Wall clock time and date at job start Mon Mar 30 2020 04:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47618 * 2 1 4 4 C 1.37102 * 119.99711 * 267.67378 * 3 2 1 5 5 H 1.08000 * 119.99939 * 185.63090 * 4 3 2 6 6 C 1.38953 * 119.99821 * 5.62173 * 4 3 2 7 7 N 1.31402 * 120.00046 * 25.34245 * 6 4 3 8 8 Si 1.86803 * 119.99619 * 205.33512 * 6 4 3 9 9 H 1.48499 * 109.47270 * 60.00430 * 8 6 4 10 10 H 1.48504 * 109.46876 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47140 * 300.00283 * 8 6 4 12 12 C 1.34773 * 120.00238 * 87.66825 * 3 2 1 13 13 O 1.21288 * 120.00060 * 3.91055 * 12 3 2 14 14 C 1.50704 * 120.00127 * 183.91725 * 12 3 2 15 15 H 1.09004 * 109.46722 * 32.07643 * 14 12 3 16 16 C 1.52998 * 109.46971 * 272.07944 * 14 12 3 17 17 C 1.53002 * 109.47104 * 179.97438 * 16 14 12 18 18 C 1.52997 * 109.46935 * 60.00159 * 17 16 14 19 19 C 1.53007 * 109.46890 * 299.99905 * 18 17 16 20 20 C 1.52994 * 109.47456 * 60.00145 * 19 18 17 21 21 H 1.08991 * 109.47291 * 179.97438 * 20 19 18 22 22 O 1.42903 * 109.46704 * 59.99792 * 20 19 18 23 23 C 1.42897 * 113.99993 * 90.00748 * 22 20 19 24 24 H 1.08998 * 109.47187 * 53.37404 * 1 2 3 25 25 H 1.08998 * 109.47228 * 173.37357 * 1 2 3 26 26 H 1.08999 * 109.46939 * 293.37893 * 1 2 3 27 27 H 1.08997 * 109.47049 * 239.99521 * 2 1 3 28 28 H 1.09006 * 109.47278 * 120.00039 * 2 1 3 29 29 H 0.96999 * 119.99763 * 179.97438 * 7 6 4 30 30 H 1.09000 * 109.47051 * 59.99526 * 16 14 12 31 31 H 1.08995 * 109.47128 * 300.00071 * 16 14 12 32 32 H 1.08999 * 109.46899 * 300.00329 * 17 16 14 33 33 H 1.09002 * 109.46829 * 179.97438 * 17 16 14 34 34 H 1.09000 * 109.47581 * 59.99678 * 18 17 16 35 35 H 1.09004 * 109.47294 * 180.02562 * 18 17 16 36 36 H 1.09000 * 109.46847 * 180.02562 * 19 18 17 37 37 H 1.09003 * 109.47176 * 299.99576 * 19 18 17 38 38 H 1.08998 * 109.47190 * 179.97438 * 23 22 20 39 39 H 1.09006 * 109.46764 * 299.99475 * 23 22 20 40 40 H 1.08995 * 109.47967 * 59.99469 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2924 2.0113 -1.1864 5 1 2.7377 2.9952 -1.1850 6 6 1.9973 1.3840 -2.3906 7 7 1.0506 0.4742 -2.4428 8 14 2.9463 1.8341 -3.9353 9 1 4.3899 1.5534 -3.7289 10 1 2.4434 1.0292 -5.0775 11 1 2.7598 3.2781 -4.2278 12 6 2.1984 2.0324 1.1662 13 8 2.0241 1.4530 2.2174 14 6 2.6159 3.4804 1.1640 15 1 2.1972 3.9779 0.2892 16 6 4.1426 3.5708 1.1203 17 6 4.5665 5.0410 1.1175 18 6 4.0514 5.7226 2.3866 19 6 2.5246 5.6322 2.4304 20 6 2.1007 4.1621 2.4331 21 1 1.0131 4.0977 2.4647 22 8 2.6496 3.5103 3.5803 23 6 1.8059 3.5541 4.7328 24 1 -0.3633 0.6131 -0.8247 25 1 -0.3633 -1.0208 -0.1186 26 1 -0.3633 0.4078 0.9433 27 1 1.8933 -0.5139 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 0.8443 0.0366 -3.2835 30 1 4.5095 3.0855 0.2159 31 1 4.5612 3.0733 1.9950 32 1 4.1478 5.5381 0.2425 33 1 5.6542 5.1053 1.0868 34 1 4.4700 5.2255 3.2617 35 1 4.3530 6.7701 2.3845 36 1 2.1576 6.1182 3.3343 37 1 2.1060 6.1294 1.5554 38 1 2.2934 3.0377 5.5597 39 1 1.6228 4.5923 5.0098 40 1 0.8580 3.0653 4.5081 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339133649.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:00 Heat of formation + Delta-G solvation = -83.927201 kcal Electronic energy + Delta-G solvation = -20796.013372 eV Core-core repulsion = 17803.896476 eV Total energy + Delta-G solvation = -2992.116896 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.52723 -37.60587 -35.39433 -34.81627 -31.45452 -30.96479 -29.68820 -29.07929 -25.99071 -24.76616 -23.29338 -22.04749 -21.33892 -19.29115 -18.84900 -16.93448 -16.04758 -15.75454 -15.03964 -14.77094 -14.32926 -14.06102 -13.97685 -13.50739 -13.11898 -12.97205 -12.47308 -12.21168 -12.02507 -11.85160 -11.55213 -11.49518 -11.16151 -11.00031 -10.90919 -10.77279 -10.51155 -10.43193 -10.32940 -10.15254 -10.03432 -9.62393 -9.55584 -8.94990 -8.78508 -8.03825 -7.71707 -6.34220 -3.77329 3.12815 3.22517 3.24794 3.97509 4.11056 4.43270 4.80122 5.04651 5.13174 5.24271 5.31116 5.63276 5.66354 5.75817 5.80399 5.87753 5.95018 6.01484 6.04493 6.11585 6.20081 6.28387 6.40717 6.49329 6.55525 6.59428 6.72036 6.79613 6.85207 6.91478 6.98211 7.10985 7.39759 7.48070 7.80448 7.84834 7.85831 8.50942 9.15084 9.67122 10.08667 10.64326 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.022446 B = 0.008296 C = 0.006486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.138927 B = 3374.312092 C = 4315.628619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.135 3.865 3 N -0.445 5.445 4 C -0.335 4.335 5 H 0.100 0.900 6 C 0.036 3.964 7 N -0.855 5.855 8 Si 0.910 3.090 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.460 3.540 13 O -0.593 6.593 14 C -0.087 4.087 15 H 0.095 0.905 16 C -0.100 4.100 17 C -0.116 4.116 18 C -0.111 4.111 19 C -0.140 4.140 20 C 0.111 3.889 21 H 0.053 0.947 22 O -0.354 6.354 23 C 0.041 3.959 24 H 0.085 0.915 25 H 0.033 0.967 26 H 0.019 0.981 27 H 0.090 0.910 28 H 0.037 0.963 29 H 0.267 0.733 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.052 0.948 36 H 0.057 0.943 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.025 0.975 40 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.527 7.716 4.883 9.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.012 3.988 3 N -0.164 5.164 4 C -0.462 4.462 5 H 0.118 0.882 6 C -0.168 4.168 7 N -0.493 5.493 8 Si 0.736 3.264 9 H -0.200 1.200 10 H -0.210 1.210 11 H -0.200 1.200 12 C 0.248 3.752 13 O -0.479 6.479 14 C -0.109 4.109 15 H 0.113 0.887 16 C -0.138 4.138 17 C -0.154 4.154 18 C -0.149 4.149 19 C -0.178 4.178 20 C 0.053 3.947 21 H 0.071 0.929 22 O -0.272 6.272 23 C -0.056 4.056 24 H 0.104 0.896 25 H 0.052 0.948 26 H 0.039 0.961 27 H 0.108 0.892 28 H 0.055 0.945 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.043 0.957 40 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 2.513 7.173 5.219 9.220 hybrid contribution -0.010 0.337 -0.986 1.042 sum 2.503 7.510 4.233 8.976 Atomic orbital electron populations 1.21946 0.97004 1.00076 1.00353 1.21154 0.94194 0.83428 1.00013 1.43864 1.56162 1.11541 1.04834 1.19622 1.40392 1.03420 0.82746 0.88204 1.25139 0.95607 0.97058 0.99028 1.70207 1.25072 1.27092 1.26969 0.86271 0.80496 0.78566 0.81030 1.19970 1.21034 1.19965 1.19860 0.83416 0.88203 0.83738 1.90530 1.57561 1.68613 1.31171 1.21211 0.97373 0.95551 0.96722 0.88738 1.21312 0.94029 0.95791 1.02709 1.21534 0.99902 0.96350 0.97589 1.21405 0.95219 0.99327 0.98916 1.22048 0.97140 0.97071 1.01547 1.21784 0.96409 0.90135 0.86408 0.92910 1.87984 1.42920 1.77274 1.18979 1.22570 0.95396 0.98567 0.89081 0.89628 0.94838 0.96150 0.89186 0.94495 0.92257 0.91247 0.91329 0.92247 0.92377 0.91419 0.92938 0.92388 0.91336 0.90666 0.95670 0.94378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 9.54 37.16 0.35 -2.87 16 2 C 0.14 3.40 5.34 -4.04 -0.02 3.38 16 3 N -0.45 -11.35 2.63 -114.81 -0.30 -11.65 16 4 C -0.33 -8.35 8.89 -14.93 -0.13 -8.48 16 5 H 0.10 2.35 5.65 -52.49 -0.30 2.06 16 6 C 0.04 0.89 4.94 -17.47 -0.09 0.81 16 7 N -0.86 -21.60 8.42 55.50 0.47 -21.13 16 8 Si 0.91 19.18 29.62 -169.99 -5.04 14.15 16 9 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 10 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 11 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 12 C 0.46 11.31 6.69 -10.99 -0.07 11.24 16 13 O -0.59 -15.97 14.69 -15.63 -0.23 -16.20 16 14 C -0.09 -1.76 1.51 -91.77 -0.14 -1.90 16 15 H 0.09 1.90 6.56 -51.93 -0.34 1.56 16 16 C -0.10 -1.84 4.90 -26.73 -0.13 -1.97 16 17 C -0.12 -1.70 5.92 -26.73 -0.16 -1.86 16 18 C -0.11 -1.53 5.78 -26.73 -0.15 -1.68 16 19 C -0.14 -2.02 5.63 -26.73 -0.15 -2.17 16 20 C 0.11 2.02 2.18 -26.74 -0.06 1.96 16 21 H 0.05 0.99 7.78 -51.93 -0.40 0.58 16 22 O -0.35 -6.79 7.41 -56.41 -0.42 -7.21 16 23 C 0.04 0.65 10.82 101.05 1.09 1.74 16 24 H 0.09 2.18 6.42 -51.93 -0.33 1.85 16 25 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.09 2.33 5.92 -51.93 -0.31 2.02 16 28 H 0.04 0.94 7.44 -51.93 -0.39 0.55 16 29 H 0.27 6.44 8.31 -40.82 -0.34 6.10 16 30 H 0.07 1.33 7.55 -51.93 -0.39 0.94 16 31 H 0.07 1.35 7.68 -51.93 -0.40 0.95 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.99 7.68 -51.93 -0.40 0.59 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.75 7.87 -51.93 -0.41 0.34 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.02 0.33 7.87 -51.93 -0.41 -0.08 16 40 H 0.04 0.63 8.08 -51.93 -0.42 0.21 16 LS Contribution 308.05 15.07 4.64 4.64 Total: -1.00 -28.30 308.05 -7.12 -35.42 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -6.59 Total: 3.79 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: 0.34 Total: -1.81 kcal Atomic # 7 Polarization: -32.95 SS G_CDS: 0.17 Total: -32.78 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -0.65 Total: -23.41 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.04 Total: 14.15 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.30 -7.12 -35.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339133649.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.506 kcal (2) G-P(sol) polarization free energy of solvation -28.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds