Wall clock time and date at job start Mon Mar 30 2020 04:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.47024 * 2 1 4 4 C 1.37098 * 119.99927 * 263.88048 * 3 2 1 5 5 H 1.08003 * 120.00056 * 191.05117 * 4 3 2 6 6 C 1.38949 * 119.99861 * 11.05323 * 4 3 2 7 7 N 1.31412 * 120.00300 * 18.84696 * 6 4 3 8 8 Si 1.86797 * 119.99741 * 198.84804 * 6 4 3 9 9 H 1.48501 * 109.47489 * 60.00120 * 8 6 4 10 10 H 1.48501 * 109.47133 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47395 * 299.99553 * 8 6 4 12 12 C 1.34777 * 119.99911 * 83.87985 * 3 2 1 13 13 O 1.21289 * 119.99773 * 5.72569 * 12 3 2 14 14 C 1.50698 * 119.99890 * 185.71474 * 12 3 2 15 15 H 1.09004 * 109.47072 * 42.25241 * 14 12 3 16 16 C 1.52997 * 109.47330 * 282.25265 * 14 12 3 17 17 C 1.53007 * 109.46964 * 179.97438 * 16 14 12 18 18 C 1.52998 * 109.46922 * 60.00107 * 17 16 14 19 19 C 1.52997 * 109.47213 * 299.99740 * 18 17 16 20 20 C 1.52999 * 109.47081 * 162.24934 * 14 12 3 21 21 H 1.09008 * 109.47035 * 60.00716 * 20 14 12 22 22 O 1.42895 * 109.47570 * 300.00554 * 20 14 12 23 23 C 1.42897 * 114.00130 * 149.99598 * 22 20 14 24 24 H 1.09002 * 109.46808 * 53.24489 * 1 2 3 25 25 H 1.09003 * 109.47503 * 173.24182 * 1 2 3 26 26 H 1.08999 * 109.47647 * 293.24428 * 1 2 3 27 27 H 1.09004 * 109.47044 * 239.99555 * 2 1 3 28 28 H 1.09003 * 109.46687 * 120.00047 * 2 1 3 29 29 H 0.96996 * 120.00017 * 180.02562 * 7 6 4 30 30 H 1.08997 * 109.47320 * 60.00101 * 16 14 12 31 31 H 1.08993 * 109.47431 * 300.00085 * 16 14 12 32 32 H 1.08995 * 109.47111 * 299.99798 * 17 16 14 33 33 H 1.09006 * 109.46994 * 180.02562 * 17 16 14 34 34 H 1.09001 * 109.46935 * 179.97438 * 18 17 16 35 35 H 1.08996 * 109.47126 * 60.00609 * 18 17 16 36 36 H 1.09004 * 109.47023 * 300.00186 * 19 18 17 37 37 H 1.09000 * 109.46838 * 180.02562 * 19 18 17 38 38 H 1.09008 * 109.47007 * 179.97438 * 23 22 20 39 39 H 1.08995 * 109.47572 * 299.99760 * 23 22 20 40 40 H 1.08999 * 109.47247 * 60.00612 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3661 1.9853 -1.1805 5 1 2.8900 2.9297 -1.1701 6 6 2.0445 1.3826 -2.3905 7 7 1.1116 0.4582 -2.4367 8 14 2.9384 1.8862 -3.9515 9 1 4.3920 1.6251 -3.7958 10 1 2.4139 1.1010 -5.0976 11 1 2.7195 3.3334 -4.2023 12 6 2.1256 2.0580 1.1606 13 8 1.9179 1.4930 2.2135 14 6 2.5039 3.5167 1.1499 15 1 1.9675 4.0254 0.3488 16 6 4.0105 3.6513 0.9205 17 6 4.3944 5.1323 0.9090 18 6 4.0245 5.7654 2.2519 19 6 2.5178 5.6309 2.4814 20 6 2.1340 4.1493 2.4930 21 1 2.6705 3.6407 3.2942 22 8 0.7268 4.0236 2.7074 23 6 0.3547 3.9300 4.0839 24 1 -0.3633 0.6150 -0.8234 25 1 -0.3634 -1.0205 -0.1209 26 1 -0.3634 0.4056 0.9442 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 0.8874 0.0373 -3.2813 30 1 4.2740 3.2007 -0.0364 31 1 4.5469 3.1427 1.7215 32 1 3.8581 5.6405 0.1077 33 1 5.4678 5.2282 0.7451 34 1 4.2984 6.8204 2.2439 35 1 4.5610 5.2573 3.0532 36 1 1.9815 6.1391 1.6800 37 1 2.2543 6.0823 3.4379 38 1 -0.7287 3.8377 4.1619 39 1 0.8272 3.0546 4.5294 40 1 0.6813 4.8267 4.6104 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339133648.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:57 Heat of formation + Delta-G solvation = -103.989489 kcal Electronic energy + Delta-G solvation = -20757.797767 eV Core-core repulsion = 17764.810905 eV Total energy + Delta-G solvation = -2992.986862 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.17240 -39.23084 -37.20305 -36.82587 -33.39699 -32.66343 -30.92041 -30.76161 -27.32532 -26.72811 -24.94604 -23.41206 -22.84394 -21.02851 -20.66268 -18.86034 -17.90228 -17.42809 -16.50449 -16.23555 -15.97861 -15.79532 -15.62568 -14.98160 -14.68746 -14.42351 -14.31016 -14.08045 -13.69274 -13.54253 -13.13258 -12.91937 -12.76113 -12.59768 -12.54312 -12.26644 -12.15105 -12.04867 -11.81847 -11.68675 -11.60564 -11.39848 -11.19295 -10.79610 -10.37541 -10.02826 -9.67283 -8.19743 -5.78366 1.46194 1.50962 1.59369 2.11092 2.33982 2.89702 3.04733 3.20248 3.80391 3.92275 4.11068 4.26904 4.32529 4.38197 4.42527 4.49920 4.54288 4.59647 4.61303 4.66709 4.81915 4.83752 4.92570 4.98092 5.02615 5.10715 5.16686 5.20268 5.26867 5.30916 5.32636 5.44930 5.54468 5.55946 5.79157 5.91236 6.41629 6.55775 7.19987 7.70258 8.11224 8.78557 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.020251 B = 0.008722 C = 0.006687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.338177 B = 3209.545586 C = 4186.142441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.136 3.864 3 N -0.455 5.455 4 C -0.351 4.351 5 H 0.114 0.886 6 C -0.009 4.009 7 N -0.885 5.885 8 Si 0.985 3.015 9 H -0.268 1.268 10 H -0.285 1.285 11 H -0.265 1.265 12 C 0.453 3.547 13 O -0.640 6.640 14 C -0.081 4.081 15 H 0.078 0.922 16 C -0.104 4.104 17 C -0.114 4.114 18 C -0.111 4.111 19 C -0.132 4.132 20 C 0.113 3.887 21 H 0.049 0.951 22 O -0.408 6.408 23 C 0.037 3.963 24 H 0.062 0.938 25 H 0.054 0.946 26 H 0.009 0.991 27 H 0.090 0.910 28 H 0.023 0.977 29 H 0.268 0.732 30 H 0.071 0.929 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.026 0.974 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.976 9.720 4.704 11.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.012 3.988 3 N -0.172 5.172 4 C -0.478 4.478 5 H 0.131 0.869 6 C -0.210 4.210 7 N -0.524 5.524 8 Si 0.809 3.191 9 H -0.194 1.194 10 H -0.211 1.211 11 H -0.190 1.190 12 C 0.243 3.757 13 O -0.529 6.529 14 C -0.102 4.102 15 H 0.097 0.903 16 C -0.142 4.142 17 C -0.151 4.151 18 C -0.148 4.148 19 C -0.170 4.170 20 C 0.055 3.945 21 H 0.067 0.933 22 O -0.328 6.328 23 C -0.059 4.059 24 H 0.081 0.919 25 H 0.073 0.927 26 H 0.028 0.972 27 H 0.108 0.892 28 H 0.041 0.959 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.105 0.895 34 H 0.110 0.890 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.106 0.894 39 H 0.045 0.955 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.639 9.284 4.880 11.469 hybrid contribution -0.048 -0.504 -0.570 0.763 sum 4.590 8.780 4.309 10.805 Atomic orbital electron populations 1.21713 0.96346 1.00725 0.98714 1.21134 0.94718 0.83845 0.99066 1.44040 1.55656 1.11438 1.06096 1.20120 1.36472 1.08299 0.82915 0.86851 1.26077 0.95962 0.97059 1.01949 1.70255 1.27147 1.27572 1.27439 0.85102 0.78607 0.78571 0.76792 1.19358 1.21091 1.18973 1.20675 0.82169 0.89703 0.83173 1.90433 1.58810 1.71381 1.32247 1.21121 0.98754 0.92034 0.98311 0.90335 1.21493 0.91565 0.98943 1.02249 1.21572 1.02202 0.93082 0.98261 1.21506 0.93920 1.02097 0.97289 1.22020 0.97836 0.94216 1.02901 1.21929 0.81341 0.95754 0.95511 0.93257 1.87850 1.23968 1.94448 1.26514 1.22768 1.01186 0.99884 0.82096 0.91865 0.92680 0.97194 0.89237 0.95865 0.92166 0.91079 0.92654 0.91434 0.89549 0.89004 0.91662 0.91403 0.90370 0.89366 0.95500 0.92069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.86 9.52 71.98 0.69 -5.18 16 2 C 0.14 7.13 5.29 86.38 0.46 7.59 16 3 N -0.45 -24.13 2.64 -635.53 -1.68 -25.81 16 4 C -0.35 -17.81 8.57 84.04 0.72 -17.09 16 5 H 0.11 5.33 4.94 -2.91 -0.01 5.32 16 6 C -0.01 -0.44 5.03 84.93 0.43 -0.01 16 7 N -0.89 -45.67 8.39 21.66 0.18 -45.49 16 8 Si 0.99 38.96 29.59 68.60 2.03 40.99 16 9 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 10 H -0.29 -11.27 7.11 99.48 0.71 -10.56 16 11 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 12 C 0.45 23.26 6.51 87.66 0.57 23.84 16 13 O -0.64 -36.00 15.39 4.81 0.07 -35.92 16 14 C -0.08 -3.34 1.42 -11.54 -0.02 -3.36 16 15 H 0.08 3.43 7.34 -2.38 -0.02 3.41 16 16 C -0.10 -3.56 4.89 30.60 0.15 -3.41 16 17 C -0.11 -2.81 5.92 30.60 0.18 -2.63 16 18 C -0.11 -2.42 5.92 30.59 0.18 -2.24 16 19 C -0.13 -3.52 5.54 30.61 0.17 -3.35 16 20 C 0.11 4.13 1.58 30.61 0.05 4.17 16 21 H 0.05 1.90 7.56 -2.38 -0.02 1.88 16 22 O -0.41 -16.56 9.70 -141.12 -1.37 -17.93 16 23 C 0.04 1.17 10.82 113.37 1.23 2.40 16 24 H 0.06 3.40 6.56 -2.39 -0.02 3.38 16 25 H 0.05 2.44 8.14 -2.39 -0.02 2.42 16 26 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.09 4.80 5.83 -2.38 -0.01 4.79 16 28 H 0.02 1.23 7.54 -2.39 -0.02 1.21 16 29 H 0.27 13.14 8.31 -92.71 -0.77 12.37 16 30 H 0.07 2.60 6.12 -2.39 -0.01 2.59 16 31 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 34 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 37 H 0.08 1.79 7.88 -2.39 -0.02 1.77 16 38 H 0.09 2.52 8.14 -2.38 -0.02 2.50 16 39 H 0.03 0.92 8.08 -2.39 -0.02 0.90 16 40 H 0.06 1.52 7.88 -2.39 -0.02 1.50 16 Total: -1.00 -63.58 309.36 5.05 -58.53 By element: Atomic # 1 Polarization: 23.90 SS G_CDS: 1.01 Total: 24.90 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: 4.80 Total: 0.73 kcal Atomic # 7 Polarization: -69.81 SS G_CDS: -1.50 Total: -71.30 kcal Atomic # 8 Polarization: -52.56 SS G_CDS: -1.29 Total: -53.86 kcal Atomic # 14 Polarization: 38.96 SS G_CDS: 2.03 Total: 40.99 kcal Total: -63.58 5.05 -58.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339133648.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.458 kcal (2) G-P(sol) polarization free energy of solvation -63.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds