Wall clock time and date at job start Mon Mar 30 2020 04:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47232 * 2 1 4 4 C 1.42902 * 114.00087 * 180.02562 * 3 2 1 5 5 H 1.08999 * 112.86734 * 338.24131 * 4 3 2 6 6 C 1.53856 * 113.63592 * 109.51034 * 4 3 2 7 7 C 1.53863 * 87.16699 * 89.41857 * 6 4 3 8 8 H 1.09005 * 113.63844 * 139.68919 * 7 6 4 9 9 N 1.46498 * 113.63539 * 270.57916 * 7 6 4 10 10 C 1.36943 * 119.99752 * 255.21482 * 9 7 6 11 11 H 1.08002 * 119.99793 * 0.27665 * 10 9 7 12 12 C 1.38811 * 120.00012 * 180.27737 * 10 9 7 13 13 N 1.31611 * 120.00081 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 119.99814 * 0.02562 * 12 10 9 15 15 H 1.48501 * 109.47483 * 90.00178 * 14 12 10 16 16 H 1.48498 * 109.47011 * 210.00042 * 14 12 10 17 17 H 1.48502 * 109.47495 * 329.99664 * 14 12 10 18 18 C 1.53311 * 113.63232 * 206.86641 * 4 3 2 19 19 C 1.52830 * 113.64384 * 25.43806 * 18 4 3 20 20 C 1.53270 * 108.87454 * 184.13519 * 19 18 4 21 21 O 1.42894 * 109.33155 * 304.68231 * 20 19 18 22 22 C 1.42907 * 114.35319 * 62.99623 * 21 20 19 23 23 C 1.52831 * 113.63361 * 155.89142 * 18 4 3 24 24 H 1.09003 * 109.46419 * 299.99188 * 1 2 3 25 25 H 1.08994 * 109.47622 * 59.99477 * 1 2 3 26 26 H 1.09007 * 109.46923 * 179.97438 * 1 2 3 27 27 H 1.09009 * 109.47071 * 240.00651 * 2 1 3 28 28 H 1.08994 * 109.47622 * 120.00523 * 2 1 3 29 29 H 1.09002 * 113.60258 * 334.84890 * 6 4 3 30 30 H 1.09001 * 113.67303 * 204.00046 * 6 4 3 31 31 H 0.97001 * 120.00384 * 75.49837 * 9 7 6 32 32 H 0.97008 * 120.00329 * 179.97438 * 13 12 10 33 33 H 1.09002 * 109.56564 * 303.94491 * 19 18 4 34 34 H 1.08991 * 109.57130 * 64.31309 * 19 18 4 35 35 H 1.08997 * 109.49494 * 184.73167 * 20 19 18 36 36 H 1.08993 * 109.52104 * 64.65297 * 20 19 18 37 37 H 1.08999 * 109.49487 * 177.05112 * 22 21 20 38 38 H 1.09004 * 109.51336 * 56.97762 * 22 21 20 39 39 H 1.08996 * 109.56935 * 295.67761 * 23 18 4 40 40 H 1.08997 * 109.57338 * 55.92769 * 23 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9270 0.5636 0.3714 6 6 4.0081 1.9783 -1.3293 7 6 3.8510 3.3975 -0.7560 8 1 4.6849 4.0587 -0.9915 9 7 2.5471 4.0033 -1.0369 10 6 2.4361 4.9760 -1.9944 11 1 3.3090 5.2933 -2.5456 12 6 1.2016 5.5542 -2.2565 13 7 1.0948 6.4887 -3.1771 14 14 -0.3080 5.0060 -1.3026 15 1 -0.4538 5.8415 -0.0837 16 1 -1.5145 5.1589 -2.1547 17 1 -0.1559 3.5816 -0.9111 18 6 3.9449 2.7576 0.6341 19 6 2.9818 3.3645 1.6539 20 6 3.5522 4.7016 2.1398 21 8 4.8713 4.4960 2.6492 22 6 5.8120 4.0316 1.6788 23 6 5.3741 2.6552 1.1658 24 1 -0.3632 0.5137 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 3.3679 1.7817 -2.1894 30 1 5.0451 1.6883 -1.4987 31 1 1.7631 3.7185 -0.5418 32 1 0.2321 6.8925 -3.3606 33 1 2.0114 3.5300 1.1859 34 1 2.8704 2.6861 2.4996 35 1 2.9162 5.1031 2.9287 36 1 3.5889 5.4055 1.3085 37 1 6.7979 3.9523 2.1369 38 1 5.8531 4.7340 0.8463 39 1 5.4093 1.9334 1.9817 40 1 6.0396 2.3336 0.3647 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000367016527.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:48 Heat of formation + Delta-G solvation = -55.682326 kcal Electronic energy + Delta-G solvation = -20853.085381 eV Core-core repulsion = 17862.193275 eV Total energy + Delta-G solvation = -2990.892106 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.53686 -37.78054 -36.08787 -33.42979 -31.13264 -30.95353 -30.77256 -29.59469 -24.70052 -24.25938 -23.33783 -22.54695 -21.96902 -20.67849 -18.26629 -17.38928 -16.42317 -15.89622 -15.64926 -15.34979 -14.90379 -14.55685 -14.22106 -13.90757 -13.58957 -13.10834 -12.96950 -12.55214 -12.40680 -12.23298 -11.98962 -11.76674 -11.26388 -11.16361 -11.10265 -10.92279 -10.86716 -10.60672 -10.33711 -10.04458 -9.93206 -9.78137 -9.48999 -9.08732 -8.88307 -8.78332 -7.20081 -5.74454 -3.08384 3.41259 3.48633 3.50995 3.78158 4.18138 4.63667 4.75397 4.95154 5.05377 5.15812 5.26985 5.31148 5.35367 5.42730 5.45608 5.46451 5.54790 5.62969 5.75240 5.77769 5.83726 5.89893 5.97001 6.01916 6.03316 6.07744 6.18764 6.25787 6.30019 6.45618 6.52953 6.71238 6.79229 6.88187 7.51586 7.62703 8.05780 8.46189 9.27243 9.99600 10.21192 11.43749 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.015079 B = 0.010530 C = 0.007764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.458775 B = 2658.553150 C = 3605.293608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.354 6.354 4 C 0.080 3.920 5 H 0.060 0.940 6 C -0.197 4.197 7 C 0.191 3.809 8 H 0.066 0.934 9 N -0.721 5.721 10 C -0.242 4.242 11 H 0.089 0.911 12 C 0.008 3.992 13 N -0.934 5.934 14 Si 0.871 3.129 15 H -0.284 1.284 16 H -0.292 1.292 17 H -0.266 1.266 18 C -0.102 4.102 19 C -0.123 4.123 20 C 0.060 3.940 21 O -0.390 6.390 22 C 0.064 3.936 23 C -0.123 4.123 24 H 0.061 0.939 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.044 0.956 28 H 0.041 0.959 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.371 0.629 32 H 0.259 0.741 33 H 0.082 0.918 34 H 0.057 0.943 35 H 0.086 0.914 36 H 0.065 0.935 37 H 0.088 0.912 38 H 0.055 0.945 39 H 0.067 0.933 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.805 -12.065 9.759 16.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.017 4.017 3 O -0.273 6.273 4 C 0.022 3.978 5 H 0.077 0.923 6 C -0.239 4.239 7 C 0.078 3.922 8 H 0.084 0.916 9 N -0.363 5.363 10 C -0.372 4.372 11 H 0.107 0.893 12 C -0.188 4.188 13 N -0.582 5.582 14 Si 0.701 3.299 15 H -0.211 1.211 16 H -0.219 1.219 17 H -0.192 1.192 18 C -0.104 4.104 19 C -0.161 4.161 20 C -0.016 4.016 21 O -0.309 6.309 22 C -0.012 4.012 23 C -0.161 4.161 24 H 0.080 0.920 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.207 0.793 32 H 0.069 0.931 33 H 0.101 0.899 34 H 0.076 0.924 35 H 0.104 0.896 36 H 0.083 0.917 37 H 0.106 0.894 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.719 -11.666 9.750 16.244 hybrid contribution -1.160 -0.809 0.164 1.424 sum 4.559 -12.475 9.913 16.574 Atomic orbital electron populations 1.21741 0.94126 1.01657 1.03412 1.22420 0.95355 0.84564 0.99326 1.87957 1.19738 1.25123 1.94479 1.22935 0.81418 0.96136 0.97339 0.92251 1.24345 0.99768 1.01952 0.97790 1.20890 0.89744 0.91238 0.90292 0.91620 1.42574 1.04193 1.44650 1.44863 1.19089 0.95870 1.10645 1.11600 0.89304 1.24609 0.97109 0.98439 0.98646 1.69696 1.24181 1.29401 1.34884 0.86706 0.84054 0.79236 0.79879 1.21071 1.21877 1.19166 1.22394 0.94671 0.96336 0.97007 1.21763 0.99867 0.96750 0.97682 1.22639 0.82807 0.96814 0.99353 1.87808 1.19857 1.86725 1.36526 1.22517 0.92140 0.94081 0.92506 1.21847 0.94964 0.98602 1.00680 0.92028 0.91632 0.91522 0.93746 0.94030 0.90606 0.90550 0.79275 0.93124 0.89917 0.92401 0.89629 0.91668 0.89396 0.92674 0.91404 0.90704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 10.28 37.16 0.38 -1.59 16 2 C 0.06 0.83 6.51 37.16 0.24 1.07 16 3 O -0.35 -6.22 8.03 -35.23 -0.28 -6.50 16 4 C 0.08 1.27 3.80 -26.12 -0.10 1.17 16 5 H 0.06 0.81 7.85 -51.93 -0.41 0.40 16 6 C -0.20 -3.37 7.36 -25.84 -0.19 -3.56 16 7 C 0.19 3.69 3.81 -67.31 -0.26 3.44 16 8 H 0.07 1.29 7.62 -51.93 -0.40 0.90 16 9 N -0.72 -17.14 4.52 -52.82 -0.24 -17.38 16 10 C -0.24 -6.82 10.46 -15.06 -0.16 -6.98 16 11 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 12 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 13 N -0.93 -29.48 13.97 55.49 0.78 -28.71 16 14 Si 0.87 22.41 27.74 -169.99 -4.71 17.69 16 15 H -0.28 -7.22 7.11 56.52 0.40 -6.81 16 16 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 17 H -0.27 -6.60 6.52 56.52 0.37 -6.23 16 18 C -0.10 -1.64 0.71 -154.35 -0.11 -1.75 16 19 C -0.12 -2.08 4.64 -26.68 -0.12 -2.21 16 20 C 0.06 1.01 6.78 37.30 0.25 1.26 16 21 O -0.39 -6.26 10.72 -35.23 -0.38 -6.64 16 22 C 0.06 0.88 6.78 37.30 0.25 1.13 16 23 C -0.12 -1.61 5.24 -26.68 -0.14 -1.75 16 24 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.04 0.58 8.14 -51.92 -0.42 0.16 16 28 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 30 H 0.08 1.09 7.65 -51.93 -0.40 0.70 16 31 H 0.37 8.92 2.85 -40.82 -0.12 8.80 16 32 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 33 H 0.08 1.61 5.53 -51.93 -0.29 1.32 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.07 1.22 8.12 -51.93 -0.42 0.80 16 37 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.05 0.79 7.68 -51.93 -0.40 0.39 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.07 0.86 7.35 -51.93 -0.38 0.48 16 LS Contribution 310.01 15.07 4.67 4.67 Total: -1.00 -31.64 310.01 -6.84 -38.47 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -6.62 Total: 8.03 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: -0.04 Total: -9.64 kcal Atomic # 7 Polarization: -46.62 SS G_CDS: 0.54 Total: -46.08 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: -0.66 Total: -13.14 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.71 Total: 17.69 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.64 -6.84 -38.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367016527.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.211 kcal (2) G-P(sol) polarization free energy of solvation -31.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds