Wall clock time and date at job start Mon Mar 30 2020 04:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42901 * 109.47494 * 2 1 4 4 C 1.42900 * 113.99686 * 180.02562 * 3 2 1 5 5 H 1.08993 * 112.86705 * 18.74495 * 4 3 2 6 6 C 1.53866 * 113.63492 * 247.36001 * 4 3 2 7 7 C 1.53867 * 87.15537 * 220.39824 * 6 4 3 8 8 H 1.08994 * 113.63392 * 139.61020 * 7 6 4 9 9 N 1.46495 * 113.63543 * 270.58251 * 7 6 4 10 10 C 1.36945 * 120.00112 * 252.36701 * 9 7 6 11 11 H 1.08001 * 119.99602 * 359.97438 * 10 9 7 12 12 C 1.38810 * 120.00202 * 180.02562 * 10 9 7 13 13 N 1.31620 * 119.99510 * 180.02562 * 12 10 9 14 14 Si 1.86799 * 120.00109 * 359.97438 * 12 10 9 15 15 H 1.48489 * 109.46943 * 90.00394 * 14 12 10 16 16 H 1.48506 * 109.46993 * 210.00576 * 14 12 10 17 17 H 1.48502 * 109.46972 * 330.00265 * 14 12 10 18 18 C 1.53313 * 86.95451 * 25.09292 * 7 6 4 19 19 C 1.52838 * 113.63078 * 89.58198 * 18 7 6 20 20 C 1.53273 * 108.88115 * 184.10828 * 19 18 7 21 21 O 1.42901 * 109.33049 * 304.71143 * 20 19 18 22 22 C 1.42891 * 114.36064 * 62.99807 * 21 20 19 23 23 C 1.52820 * 113.64356 * 220.05489 * 18 7 6 24 24 H 1.08995 * 109.47520 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46658 * 300.00149 * 1 2 3 26 26 H 1.08998 * 109.47028 * 59.99410 * 1 2 3 27 27 H 1.09002 * 109.46658 * 239.99851 * 2 1 3 28 28 H 1.08998 * 109.47028 * 120.00590 * 2 1 3 29 29 H 1.08991 * 113.60531 * 334.97021 * 6 4 3 30 30 H 1.08998 * 113.59358 * 105.75203 * 6 4 3 31 31 H 0.97003 * 120.00880 * 72.36346 * 9 7 6 32 32 H 0.97005 * 119.99465 * 179.97438 * 13 12 10 33 33 H 1.08999 * 109.57229 * 303.93196 * 19 18 7 34 34 H 1.09004 * 109.56874 * 64.29435 * 19 18 7 35 35 H 1.08997 * 109.49540 * 184.75052 * 20 19 18 36 36 H 1.09002 * 109.49371 * 64.66592 * 20 19 18 37 37 H 1.08994 * 109.49717 * 177.04063 * 22 21 20 38 38 H 1.09003 * 109.49423 * 56.95470 * 22 21 20 39 39 H 1.09000 * 109.56966 * 295.71384 * 23 18 7 40 40 H 1.08998 * 109.56982 * 55.95171 * 23 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4599 -0.0006 5 1 3.9281 0.5453 -0.3237 6 6 4.0037 2.0493 1.3002 7 6 4.9855 2.8410 0.4189 8 1 5.1480 3.8645 0.7565 9 7 6.2341 2.1263 0.1425 10 6 7.3985 2.5244 0.7434 11 1 7.3963 3.3655 1.4208 12 6 8.5816 1.8475 0.4810 13 7 9.7006 2.2300 1.0591 14 14 8.5855 0.3932 -0.6912 15 1 8.8434 0.8719 -2.0730 16 1 9.6500 -0.5620 -0.2915 17 1 7.2661 -0.2866 -0.6410 18 6 3.9475 2.7212 -0.7029 19 6 2.9358 3.8666 -0.7264 20 6 1.8951 3.5869 -1.8163 21 8 2.5603 3.3836 -3.0646 22 6 3.4281 2.2487 -3.0921 23 6 4.5587 2.4499 -2.0770 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.2980 2.6790 1.8418 30 1 4.4871 1.3097 1.9385 31 1 6.2362 1.3710 -0.4662 32 1 10.5273 1.7567 0.8760 33 1 2.4406 3.9363 0.2421 34 1 3.4496 4.8030 -0.9440 35 1 1.2177 4.4368 -1.8992 36 1 1.3278 2.6930 -1.5567 37 1 3.8509 2.1382 -4.0905 38 1 2.8633 1.3526 -2.8345 39 1 5.1724 3.2990 -2.3778 40 1 5.1750 1.5520 -2.0317 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000367016525.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:45 Heat of formation + Delta-G solvation = -60.913037 kcal Electronic energy + Delta-G solvation = -20609.832005 eV Core-core repulsion = 17618.713078 eV Total energy + Delta-G solvation = -2991.118927 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.58932 -37.62860 -36.56800 -33.47510 -31.26381 -30.99477 -30.86792 -29.72030 -24.68763 -24.04661 -23.62423 -22.81935 -22.14077 -20.54716 -18.37997 -17.56869 -16.57985 -15.99341 -15.79662 -15.52896 -14.75930 -14.65175 -14.22568 -13.97911 -13.47033 -13.34710 -12.84572 -12.79244 -12.56695 -12.19170 -12.11018 -11.97504 -11.53407 -11.27343 -11.13436 -10.97060 -10.93768 -10.70992 -10.37676 -10.23951 -10.13754 -9.85177 -9.62700 -9.16216 -8.94993 -8.86496 -7.34637 -5.83897 -3.20272 3.29023 3.32063 3.38750 3.81961 4.11042 4.51217 4.74977 4.82380 4.95411 5.05463 5.16046 5.27316 5.29165 5.32305 5.35990 5.40478 5.51564 5.53020 5.61395 5.64942 5.77397 5.84500 5.88329 5.92890 5.95659 6.00503 6.16484 6.24207 6.30226 6.38845 6.47369 6.62442 6.72344 6.84150 7.44273 7.45979 7.93467 8.35487 9.12347 9.84502 10.03233 11.34217 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.022685 B = 0.007075 C = 0.006535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.022043 B = 3956.450738 C = 4283.496817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.054 3.946 3 O -0.372 6.372 4 C 0.073 3.927 5 H 0.079 0.921 6 C -0.184 4.184 7 C 0.185 3.815 8 H 0.079 0.921 9 N -0.728 5.728 10 C -0.246 4.246 11 H 0.093 0.907 12 C 0.008 3.992 13 N -0.930 5.930 14 Si 0.880 3.120 15 H -0.282 1.282 16 H -0.289 1.289 17 H -0.279 1.279 18 C -0.094 4.094 19 C -0.115 4.115 20 C 0.062 3.938 21 O -0.389 6.389 22 C 0.066 3.934 23 C -0.134 4.134 24 H 0.065 0.935 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.042 0.958 28 H 0.046 0.954 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.361 0.639 32 H 0.260 0.740 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.086 0.914 38 H 0.043 0.957 39 H 0.078 0.922 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.804 -2.550 -4.748 18.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.023 4.023 3 O -0.292 6.292 4 C 0.016 3.984 5 H 0.097 0.903 6 C -0.226 4.226 7 C 0.073 3.927 8 H 0.097 0.903 9 N -0.368 5.368 10 C -0.376 4.376 11 H 0.111 0.889 12 C -0.188 4.188 13 N -0.577 5.577 14 Si 0.710 3.290 15 H -0.208 1.208 16 H -0.215 1.215 17 H -0.206 1.206 18 C -0.096 4.096 19 C -0.153 4.153 20 C -0.015 4.015 21 O -0.308 6.308 22 C -0.011 4.011 23 C -0.172 4.172 24 H 0.084 0.916 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.195 0.805 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.084 0.916 37 H 0.104 0.896 38 H 0.062 0.938 39 H 0.097 0.903 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.712 -2.158 -4.766 18.469 hybrid contribution 0.445 -1.684 -0.470 1.804 sum -17.267 -3.842 -5.236 18.448 Atomic orbital electron populations 1.21732 0.94179 1.01853 1.02855 1.22437 0.95143 0.84939 0.99765 1.87903 1.21499 1.25184 1.94589 1.23772 0.79741 0.97069 0.97837 0.90342 1.24291 0.99783 1.01406 0.97073 1.20858 0.84356 0.95730 0.91758 0.90324 1.42547 1.04171 1.35888 1.54188 1.19102 0.84203 1.12945 1.21333 0.88923 1.24652 0.95394 0.98982 0.99760 1.69693 0.98724 1.42713 1.46615 0.86635 0.76970 0.83624 0.81790 1.20828 1.21544 1.20574 1.22479 0.96773 0.94894 0.95471 1.21711 0.96490 0.97238 0.99839 1.22669 0.93929 1.01416 0.83468 1.87819 1.60737 1.48177 1.34079 1.22543 0.90905 0.88233 0.99413 1.21984 0.97729 1.03106 0.94398 0.91561 0.91941 0.92104 0.93958 0.93614 0.90158 0.91181 0.80470 0.92945 0.90557 0.91331 0.89950 0.91566 0.89567 0.93844 0.90287 0.91253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 10.28 37.16 0.38 -1.01 16 2 C 0.05 0.63 6.50 37.16 0.24 0.87 16 3 O -0.37 -5.19 7.52 -35.23 -0.26 -5.46 16 4 C 0.07 1.14 3.54 -26.11 -0.09 1.05 16 5 H 0.08 1.27 7.75 -51.93 -0.40 0.87 16 6 C -0.18 -3.12 7.37 -25.83 -0.19 -3.32 16 7 C 0.18 3.52 4.01 -67.32 -0.27 3.25 16 8 H 0.08 1.55 8.05 -51.93 -0.42 1.13 16 9 N -0.73 -16.69 4.63 -52.83 -0.24 -16.94 16 10 C -0.25 -6.79 10.45 -15.06 -0.16 -6.95 16 11 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 12 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 13 N -0.93 -28.81 13.97 55.49 0.78 -28.03 16 14 Si 0.88 21.66 27.74 -169.99 -4.71 16.94 16 15 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 16 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 17 H -0.28 -6.44 6.52 56.52 0.37 -6.07 16 18 C -0.09 -1.51 0.73 -154.35 -0.11 -1.62 16 19 C -0.11 -1.64 4.87 -26.67 -0.13 -1.77 16 20 C 0.06 0.83 6.69 37.30 0.25 1.08 16 21 O -0.39 -5.92 10.72 -35.23 -0.38 -6.29 16 22 C 0.07 0.94 6.78 37.30 0.25 1.19 16 23 C -0.13 -2.17 4.82 -26.69 -0.13 -2.30 16 24 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.08 1.25 7.65 -51.93 -0.40 0.85 16 30 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 31 H 0.36 8.14 4.14 -40.82 -0.17 7.97 16 32 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 33 H 0.08 1.04 7.30 -51.93 -0.38 0.66 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.07 0.90 6.13 -51.93 -0.32 0.58 16 37 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.04 0.59 8.13 -51.93 -0.42 0.17 16 39 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 40 H 0.07 1.17 6.52 -51.93 -0.34 0.83 16 LS Contribution 310.31 15.07 4.68 4.68 Total: -1.00 -30.14 310.31 -6.87 -37.01 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -6.66 Total: 7.48 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: -0.05 Total: -9.39 kcal Atomic # 7 Polarization: -45.50 SS G_CDS: 0.53 Total: -44.97 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: -0.64 Total: -11.75 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.71 Total: 16.94 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.14 -6.87 -37.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367016525.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.908 kcal (2) G-P(sol) polarization free energy of solvation -30.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds