Wall clock time and date at job start Mon Mar 30 2020 03:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46504 * 109.47074 * 2 1 4 4 C 1.46505 * 119.99537 * 274.77169 * 3 2 1 5 5 C 1.50702 * 109.47100 * 270.26947 * 4 3 2 6 6 H 1.07996 * 120.00030 * 0.02562 * 5 4 3 7 7 C 1.37877 * 119.99946 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99996 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99819 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46980 * 90.00503 * 9 7 5 11 11 H 1.48504 * 109.46925 * 210.00292 * 9 7 5 12 12 H 1.48497 * 109.47381 * 330.00289 * 9 7 5 13 13 C 1.34773 * 120.00478 * 95.04164 * 3 2 1 14 14 O 1.21280 * 120.00215 * 174.82453 * 13 3 2 15 15 C 1.50706 * 119.99539 * 354.82933 * 13 3 2 16 16 H 1.08992 * 110.27515 * 316.09775 * 15 13 3 17 17 C 1.54947 * 110.30957 * 78.29944 * 15 13 3 18 18 C 1.55302 * 100.94210 * 155.35435 * 17 15 13 19 19 C 1.54384 * 102.25521 * 325.86781 * 18 17 15 20 20 C 1.52995 * 109.82628 * 261.84164 * 19 18 17 21 21 C 1.52998 * 109.90278 * 140.90911 * 19 18 17 22 22 O 1.43238 * 107.58472 * 21.35548 * 19 18 17 23 23 H 1.08997 * 109.47561 * 300.00200 * 1 2 3 24 24 H 1.08995 * 109.47348 * 60.00340 * 1 2 3 25 25 H 1.09004 * 109.46775 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47561 * 239.99800 * 2 1 3 27 27 H 1.09000 * 109.47338 * 119.99200 * 2 1 3 28 28 H 1.09002 * 109.47276 * 30.27475 * 4 3 2 29 29 H 1.09001 * 109.46773 * 150.27163 * 4 3 2 30 30 H 0.97002 * 119.99676 * 179.97438 * 8 7 5 31 31 H 1.08999 * 111.12583 * 273.27631 * 17 15 13 32 32 H 1.09007 * 111.12590 * 37.43988 * 17 15 13 33 33 H 1.08998 * 110.85076 * 207.67002 * 18 17 15 34 34 H 1.09004 * 110.84112 * 84.05667 * 18 17 15 35 35 H 1.09008 * 109.46680 * 179.58994 * 20 19 18 36 36 H 1.09001 * 109.47569 * 299.58105 * 20 19 18 37 37 H 1.08992 * 109.47624 * 59.58714 * 20 19 18 38 38 H 1.08997 * 109.47743 * 300.35971 * 21 19 18 39 39 H 1.08997 * 109.47299 * 60.37297 * 21 19 18 40 40 H 1.09008 * 109.47037 * 180.36730 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1629 2.1070 -1.2644 5 6 3.5452 1.8785 -1.8195 6 1 4.2458 1.2548 -1.2842 7 6 3.9152 2.4649 -3.0112 8 7 3.0619 3.2241 -3.6633 9 14 5.6283 2.1811 -3.6996 10 1 5.6166 0.9843 -4.5786 11 1 6.0488 3.3686 -4.4859 12 1 6.5815 1.9648 -2.5816 13 6 2.3396 1.9825 1.1626 14 8 2.8318 3.0909 1.1564 15 6 2.0874 1.2773 2.4704 16 1 1.1029 0.8097 2.4636 17 6 3.1871 0.2171 2.7305 18 6 3.1343 0.1115 4.2791 19 6 2.7907 1.5581 4.6947 20 6 4.0667 2.2987 5.0994 21 6 1.8056 1.5436 5.8653 22 8 2.1924 2.2026 3.5641 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5137 0.8900 28 1 1.4210 1.7467 -1.9771 29 1 2.0126 3.1725 -1.0910 30 1 3.3223 3.6369 -4.5016 31 1 2.9339 -0.7344 2.2630 32 1 4.1616 0.5711 2.3940 33 1 4.1023 -0.1881 4.6807 34 1 2.3519 -0.5790 4.5942 35 1 3.8184 3.3211 5.3846 36 1 4.5308 1.7887 5.9435 37 1 4.7600 2.3143 4.2585 38 1 0.8950 1.0237 5.5676 39 1 2.2570 1.0293 6.7137 40 1 1.5629 2.5678 6.1486 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345825445.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:14 Heat of formation + Delta-G solvation = -112.190317 kcal Electronic energy + Delta-G solvation = -20130.390886 eV Core-core repulsion = 17137.048410 eV Total energy + Delta-G solvation = -2993.342476 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.54491 -39.79653 -37.01359 -34.99043 -34.13387 -33.01024 -31.59056 -29.51580 -28.22768 -27.38314 -24.84107 -24.33418 -22.91830 -21.04807 -20.12298 -18.63487 -18.41483 -17.60241 -16.86012 -16.41476 -16.11100 -15.88232 -15.19109 -14.74833 -14.58889 -14.54737 -14.22520 -14.11020 -13.70288 -13.37806 -13.22239 -13.10506 -13.00853 -12.87866 -12.65477 -12.61411 -12.50739 -12.47470 -12.18766 -11.93870 -11.73655 -11.67267 -11.43093 -10.88445 -10.65510 -10.27324 -9.47762 -8.23716 -6.38597 1.34361 1.38224 1.48262 1.69431 2.07001 2.38654 2.96491 3.05730 3.40169 3.62061 3.81615 3.96265 4.04541 4.07594 4.18204 4.29784 4.42600 4.51964 4.63908 4.72758 4.77916 4.83653 4.86624 4.96845 4.98322 4.99949 5.01984 5.05338 5.11954 5.18117 5.29452 5.39355 5.42543 5.56103 5.82651 6.04381 6.12959 6.68352 6.75782 7.26301 7.44761 8.83698 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.025647 B = 0.005913 C = 0.005381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.468191 B = 4733.944400 C = 5202.166877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.092 3.908 3 N -0.598 5.598 4 C 0.263 3.737 5 C -0.541 4.541 6 H 0.053 0.947 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.969 3.031 10 H -0.259 1.259 11 H -0.281 1.281 12 H -0.275 1.275 13 C 0.492 3.508 14 O -0.591 6.591 15 C 0.073 3.927 16 H 0.118 0.882 17 C -0.143 4.143 18 C -0.129 4.129 19 C 0.080 3.920 20 C -0.153 4.153 21 C -0.146 4.146 22 O -0.384 6.384 23 H 0.057 0.943 24 H 0.038 0.962 25 H 0.101 0.899 26 H 0.076 0.924 27 H 0.105 0.895 28 H 0.027 0.973 29 H -0.010 1.010 30 H 0.267 0.733 31 H 0.122 0.878 32 H 0.056 0.944 33 H 0.104 0.896 34 H 0.112 0.888 35 H 0.048 0.952 36 H 0.098 0.902 37 H 0.036 0.964 38 H 0.067 0.933 39 H 0.095 0.905 40 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.976 -13.334 17.286 22.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.029 4.029 3 N -0.330 5.330 4 C 0.141 3.859 5 C -0.580 4.580 6 H 0.071 0.929 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.793 3.207 10 H -0.184 1.184 11 H -0.207 1.207 12 H -0.199 1.199 13 C 0.280 3.720 14 O -0.471 6.471 15 C 0.012 3.988 16 H 0.136 0.864 17 C -0.181 4.181 18 C -0.166 4.166 19 C 0.041 3.959 20 C -0.210 4.210 21 C -0.203 4.203 22 O -0.303 6.303 23 H 0.076 0.924 24 H 0.057 0.943 25 H 0.120 0.880 26 H 0.094 0.906 27 H 0.123 0.877 28 H 0.045 0.955 29 H 0.008 0.992 30 H 0.076 0.924 31 H 0.140 0.860 32 H 0.075 0.925 33 H 0.122 0.878 34 H 0.130 0.870 35 H 0.067 0.933 36 H 0.117 0.883 37 H 0.055 0.945 38 H 0.086 0.914 39 H 0.114 0.886 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.826 -12.446 17.117 21.352 hybrid contribution 0.837 0.707 -1.077 1.537 sum -1.989 -11.739 16.040 19.976 Atomic orbital electron populations 1.22172 0.94566 1.03771 1.01624 1.21945 0.95526 0.81133 1.04332 1.48224 1.63339 1.15325 1.06140 1.18716 0.96038 0.90733 0.80377 1.21682 0.99475 1.30624 1.06216 0.92899 1.25886 1.01882 0.94397 0.97072 1.70060 1.37253 1.32811 1.16794 0.85392 0.78783 0.78284 0.78198 1.18401 1.20664 1.19945 1.21342 0.77923 0.86158 0.86595 1.90634 1.45253 1.23236 1.88024 1.22934 1.01878 0.89671 0.84299 0.86443 1.23317 0.97291 0.99001 0.98508 1.23241 1.05240 0.95324 0.92794 1.22548 0.93631 0.92905 0.86782 1.22111 0.96407 1.00915 1.01611 1.22064 0.98912 1.02558 0.96768 1.88532 1.82115 1.37781 1.21895 0.92410 0.94309 0.88041 0.90560 0.87668 0.95491 0.99225 0.92390 0.85973 0.92476 0.87781 0.86993 0.93286 0.88341 0.94516 0.91414 0.88649 0.93154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.09 10.16 71.98 0.73 -3.36 16 2 C 0.09 2.82 5.77 86.38 0.50 3.31 16 3 N -0.60 -26.55 2.46 -826.14 -2.03 -28.58 16 4 C 0.26 14.79 5.14 85.63 0.44 15.23 16 5 C -0.54 -32.21 9.39 25.60 0.24 -31.97 16 6 H 0.05 3.11 7.81 -2.91 -0.02 3.08 16 7 C 0.01 0.38 5.46 84.65 0.46 0.84 16 8 N -0.93 -57.66 13.29 21.45 0.28 -57.38 16 9 Si 0.97 45.91 29.54 68.60 2.03 47.93 16 10 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 11 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 12 H -0.27 -12.90 7.11 99.48 0.71 -12.20 16 13 C 0.49 22.57 6.98 87.66 0.61 23.18 16 14 O -0.59 -34.67 16.23 15.05 0.24 -34.43 16 15 C 0.07 2.34 2.91 30.52 0.09 2.43 16 16 H 0.12 3.01 6.75 -2.39 -0.02 2.99 16 17 C -0.14 -3.46 6.02 32.05 0.19 -3.27 16 18 C -0.13 -2.20 6.09 31.85 0.19 -2.01 16 19 C 0.08 1.89 1.27 -10.33 -0.01 1.88 16 20 C -0.15 -3.67 8.73 71.98 0.63 -3.05 16 21 C -0.15 -2.54 8.75 71.98 0.63 -1.91 16 22 O -0.38 -13.47 9.96 -130.90 -1.30 -14.77 16 23 H 0.06 1.38 7.33 -2.39 -0.02 1.36 16 24 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.08 2.43 8.11 -2.39 -0.02 2.41 16 27 H 0.11 2.38 4.51 -2.39 -0.01 2.37 16 28 H 0.03 1.53 8.07 -2.39 -0.02 1.51 16 29 H -0.01 -0.68 7.49 -2.39 -0.02 -0.70 16 30 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 31 H 0.12 2.12 6.37 -2.39 -0.02 2.10 16 32 H 0.06 1.72 8.05 -2.38 -0.02 1.70 16 33 H 0.10 1.41 7.82 -2.39 -0.02 1.39 16 34 H 0.11 1.24 7.85 -2.39 -0.02 1.22 16 35 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 36 H 0.10 1.59 8.14 -2.39 -0.02 1.58 16 37 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.09 1.08 8.14 -2.39 -0.02 1.07 16 40 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 Total: -1.00 -82.07 323.08 4.93 -77.15 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: 1.00 Total: 8.76 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: 4.71 Total: 1.32 kcal Atomic # 7 Polarization: -84.21 SS G_CDS: -1.74 Total: -85.95 kcal Atomic # 8 Polarization: -48.14 SS G_CDS: -1.06 Total: -49.20 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.93 kcal Total: -82.07 4.93 -77.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345825445.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.045 kcal (2) G-P(sol) polarization free energy of solvation -82.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds