Wall clock time and date at job start Mon Mar 30 2020 04:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 114.00157 * 2 1 4 4 H 1.08992 * 109.47309 * 330.00452 * 3 2 1 5 5 C 1.53002 * 109.46797 * 90.00287 * 3 2 1 6 6 C 1.52997 * 109.46978 * 180.02562 * 5 3 2 7 7 C 1.53006 * 109.47164 * 299.99874 * 6 5 3 8 8 C 1.52997 * 109.47127 * 59.99836 * 7 6 5 9 9 C 1.52996 * 109.47126 * 209.99807 * 3 2 1 10 10 H 1.09001 * 109.47372 * 300.00501 * 9 3 2 11 11 C 1.50706 * 109.47306 * 60.00369 * 9 3 2 12 12 O 1.21279 * 119.99567 * 359.97438 * 11 9 3 13 13 N 1.34775 * 120.00133 * 180.02562 * 11 9 3 14 14 C 1.46496 * 119.99642 * 179.97438 * 13 11 9 15 15 C 1.53007 * 109.47321 * 179.97438 * 14 13 11 16 16 C 1.50695 * 109.47561 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99593 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00253 * 180.02562 * 16 15 14 19 19 N 1.31518 * 119.99788 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00176 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47539 * 59.99204 * 20 18 16 22 22 H 1.48496 * 109.47153 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.46814 * 299.99115 * 20 18 16 24 24 H 1.08997 * 109.46639 * 300.00020 * 1 2 3 25 25 H 1.09006 * 109.46730 * 59.99774 * 1 2 3 26 26 H 1.08994 * 109.47474 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47097 * 299.99876 * 5 3 2 28 28 H 1.09001 * 109.47142 * 59.99841 * 5 3 2 29 29 H 1.09001 * 109.47375 * 59.99908 * 6 5 3 30 30 H 1.09000 * 109.47140 * 179.97438 * 6 5 3 31 31 H 1.08998 * 109.46505 * 299.99708 * 7 6 5 32 32 H 1.08996 * 109.46884 * 180.02562 * 7 6 5 33 33 H 1.09002 * 109.47153 * 180.02562 * 8 7 6 34 34 H 1.09001 * 109.46832 * 60.00321 * 8 7 6 35 35 H 0.96998 * 120.00166 * 359.97438 * 13 11 9 36 36 H 1.09000 * 109.47574 * 300.00134 * 14 13 11 37 37 H 1.09001 * 109.47459 * 59.99643 * 14 13 11 38 38 H 1.09001 * 109.46479 * 300.00147 * 15 14 13 39 39 H 1.08998 * 109.46501 * 59.99547 * 15 14 13 40 40 H 0.96997 * 119.99752 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3451 1.9994 -0.5137 5 6 2.2178 1.7713 1.4425 6 6 2.8395 3.1692 1.4426 7 6 4.1882 3.1276 0.7211 8 6 3.9807 2.6618 -0.7214 9 6 3.3590 1.2632 -0.7212 10 1 4.0242 0.5692 -0.2074 11 6 3.1547 0.8044 -2.1421 12 8 2.0402 0.5370 -2.5386 13 7 4.2106 0.6902 -2.9718 14 6 4.0120 0.2436 -4.3528 15 6 5.3607 0.2014 -5.0742 16 6 5.1564 -0.2573 -6.4950 17 1 4.1639 -0.4955 -6.8480 18 6 6.2366 -0.3741 -7.3438 19 7 7.4452 -0.0846 -6.9137 20 14 5.9832 -0.9421 -9.1052 21 1 5.0775 0.0040 -9.8050 22 1 7.2922 -0.9831 -9.8052 23 1 5.3784 -2.2984 -9.1057 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.2569 1.8014 1.9564 28 1 2.8830 1.0773 1.9563 29 1 2.1739 3.8630 0.9289 30 1 2.9869 3.5013 2.4703 31 1 4.8537 2.4340 1.2349 32 1 4.6313 4.1235 0.7216 33 1 4.9415 2.6317 -1.2352 34 1 3.3151 3.3555 -1.2350 35 1 5.1021 0.9036 -2.6545 36 1 3.5685 -0.7521 -4.3525 37 1 3.3469 0.9374 -4.8670 38 1 5.8038 1.1973 -5.0745 39 1 6.0261 -0.4921 -4.5601 40 1 8.2051 -0.1664 -7.5110 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346372158.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:00 Heat of formation + Delta-G solvation = -117.357690 kcal Electronic energy + Delta-G solvation = -19370.920927 eV Core-core repulsion = 16377.354376 eV Total energy + Delta-G solvation = -2993.566551 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.14113 -38.02154 -36.35791 -34.74189 -32.82859 -31.41650 -30.06544 -29.29227 -26.40354 -24.96084 -23.35010 -22.31999 -20.94976 -20.34935 -19.64341 -16.98915 -16.62049 -16.29595 -15.58181 -15.13263 -14.88132 -14.59836 -14.47736 -14.08368 -13.84306 -13.73905 -13.27131 -12.79756 -12.57545 -12.27309 -12.16041 -11.75057 -11.38726 -11.20113 -11.15324 -10.99301 -10.96734 -10.70092 -10.63933 -10.45101 -10.26869 -9.70500 -9.49231 -9.35020 -9.01845 -8.48462 -8.28365 -6.07353 -4.10051 3.12924 3.32508 3.36131 3.39295 3.72682 3.80396 4.43024 4.49799 4.62385 4.76865 5.01310 5.07765 5.16978 5.20983 5.25434 5.29563 5.35095 5.37067 5.52263 5.63035 5.72262 5.79595 5.82892 5.90180 5.91683 5.95694 6.07168 6.20505 6.40200 6.41522 6.78985 7.01945 7.30950 7.54901 7.65179 7.91176 8.11585 8.31314 8.77974 8.95963 9.54576 11.04262 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.033905 B = 0.004088 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.626675 B = 6848.233486 C = 7504.570553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.373 6.373 3 C 0.112 3.888 4 H 0.065 0.935 5 C -0.141 4.141 6 C -0.118 4.118 7 C -0.120 4.120 8 C -0.110 4.110 9 C -0.106 4.106 10 H 0.101 0.899 11 C 0.513 3.487 12 O -0.542 6.542 13 N -0.724 5.724 14 C 0.123 3.877 15 C 0.013 3.987 16 C -0.522 4.522 17 H 0.058 0.942 18 C 0.059 3.941 19 N -0.895 5.895 20 Si 0.897 3.103 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.276 1.276 24 H 0.032 0.968 25 H 0.045 0.955 26 H 0.080 0.920 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.396 0.604 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.022 0.978 39 H 0.022 0.978 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.821 6.398 17.974 20.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.291 6.291 3 C 0.053 3.947 4 H 0.083 0.917 5 C -0.179 4.179 6 C -0.156 4.156 7 C -0.157 4.157 8 C -0.148 4.148 9 C -0.128 4.128 10 H 0.119 0.881 11 C 0.298 3.702 12 O -0.419 6.419 13 N -0.374 5.374 14 C 0.000 4.000 15 C -0.024 4.024 16 C -0.560 4.560 17 H 0.077 0.923 18 C -0.142 4.142 19 N -0.534 5.534 20 Si 0.724 3.276 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.201 1.201 24 H 0.050 0.950 25 H 0.064 0.936 26 H 0.099 0.901 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.229 0.771 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.040 0.960 39 H 0.040 0.960 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.330 6.031 17.595 20.380 hybrid contribution 0.244 -0.054 -0.848 0.884 sum -8.086 5.977 16.747 19.534 Atomic orbital electron populations 1.22661 0.81328 1.02295 0.99416 1.87891 1.19512 1.26921 1.94816 1.21768 0.93362 0.85521 0.94003 0.91714 1.22068 1.01424 0.97175 0.97207 1.21519 0.96890 0.96556 1.00626 1.21566 0.97295 1.01662 0.95197 1.21542 1.01404 0.94289 0.97585 1.21492 0.98215 0.98922 0.94149 0.88097 1.20343 0.85044 0.77906 0.86933 1.90643 1.24115 1.50019 1.77145 1.46319 1.09577 1.67885 1.13666 1.21676 1.01081 0.98445 0.78754 1.19313 0.90260 0.97769 0.95097 1.21026 0.93823 1.45446 0.95741 0.92350 1.24989 0.95110 0.95273 0.98872 1.69948 0.98589 1.48666 1.36165 0.86575 0.77282 0.79400 0.84298 1.20132 1.21241 1.20111 0.94975 0.93645 0.90149 0.91734 0.91023 0.91853 0.91625 0.91469 0.91360 0.90455 0.91193 0.77091 0.92721 0.92786 0.96006 0.95983 0.92817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.48 10.82 101.05 1.09 1.58 16 2 O -0.37 -5.58 9.24 -53.49 -0.49 -6.07 16 3 C 0.11 1.43 1.59 -26.73 -0.04 1.39 16 4 H 0.06 0.87 7.74 -51.93 -0.40 0.47 16 5 C -0.14 -1.35 5.54 -26.73 -0.15 -1.50 16 6 C -0.12 -0.95 5.92 -26.73 -0.16 -1.11 16 7 C -0.12 -0.99 5.92 -26.73 -0.16 -1.15 16 8 C -0.11 -1.15 5.10 -26.71 -0.14 -1.29 16 9 C -0.11 -1.39 2.27 -91.74 -0.21 -1.60 16 10 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 11 C 0.51 9.03 7.01 -10.98 -0.08 8.95 16 12 O -0.54 -11.48 15.28 -12.70 -0.19 -11.67 16 13 N -0.72 -13.04 5.45 -60.29 -0.33 -13.37 16 14 C 0.12 2.69 5.61 -4.04 -0.02 2.67 16 15 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 16 C -0.52 -14.67 9.11 -34.44 -0.31 -14.98 16 17 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 18 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 20 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H 0.03 0.31 7.87 -51.93 -0.41 -0.10 16 25 H 0.04 0.59 8.09 -51.93 -0.42 0.17 16 26 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.06 0.57 7.87 -51.93 -0.41 0.16 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.78 7.57 -51.93 -0.39 0.38 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.40 6.17 7.89 -40.82 -0.32 5.85 16 36 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 324.34 15.07 4.89 4.89 Total: -1.00 -32.20 324.34 -7.79 -40.00 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -6.97 Total: 0.56 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: -0.41 Total: -5.28 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: 0.41 Total: -38.96 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: -0.69 Total: -17.75 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.20 -7.79 -40.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346372158.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.362 kcal (2) G-P(sol) polarization free energy of solvation -32.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds