 -11.00692 -10.89101 -10.70169 -10.54744 -10.49640 -10.37431 -10.17041 -10.00019 -9.83658 -9.62785 -8.97325 -8.79786 -8.14087 -7.66880 -6.28166 -3.80021 3.13688 3.22407 3.23328 4.00279 4.11325 4.27735 4.79182 5.05486 5.11763 5.21955 5.27810 5.57719 5.59943 5.74560 5.76409 5.85490 5.87843 5.90941 5.96791 6.08064 6.12736 6.32861 6.37839 6.46705 6.48414 6.50797 6.69826 6.73588 6.84631 6.89848 6.96666 7.14780 7.41852 7.53646 7.79695 7.84344 7.88515 8.53076 9.15402 9.66714 10.07351 10.69321 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.020251 B = 0.008722 C = 0.006687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.338177 B = 3209.545586 C = 4186.142441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.135 3.865 3 N -0.443 5.443 4 C -0.331 4.331 5 H 0.102 0.898 6 C 0.032 3.968 7 N -0.861 5.861 8 Si 0.916 3.084 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.274 1.274 12 C 0.468 3.532 13 O -0.608 6.608 14 C -0.086 4.086 15 H 0.092 0.908 16 C -0.110 4.110 17 C -0.119 4.119 18 C -0.115 4.115 19 C -0.140 4.140 20 C 0.113 3.887 21 H 0.062 0.938 22 O -0.374 6.374 23 C 0.040 3.960 24 H 0.081 0.919 25 H 0.032 0.968 26 H 0.023 0.977 27 H 0.096 0.904 28 H 0.032 0.968 29 H 0.266 0.734 30 H 0.085 0.915 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.076 0.924 39 H 0.043 0.957 40 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.731 7.583 5.076 9.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.012 3.988 3 N -0.160 5.160 4 C -0.458 4.458 5 H 0.119 0.881 6 C -0.171 4.171 7 N -0.500 5.500 8 Si 0.742 3.258 9 H -0.200 1.200 10 H -0.210 1.210 11 H -0.199 1.199 12 C 0.257 3.743 13 O -0.495 6.495 14 C -0.107 4.107 15 H 0.111 0.889 16 C -0.147 4.147 17 C -0.157 4.157 18 C -0.153 4.153 19 C -0.178 4.178 20 C 0.055 3.945 21 H 0.080 0.920 22 O -0.292 6.292 23 C -0.057 4.057 24 H 0.099 0.901 25 H 0.051 0.949 26 H 0.042 0.958 27 H 0.114 0.886 28 H 0.051 0.949 29 H 0.077 0.923 30 H 0.104 0.896 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.076 0.924 38 H 0.094 0.906 39 H 0.062 0.938 40 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 3.390 7.136 5.248 9.484 hybrid contribution 0.406 0.249 -0.721 0.864 sum 3.796 7.385 4.527 9.457 Atomic orbital electron populations 1.21901 0.97016 0.99880 1.00433 1.21191 0.94219 0.83346 1.00019 1.43777 1.55596 1.11362 1.05295 1.19736 1.35752 1.07447 0.82890 0.88066 1.25208 0.95700 0.97104 0.99137 1.70157 1.26434 1.26811 1.26615 0.86174 0.79863 0.78666 0.81050 1.19990 1.20968 1.19925 1.19800 0.82785 0.87843 0.83893 1.90474 1.57517 1.70208 1.31323 1.21098 0.96810 0.95525 0.97299 0.88947 1.21523 0.93989 0.95905 1.03332 1.21580 1.00620 0.96245 0.97260 1.21487 0.95558 1.00202 0.98015 1.22072 0.96349 0.97603 1.01808 1.21842 0.82026 0.93219 0.97432 0.91974 1.87910 1.22980 1.94086 1.24207 1.22623 1.00443 0.99089 0.83578 0.90061 0.94884 0.95830 0.88564 0.94943 0.92285 0.89623 0.92217 0.91699 0.92051 0.92173 0.92168 0.91251 0.92351 0.90579 0.93802 0.95315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.28 9.52 37.16 0.35 -2.93 16 2 C 0.14 3.45 5.29 -4.04 -0.02 3.43 16 3 N -0.44 -11.43 2.64 -114.81 -0.30 -11.74 16 4 C -0.33 -8.31 8.57 -14.93 -0.13 -8.44 16 5 H 0.10 2.38 4.94 -52.48 -0.26 2.12 16 6 C 0.03 0.81 5.03 -17.47 -0.09 0.72 16 7 N -0.86 -22.07 8.39 55.50 0.47 -21.60 16 8 Si 0.92 19.28 29.59 -169.99 -5.03 14.25 16 9 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 10 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 11 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 12 C 0.47 11.69 6.51 -10.99 -0.07 11.62 16 13 O -0.61 -16.51 15.39 -2.67 -0.04 -16.55 16 14 C -0.09 -1.76 1.42 -91.77 -0.13 -1.89 16 15 H 0.09 1.99 7.34 -51.93 -0.38 1.61 16 16 C -0.11 -1.91 4.89 -26.73 -0.13 -2.04 16 17 C -0.12 -1.65 5.92 -26.73 -0.16 -1.81 16 18 C -0.12 -1.47 5.92 -26.73 -0.16 -1.63 16 19 C -0.14 -2.06 5.54 -26.71 -0.15 -2.20 16 20 C 0.11 2.10 1.58 -26.71 -0.04 2.06 16 21 H 0.06 1.19 7.56 -51.92 -0.39 0.80 16 22 O -0.37 -7.55 9.70 -43.45 -0.42 -7.97 16 23 C 0.04 0.64 10.82 101.05 1.09 1.73 16 24 H 0.08 2.14 6.56 -51.93 -0.34 1.80 16 25 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.10 2.51 5.83 -51.93 -0.30 2.21 16 28 H 0.03 0.83 7.54 -51.93 -0.39 0.44 16 29 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 30 H 0.09 1.59 6.12 -51.93 -0.32 1.27 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.06 0.77 7.88 -51.93 -0.41 0.36 16 38 H 0.08 1.10 8.14 -51.92 -0.42 0.68 16 39 H 0.04 0.74 8.08 -51.93 -0.42 0.32 16 40 H 0.03 0.38 7.88 -51.93 -0.41 -0.02 16 LS Contribution 309.36 15.07 4.66 4.66 Total: -1.00 -28.95 309.36 -6.86 -35.81 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -6.56 Total: 4.55 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: 0.37 Total: -1.40 kcal Atomic # 7 Polarization: -33.50 SS G_CDS: 0.16 Total: -33.34 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: -0.46 Total: -24.53 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.03 Total: 14.25 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.95 -6.86 -35.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339133648.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.825 kcal (2) G-P(sol) polarization free energy of solvation -28.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds