Wall clock time and date at job start Mon Mar 30 2020 04:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47618 * 2 1 4 4 C 1.37102 * 119.99711 * 267.67378 * 3 2 1 5 5 H 1.08000 * 119.99939 * 185.63090 * 4 3 2 6 6 C 1.38953 * 119.99821 * 5.62173 * 4 3 2 7 7 N 1.31402 * 120.00046 * 25.34245 * 6 4 3 8 8 Si 1.86803 * 119.99619 * 205.33512 * 6 4 3 9 9 H 1.48499 * 109.47270 * 60.00430 * 8 6 4 10 10 H 1.48504 * 109.46876 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47140 * 300.00283 * 8 6 4 12 12 C 1.34773 * 120.00238 * 87.66825 * 3 2 1 13 13 O 1.21288 * 120.00060 * 3.91055 * 12 3 2 14 14 C 1.50704 * 120.00127 * 183.91725 * 12 3 2 15 15 H 1.09004 * 109.46722 * 32.07643 * 14 12 3 16 16 C 1.52998 * 109.46971 * 272.07944 * 14 12 3 17 17 C 1.53002 * 109.47104 * 179.97438 * 16 14 12 18 18 C 1.52997 * 109.46935 * 60.00159 * 17 16 14 19 19 C 1.53007 * 109.46890 * 299.99905 * 18 17 16 20 20 C 1.52994 * 109.47456 * 60.00145 * 19 18 17 21 21 H 1.08991 * 109.47291 * 179.97438 * 20 19 18 22 22 O 1.42903 * 109.46704 * 59.99792 * 20 19 18 23 23 C 1.42897 * 113.99993 * 90.00748 * 22 20 19 24 24 H 1.08998 * 109.47187 * 53.37404 * 1 2 3 25 25 H 1.08998 * 109.47228 * 173.37357 * 1 2 3 26 26 H 1.08999 * 109.46939 * 293.37893 * 1 2 3 27 27 H 1.08997 * 109.47049 * 239.99521 * 2 1 3 28 28 H 1.09006 * 109.47278 * 120.00039 * 2 1 3 29 29 H 0.96999 * 119.99763 * 179.97438 * 7 6 4 30 30 H 1.09000 * 109.47051 * 59.99526 * 16 14 12 31 31 H 1.08995 * 109.47128 * 300.00071 * 16 14 12 32 32 H 1.08999 * 109.46899 * 300.00329 * 17 16 14 33 33 H 1.09002 * 109.46829 * 179.97438 * 17 16 14 34 34 H 1.09000 * 109.47581 * 59.99678 * 18 17 16 35 35 H 1.09004 * 109.47294 * 180.02562 * 18 17 16 36 36 H 1.09000 * 109.46847 * 180.02562 * 19 18 17 37 37 H 1.09003 * 109.47176 * 299.99576 * 19 18 17 38 38 H 1.08998 * 109.47190 * 179.97438 * 23 22 20 39 39 H 1.09006 * 109.46764 * 299.99475 * 23 22 20 40 40 H 1.08995 * 109.47967 * 59.99469 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2924 2.0113 -1.1864 5 1 2.7377 2.9952 -1.1850 6 6 1.9973 1.3840 -2.3906 7 7 1.0506 0.4742 -2.4428 8 14 2.9463 1.8341 -3.9353 9 1 4.3899 1.5534 -3.7289 10 1 2.4434 1.0292 -5.0775 11 1 2.7598 3.2781 -4.2278 12 6 2.1984 2.0324 1.1662 13 8 2.0241 1.4530 2.2174 14 6 2.6159 3.4804 1.1640 15 1 2.1972 3.9779 0.2892 16 6 4.1426 3.5708 1.1203 17 6 4.5665 5.0410 1.1175 18 6 4.0514 5.7226 2.3866 19 6 2.5246 5.6322 2.4304 20 6 2.1007 4.1621 2.4331 21 1 1.0131 4.0977 2.4647 22 8 2.6496 3.5103 3.5803 23 6 1.8059 3.5541 4.7328 24 1 -0.3633 0.6131 -0.8247 25 1 -0.3633 -1.0208 -0.1186 26 1 -0.3633 0.4078 0.9433 27 1 1.8933 -0.5139 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 0.8443 0.0366 -3.2835 30 1 4.5095 3.0855 0.2159 31 1 4.5612 3.0733 1.9950 32 1 4.1478 5.5381 0.2425 33 1 5.6542 5.1053 1.0868 34 1 4.4700 5.2255 3.2617 35 1 4.3530 6.7701 2.3845 36 1 2.1576 6.1182 3.3343 37 1 2.1060 6.1294 1.5554 38 1 2.2934 3.0377 5.5597 39 1 1.6228 4.5923 5.0098 40 1 0.8580 3.0653 4.5081 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339133649.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:00 Heat of formation + Delta-G solvation = -98.596096 kcal Electronic energy + Delta-G solvation = -20796.649463 eV Core-core repulsion = 17803.896476 eV Total energy + Delta-G solvation = -2992.752987 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.14617 -39.28022 -36.77820 -36.73527 -33.39631 -32.58602 -31.02018 -30.78794 -27.29518 -26.69616 -24.94241 -23.39284 -22.99816 -20.92904 -20.44538 -18.72074 -17.89789 -17.13700 -16.53063 -16.30741 -15.96325 -15.83517 -15.58541 -15.01416 -14.63183 -14.38249 -14.22546 -13.78754 -13.76628 -13.24334 -13.15737 -12.92457 -12.83465 -12.73855 -12.52473 -12.23459 -12.11710 -12.08167 -11.94300 -11.63377 -11.56379 -11.31994 -10.89784 -10.77652 -10.34645 -9.87707 -9.69031 -8.23829 -5.73434 1.44951 1.52009 1.59375 2.12130 2.33608 3.02852 3.07622 3.17686 3.84758 3.94143 4.02362 4.32918 4.36330 4.42457 4.47385 4.54089 4.61341 4.64295 4.66633 4.73921 4.83754 4.86825 4.92515 4.96310 5.01814 5.10340 5.13363 5.30400 5.33288 5.36581 5.41043 5.43260 5.53551 5.63695 5.82023 5.89569 6.50376 6.56689 7.21686 7.73291 8.15094 8.75408 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.022446 B = 0.008296 C = 0.006486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.138927 B = 3374.312092 C = 4315.628619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.136 3.864 3 N -0.457 5.457 4 C -0.355 4.355 5 H 0.111 0.889 6 C -0.003 4.003 7 N -0.877 5.877 8 Si 0.978 3.022 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.263 1.263 12 C 0.445 3.555 13 O -0.625 6.625 14 C -0.083 4.083 15 H 0.095 0.905 16 C -0.093 4.093 17 C -0.110 4.110 18 C -0.107 4.107 19 C -0.133 4.133 20 C 0.109 3.891 21 H 0.037 0.963 22 O -0.380 6.380 23 C 0.038 3.962 24 H 0.069 0.931 25 H 0.053 0.947 26 H 0.011 0.989 27 H 0.081 0.919 28 H 0.025 0.975 29 H 0.269 0.731 30 H 0.054 0.946 31 H 0.047 0.953 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.056 0.944 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.056 0.944 40 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.385 9.958 4.336 11.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.012 3.988 3 N -0.175 5.175 4 C -0.482 4.482 5 H 0.128 0.872 6 C -0.205 4.205 7 N -0.515 5.515 8 Si 0.803 3.197 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.188 1.188 12 C 0.235 3.765 13 O -0.513 6.513 14 C -0.104 4.104 15 H 0.113 0.887 16 C -0.132 4.132 17 C -0.148 4.148 18 C -0.145 4.145 19 C -0.170 4.170 20 C 0.051 3.949 21 H 0.056 0.944 22 O -0.298 6.298 23 C -0.058 4.058 24 H 0.088 0.912 25 H 0.072 0.928 26 H 0.030 0.970 27 H 0.100 0.900 28 H 0.043 0.957 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.075 0.925 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.105 0.895 39 H 0.074 0.926 40 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 3.366 9.428 4.670 11.047 hybrid contribution -0.326 -0.455 -0.785 0.964 sum 3.040 8.973 3.886 10.240 Atomic orbital electron populations 1.21758 0.96019 1.00896 0.99014 1.21091 0.94957 0.83872 0.98841 1.44118 1.56222 1.11579 1.05611 1.19953 1.41170 1.04258 0.82783 0.87152 1.25955 0.95863 0.97039 1.01657 1.70289 1.25669 1.27774 1.27790 0.85213 0.78681 0.78742 0.77105 1.19987 1.21084 1.18751 1.20730 0.82786 0.90021 0.82995 1.90490 1.58884 1.69818 1.32129 1.21215 0.98709 0.92368 0.98131 0.88745 1.21245 0.92392 0.98598 1.00930 1.21523 1.01182 0.93322 0.98758 1.21398 0.94410 1.00913 0.97745 1.22013 0.97858 0.93973 1.03186 1.21843 0.95442 0.92339 0.85285 0.94437 1.87934 1.43859 1.78081 1.19950 1.22700 0.94268 1.00507 0.88353 0.91202 0.92839 0.97036 0.90047 0.95677 0.92094 0.92708 0.93394 0.91090 0.90541 0.92500 0.89758 0.90447 0.89982 0.89540 0.92581 0.96203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.76 9.54 71.98 0.69 -5.07 16 2 C 0.14 7.03 5.34 86.38 0.46 7.49 16 3 N -0.46 -23.84 2.63 -635.54 -1.67 -25.51 16 4 C -0.35 -17.77 8.89 84.04 0.75 -17.02 16 5 H 0.11 5.16 5.65 -2.91 -0.02 5.14 16 6 C 0.00 -0.12 4.94 84.93 0.42 0.30 16 7 N -0.88 -44.38 8.42 21.66 0.18 -44.20 16 8 Si 0.98 38.68 29.62 68.60 2.03 40.72 16 9 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 10 H -0.29 -11.24 7.11 99.48 0.71 -10.53 16 11 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 12 C 0.44 22.48 6.69 87.66 0.59 23.07 16 13 O -0.63 -34.88 14.69 17.20 0.25 -34.63 16 14 C -0.08 -3.35 1.51 -11.54 -0.02 -3.37 16 15 H 0.09 3.76 6.56 -2.39 -0.02 3.74 16 16 C -0.09 -3.38 4.90 30.59 0.15 -3.23 16 17 C -0.11 -2.93 5.92 30.59 0.18 -2.75 16 18 C -0.11 -2.58 5.78 30.60 0.18 -2.41 16 19 C -0.13 -3.43 5.63 30.59 0.17 -3.25 16 20 C 0.11 3.89 2.18 30.59 0.07 3.96 16 21 H 0.04 1.41 7.78 -2.39 -0.02 1.39 16 22 O -0.38 -14.49 7.41 -128.73 -0.95 -15.45 16 23 C 0.04 1.18 10.82 113.37 1.23 2.41 16 24 H 0.07 3.62 6.42 -2.39 -0.02 3.60 16 25 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 26 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.08 4.33 5.92 -2.39 -0.01 4.31 16 28 H 0.02 1.32 7.44 -2.38 -0.02 1.30 16 29 H 0.27 12.93 8.31 -92.71 -0.77 12.16 16 30 H 0.05 2.09 7.55 -2.39 -0.02 2.08 16 31 H 0.05 1.90 7.68 -2.39 -0.02 1.89 16 32 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.06 1.51 7.68 -2.39 -0.02 1.50 16 35 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.08 1.72 7.87 -2.39 -0.02 1.70 16 37 H 0.08 1.91 8.14 -2.39 -0.02 1.90 16 38 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 39 H 0.06 1.36 7.87 -2.38 -0.02 1.35 16 40 H 0.02 0.66 8.08 -2.39 -0.02 0.64 16 Total: -1.00 -61.56 308.05 5.71 -55.85 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: 1.00 Total: 23.08 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: 4.86 Total: 0.13 kcal Atomic # 7 Polarization: -68.22 SS G_CDS: -1.49 Total: -69.71 kcal Atomic # 8 Polarization: -49.38 SS G_CDS: -0.70 Total: -50.08 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 2.03 Total: 40.72 kcal Total: -61.56 5.71 -55.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339133649.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.745 kcal (2) G-P(sol) polarization free energy of solvation -61.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds