Wall clock time and date at job start Mon Mar 30 2020 04:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42901 * 109.47494 * 2 1 4 4 C 1.42900 * 113.99686 * 180.02562 * 3 2 1 5 5 H 1.08993 * 112.86705 * 18.74495 * 4 3 2 6 6 C 1.53866 * 113.63492 * 247.36001 * 4 3 2 7 7 C 1.53867 * 87.15537 * 220.39824 * 6 4 3 8 8 H 1.08994 * 113.63392 * 139.61020 * 7 6 4 9 9 N 1.46495 * 113.63543 * 270.58251 * 7 6 4 10 10 C 1.36945 * 120.00112 * 252.36701 * 9 7 6 11 11 H 1.08001 * 119.99602 * 359.97438 * 10 9 7 12 12 C 1.38810 * 120.00202 * 180.02562 * 10 9 7 13 13 N 1.31620 * 119.99510 * 180.02562 * 12 10 9 14 14 Si 1.86799 * 120.00109 * 359.97438 * 12 10 9 15 15 H 1.48489 * 109.46943 * 90.00394 * 14 12 10 16 16 H 1.48506 * 109.46993 * 210.00576 * 14 12 10 17 17 H 1.48502 * 109.46972 * 330.00265 * 14 12 10 18 18 C 1.53313 * 86.95451 * 25.09292 * 7 6 4 19 19 C 1.52838 * 113.63078 * 89.58198 * 18 7 6 20 20 C 1.53273 * 108.88115 * 184.10828 * 19 18 7 21 21 O 1.42901 * 109.33049 * 304.71143 * 20 19 18 22 22 C 1.42891 * 114.36064 * 62.99807 * 21 20 19 23 23 C 1.52820 * 113.64356 * 220.05489 * 18 7 6 24 24 H 1.08995 * 109.47520 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46658 * 300.00149 * 1 2 3 26 26 H 1.08998 * 109.47028 * 59.99410 * 1 2 3 27 27 H 1.09002 * 109.46658 * 239.99851 * 2 1 3 28 28 H 1.08998 * 109.47028 * 120.00590 * 2 1 3 29 29 H 1.08991 * 113.60531 * 334.97021 * 6 4 3 30 30 H 1.08998 * 113.59358 * 105.75203 * 6 4 3 31 31 H 0.97003 * 120.00880 * 72.36346 * 9 7 6 32 32 H 0.97005 * 119.99465 * 179.97438 * 13 12 10 33 33 H 1.08999 * 109.57229 * 303.93196 * 19 18 7 34 34 H 1.09004 * 109.56874 * 64.29435 * 19 18 7 35 35 H 1.08997 * 109.49540 * 184.75052 * 20 19 18 36 36 H 1.09002 * 109.49371 * 64.66592 * 20 19 18 37 37 H 1.08994 * 109.49717 * 177.04063 * 22 21 20 38 38 H 1.09003 * 109.49423 * 56.95470 * 22 21 20 39 39 H 1.09000 * 109.56966 * 295.71384 * 23 18 7 40 40 H 1.08998 * 109.56982 * 55.95171 * 23 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4599 -0.0006 5 1 3.9281 0.5453 -0.3237 6 6 4.0037 2.0493 1.3002 7 6 4.9855 2.8410 0.4189 8 1 5.1480 3.8645 0.7565 9 7 6.2341 2.1263 0.1425 10 6 7.3985 2.5244 0.7434 11 1 7.3963 3.3655 1.4208 12 6 8.5816 1.8475 0.4810 13 7 9.7006 2.2300 1.0591 14 14 8.5855 0.3932 -0.6912 15 1 8.8434 0.8719 -2.0730 16 1 9.6500 -0.5620 -0.2915 17 1 7.2661 -0.2866 -0.6410 18 6 3.9475 2.7212 -0.7029 19 6 2.9358 3.8666 -0.7264 20 6 1.8951 3.5869 -1.8163 21 8 2.5603 3.3836 -3.0646 22 6 3.4281 2.2487 -3.0921 23 6 4.5587 2.4499 -2.0770 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.2980 2.6790 1.8418 30 1 4.4871 1.3097 1.9385 31 1 6.2362 1.3710 -0.4662 32 1 10.5273 1.7567 0.8760 33 1 2.4406 3.9363 0.2421 34 1 3.4496 4.8030 -0.9440 35 1 1.2177 4.4368 -1.8992 36 1 1.3278 2.6930 -1.5567 37 1 3.8509 2.1382 -4.0905 38 1 2.8633 1.3526 -2.8345 39 1 5.1724 3.2990 -2.3778 40 1 5.1750 1.5520 -2.0317 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000367016525.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:44 Heat of formation + Delta-G solvation = -80.473137 kcal Electronic energy + Delta-G solvation = -20610.680195 eV Core-core repulsion = 17618.713078 eV Total energy + Delta-G solvation = -2991.967116 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.89294 -38.77389 -37.81482 -35.36078 -32.93419 -32.27738 -31.86916 -31.14520 -26.35986 -25.30820 -24.97245 -23.93558 -23.43872 -21.91870 -20.14876 -19.14150 -17.78958 -17.31961 -16.93739 -16.57016 -16.43991 -15.92645 -15.65572 -15.32850 -14.90895 -14.65412 -14.54760 -14.05719 -13.74561 -13.48601 -13.23532 -13.16904 -13.04867 -12.86134 -12.41791 -12.27483 -12.17462 -12.11900 -11.93849 -11.87774 -11.47319 -11.30712 -11.22261 -10.91045 -10.28048 -10.12550 -9.32688 -8.05642 -5.39651 1.31700 1.36574 1.42906 2.43868 2.73786 3.03060 3.24105 3.36020 3.49971 3.67718 3.88581 4.03375 4.13587 4.19363 4.21313 4.23177 4.37070 4.40347 4.53018 4.62471 4.66280 4.69877 4.75673 4.85329 4.91761 4.96668 5.04411 5.08577 5.11979 5.17622 5.22659 5.30500 5.36025 5.51941 5.75741 6.18610 6.34732 6.35521 7.03201 7.78234 7.97481 9.15810 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.022685 B = 0.007075 C = 0.006535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.022043 B = 3956.450738 C = 4283.496817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.044 3.956 3 O -0.373 6.373 4 C 0.089 3.911 5 H 0.076 0.924 6 C -0.176 4.176 7 C 0.164 3.836 8 H 0.064 0.936 9 N -0.729 5.729 10 C -0.232 4.232 11 H 0.058 0.942 12 C -0.059 4.059 13 N -0.981 5.981 14 Si 0.947 3.053 15 H -0.275 1.275 16 H -0.294 1.294 17 H -0.253 1.253 18 C -0.084 4.084 19 C -0.113 4.113 20 C 0.064 3.936 21 O -0.401 6.401 22 C 0.070 3.930 23 C -0.136 4.136 24 H 0.085 0.915 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.049 0.951 28 H 0.045 0.955 29 H 0.096 0.904 30 H 0.053 0.947 31 H 0.366 0.634 32 H 0.258 0.742 33 H 0.084 0.916 34 H 0.062 0.938 35 H 0.103 0.897 36 H 0.070 0.930 37 H 0.102 0.898 38 H 0.054 0.946 39 H 0.061 0.939 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.504 -3.866 -6.130 21.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.032 4.032 3 O -0.292 6.292 4 C 0.031 3.969 5 H 0.093 0.907 6 C -0.217 4.217 7 C 0.054 3.946 8 H 0.082 0.918 9 N -0.371 5.371 10 C -0.362 4.362 11 H 0.076 0.924 12 C -0.251 4.251 13 N -0.632 5.632 14 Si 0.774 3.226 15 H -0.201 1.201 16 H -0.221 1.221 17 H -0.178 1.178 18 C -0.085 4.085 19 C -0.151 4.151 20 C -0.012 4.012 21 O -0.320 6.320 22 C -0.006 4.006 23 C -0.174 4.174 24 H 0.104 0.896 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.114 0.886 30 H 0.072 0.928 31 H 0.201 0.799 32 H 0.067 0.933 33 H 0.103 0.897 34 H 0.081 0.919 35 H 0.121 0.879 36 H 0.088 0.912 37 H 0.120 0.880 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -20.493 -3.469 -6.154 21.677 hybrid contribution 1.211 -1.183 0.044 1.693 sum -19.282 -4.652 -6.110 20.755 Atomic orbital electron populations 1.21721 0.92230 1.03209 1.02889 1.22688 0.96712 0.83685 1.00103 1.87895 1.19936 1.26894 1.94474 1.23451 0.80927 0.96473 0.96090 0.90661 1.24166 0.99217 1.00862 0.97441 1.21089 0.83976 0.94957 0.94568 0.91801 1.42420 1.04096 1.36435 1.54119 1.19042 0.85976 1.11309 1.19918 0.92379 1.25439 0.94929 1.02486 1.02228 1.69875 0.99494 1.44711 1.49076 0.85535 0.77908 0.79834 0.79313 1.20140 1.22100 1.17774 1.22349 0.95760 0.96046 0.94379 1.21728 0.96315 0.96114 1.00907 1.22755 0.93555 1.02496 0.82403 1.87816 1.60820 1.48561 1.34850 1.22565 0.90123 0.88393 0.99542 1.21977 0.98352 1.01982 0.95071 0.89597 0.92048 0.91902 0.93280 0.93680 0.88570 0.92765 0.79938 0.93276 0.89703 0.91921 0.87871 0.91168 0.88014 0.92727 0.92070 0.91957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 10.28 71.98 0.74 -1.44 16 2 C 0.04 0.90 6.50 71.98 0.47 1.37 16 3 O -0.37 -9.28 7.52 -148.98 -1.12 -10.40 16 4 C 0.09 2.57 3.54 31.00 0.11 2.68 16 5 H 0.08 2.26 7.75 -2.39 -0.02 2.24 16 6 C -0.18 -5.78 7.37 31.18 0.23 -5.55 16 7 C 0.16 6.23 4.01 45.39 0.18 6.41 16 8 H 0.06 2.58 8.05 -2.39 -0.02 2.56 16 9 N -0.73 -33.48 4.63 -321.07 -1.49 -34.96 16 10 C -0.23 -13.11 10.45 84.03 0.88 -12.23 16 11 H 0.06 3.62 8.06 -2.91 -0.02 3.59 16 12 C -0.06 -3.47 5.50 84.86 0.47 -3.00 16 13 N -0.98 -62.71 13.97 21.65 0.30 -62.41 16 14 Si 0.95 44.82 27.74 68.60 1.90 46.72 16 15 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 16 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 17 H -0.25 -10.73 6.52 99.48 0.65 -10.08 16 18 C -0.08 -2.55 0.73 -52.08 -0.04 -2.59 16 19 C -0.11 -2.99 4.87 30.63 0.15 -2.84 16 20 C 0.06 1.53 6.69 72.07 0.48 2.01 16 21 O -0.40 -11.06 10.72 -148.98 -1.60 -12.66 16 22 C 0.07 1.81 6.78 72.07 0.49 2.30 16 23 C -0.14 -4.18 4.82 30.62 0.15 -4.04 16 24 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.06 0.95 8.14 -2.39 -0.02 0.94 16 26 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.10 2.84 7.65 -2.39 -0.02 2.82 16 30 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.37 16.07 4.14 -92.71 -0.38 15.69 16 32 H 0.26 15.72 8.31 -92.70 -0.77 14.95 16 33 H 0.08 2.11 7.30 -2.39 -0.02 2.09 16 34 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.07 1.65 6.13 -2.39 -0.01 1.63 16 37 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.05 1.29 8.13 -2.39 -0.02 1.27 16 39 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.06 1.99 6.52 -2.39 -0.02 1.98 16 Total: -1.00 -65.51 310.31 2.87 -62.64 By element: Atomic # 1 Polarization: 27.45 SS G_CDS: 0.57 Total: 28.02 kcal Atomic # 6 Polarization: -21.25 SS G_CDS: 4.30 Total: -16.94 kcal Atomic # 7 Polarization: -96.19 SS G_CDS: -1.18 Total: -97.37 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -2.72 Total: -23.06 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.90 Total: 46.72 kcal Total: -65.51 2.87 -62.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367016525.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.836 kcal (2) G-P(sol) polarization free energy of solvation -65.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds