Wall clock time and date at job start Mon Mar 30 2020 04:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47232 * 2 1 4 4 C 1.42902 * 114.00087 * 180.02562 * 3 2 1 5 5 H 1.08999 * 112.86734 * 338.24131 * 4 3 2 6 6 C 1.53856 * 113.63592 * 109.51034 * 4 3 2 7 7 C 1.53863 * 87.16699 * 89.41857 * 6 4 3 8 8 H 1.09005 * 113.63844 * 139.68919 * 7 6 4 9 9 N 1.46498 * 113.63539 * 270.57916 * 7 6 4 10 10 C 1.36943 * 119.99752 * 255.21482 * 9 7 6 11 11 H 1.08002 * 119.99793 * 0.27665 * 10 9 7 12 12 C 1.38811 * 120.00012 * 180.27737 * 10 9 7 13 13 N 1.31611 * 120.00081 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 119.99814 * 0.02562 * 12 10 9 15 15 H 1.48501 * 109.47483 * 90.00178 * 14 12 10 16 16 H 1.48498 * 109.47011 * 210.00042 * 14 12 10 17 17 H 1.48502 * 109.47495 * 329.99664 * 14 12 10 18 18 C 1.53311 * 113.63232 * 206.86641 * 4 3 2 19 19 C 1.52830 * 113.64384 * 25.43806 * 18 4 3 20 20 C 1.53270 * 108.87454 * 184.13519 * 19 18 4 21 21 O 1.42894 * 109.33155 * 304.68231 * 20 19 18 22 22 C 1.42907 * 114.35319 * 62.99623 * 21 20 19 23 23 C 1.52831 * 113.63361 * 155.89142 * 18 4 3 24 24 H 1.09003 * 109.46419 * 299.99188 * 1 2 3 25 25 H 1.08994 * 109.47622 * 59.99477 * 1 2 3 26 26 H 1.09007 * 109.46923 * 179.97438 * 1 2 3 27 27 H 1.09009 * 109.47071 * 240.00651 * 2 1 3 28 28 H 1.08994 * 109.47622 * 120.00523 * 2 1 3 29 29 H 1.09002 * 113.60258 * 334.84890 * 6 4 3 30 30 H 1.09001 * 113.67303 * 204.00046 * 6 4 3 31 31 H 0.97001 * 120.00384 * 75.49837 * 9 7 6 32 32 H 0.97008 * 120.00329 * 179.97438 * 13 12 10 33 33 H 1.09002 * 109.56564 * 303.94491 * 19 18 4 34 34 H 1.08991 * 109.57130 * 64.31309 * 19 18 4 35 35 H 1.08997 * 109.49494 * 184.73167 * 20 19 18 36 36 H 1.08993 * 109.52104 * 64.65297 * 20 19 18 37 37 H 1.08999 * 109.49487 * 177.05112 * 22 21 20 38 38 H 1.09004 * 109.51336 * 56.97762 * 22 21 20 39 39 H 1.08996 * 109.56935 * 295.67761 * 23 18 4 40 40 H 1.08997 * 109.57338 * 55.92769 * 23 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9270 0.5636 0.3714 6 6 4.0081 1.9783 -1.3293 7 6 3.8510 3.3975 -0.7560 8 1 4.6849 4.0587 -0.9915 9 7 2.5471 4.0033 -1.0369 10 6 2.4361 4.9760 -1.9944 11 1 3.3090 5.2933 -2.5456 12 6 1.2016 5.5542 -2.2565 13 7 1.0948 6.4887 -3.1771 14 14 -0.3080 5.0060 -1.3026 15 1 -0.4538 5.8415 -0.0837 16 1 -1.5145 5.1589 -2.1547 17 1 -0.1559 3.5816 -0.9111 18 6 3.9449 2.7576 0.6341 19 6 2.9818 3.3645 1.6539 20 6 3.5522 4.7016 2.1398 21 8 4.8713 4.4960 2.6492 22 6 5.8120 4.0316 1.6788 23 6 5.3741 2.6552 1.1658 24 1 -0.3632 0.5137 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 3.3679 1.7817 -2.1894 30 1 5.0451 1.6883 -1.4987 31 1 1.7631 3.7185 -0.5418 32 1 0.2321 6.8925 -3.3606 33 1 2.0114 3.5300 1.1859 34 1 2.8704 2.6861 2.4996 35 1 2.9162 5.1031 2.9287 36 1 3.5889 5.4055 1.3085 37 1 6.7979 3.9523 2.1369 38 1 5.8531 4.7340 0.8463 39 1 5.4093 1.9334 1.9817 40 1 6.0396 2.3336 0.3647 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000367016527.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:47 Heat of formation + Delta-G solvation = -77.106374 kcal Electronic energy + Delta-G solvation = -20854.014398 eV Core-core repulsion = 17862.193275 eV Total energy + Delta-G solvation = -2991.821123 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.85414 -38.99766 -37.41433 -35.38029 -32.87349 -32.17787 -32.10232 -30.96847 -26.44614 -25.63456 -24.51195 -23.70794 -23.59462 -21.99040 -20.15154 -18.94932 -17.63503 -17.26134 -16.89788 -16.63160 -16.44706 -16.02431 -15.80201 -15.19278 -15.10297 -14.56999 -14.35038 -14.28505 -13.56635 -13.44449 -13.36186 -13.13442 -13.00486 -12.78483 -12.30432 -12.27983 -12.19921 -12.08596 -11.97820 -11.83291 -11.41151 -11.29686 -11.03743 -10.82674 -10.37121 -10.06337 -9.23129 -8.03336 -5.32721 1.34087 1.35905 1.45870 2.46508 2.64588 3.00702 3.26701 3.40559 3.69952 3.82167 4.00724 4.03917 4.15884 4.19626 4.22481 4.25283 4.37649 4.44241 4.49798 4.57931 4.64588 4.72572 4.78626 4.84592 4.88301 4.96580 5.01262 5.03227 5.15130 5.19770 5.23726 5.33030 5.38774 5.50777 5.79479 6.22504 6.30184 6.49741 7.10547 7.91038 8.10328 9.18548 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.015079 B = 0.010530 C = 0.007764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.458775 B = 2658.553150 C = 3605.293608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.053 3.947 3 O -0.388 6.388 4 C 0.087 3.913 5 H 0.096 0.904 6 C -0.189 4.189 7 C 0.164 3.836 8 H 0.053 0.947 9 N -0.726 5.726 10 C -0.221 4.221 11 H 0.057 0.943 12 C -0.059 4.059 13 N -0.983 5.983 14 Si 0.938 3.062 15 H -0.278 1.278 16 H -0.297 1.297 17 H -0.254 1.254 18 C -0.091 4.091 19 C -0.120 4.120 20 C 0.064 3.936 21 O -0.396 6.396 22 C 0.056 3.944 23 C -0.116 4.116 24 H 0.056 0.944 25 H 0.039 0.961 26 H 0.097 0.903 27 H 0.050 0.950 28 H 0.068 0.932 29 H 0.046 0.954 30 H 0.110 0.890 31 H 0.372 0.628 32 H 0.256 0.744 33 H 0.054 0.946 34 H 0.075 0.925 35 H 0.097 0.903 36 H 0.033 0.967 37 H 0.121 0.879 38 H 0.038 0.962 39 H 0.091 0.909 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.785 -14.916 12.015 20.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.023 4.023 3 O -0.307 6.307 4 C 0.029 3.971 5 H 0.114 0.886 6 C -0.230 4.230 7 C 0.054 3.946 8 H 0.071 0.929 9 N -0.368 5.368 10 C -0.352 4.352 11 H 0.075 0.925 12 C -0.250 4.250 13 N -0.634 5.634 14 Si 0.766 3.234 15 H -0.204 1.204 16 H -0.223 1.223 17 H -0.179 1.179 18 C -0.092 4.092 19 C -0.158 4.158 20 C -0.012 4.012 21 O -0.315 6.315 22 C -0.020 4.020 23 C -0.154 4.154 24 H 0.076 0.924 25 H 0.059 0.941 26 H 0.116 0.884 27 H 0.068 0.932 28 H 0.086 0.914 29 H 0.065 0.935 30 H 0.128 0.872 31 H 0.208 0.792 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.115 0.885 36 H 0.051 0.949 37 H 0.139 0.861 38 H 0.057 0.943 39 H 0.109 0.891 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 6.743 -14.570 12.039 20.067 hybrid contribution -1.323 0.065 -0.561 1.439 sum 5.420 -14.505 11.479 19.275 Atomic orbital electron populations 1.21785 0.93960 1.03261 1.01911 1.22657 0.95610 0.83226 1.00815 1.87932 1.20656 1.27562 1.94547 1.22953 0.81198 0.97206 0.95776 0.88599 1.24267 1.01397 0.99721 0.97574 1.21243 0.87244 0.92172 0.93922 0.92855 1.42514 1.06151 1.44184 1.43958 1.19067 0.94593 1.10512 1.11072 0.92464 1.25312 1.00201 0.99248 1.00271 1.69859 1.24696 1.31522 1.37343 0.85644 0.79994 0.79390 0.78406 1.20420 1.22345 1.17867 1.22355 0.96672 0.95685 0.94535 1.21697 0.98673 0.97154 0.98252 1.22521 0.83807 0.96233 0.98667 1.87804 1.19576 1.86952 1.37175 1.22768 0.93078 0.94083 0.92080 1.21879 0.92839 0.98651 1.01997 0.92448 0.94132 0.88426 0.93167 0.91411 0.93540 0.87174 0.79225 0.93494 0.92721 0.90592 0.88477 0.94867 0.86122 0.94341 0.89085 0.88562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 10.28 71.98 0.74 -2.86 16 2 C 0.05 1.30 6.51 71.98 0.47 1.77 16 3 O -0.39 -12.70 8.03 -148.98 -1.20 -13.90 16 4 C 0.09 2.46 3.80 30.99 0.12 2.57 16 5 H 0.10 2.07 7.85 -2.39 -0.02 2.05 16 6 C -0.19 -6.08 7.36 31.17 0.23 -5.85 16 7 C 0.16 6.28 3.81 45.39 0.17 6.45 16 8 H 0.05 2.13 7.62 -2.38 -0.02 2.11 16 9 N -0.73 -34.98 4.52 -321.04 -1.45 -36.43 16 10 C -0.22 -12.93 10.46 84.03 0.88 -12.05 16 11 H 0.06 3.64 8.06 -2.91 -0.02 3.61 16 12 C -0.06 -3.59 5.50 84.86 0.47 -3.12 16 13 N -0.98 -64.51 13.97 21.65 0.30 -64.20 16 14 Si 0.94 47.75 27.74 68.60 1.90 49.66 16 15 H -0.28 -13.74 7.11 99.48 0.71 -13.04 16 16 H -0.30 -15.20 7.11 99.48 0.71 -14.50 16 17 H -0.25 -12.25 6.52 99.48 0.65 -11.60 16 18 C -0.09 -2.69 0.71 -52.08 -0.04 -2.73 16 19 C -0.12 -3.85 4.64 30.63 0.14 -3.71 16 20 C 0.06 2.10 6.78 72.07 0.49 2.58 16 21 O -0.40 -11.85 10.72 -148.98 -1.60 -13.44 16 22 C 0.06 1.37 6.78 72.07 0.49 1.86 16 23 C -0.12 -2.55 5.24 30.63 0.16 -2.39 16 24 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.10 1.65 8.14 -2.38 -0.02 1.64 16 27 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 28 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.11 2.77 7.65 -2.39 -0.02 2.75 16 31 H 0.37 17.91 2.85 -92.71 -0.26 17.65 16 32 H 0.26 16.07 8.31 -92.70 -0.77 15.30 16 33 H 0.05 2.08 5.53 -2.39 -0.01 2.07 16 34 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.10 2.86 8.14 -2.39 -0.02 2.84 16 36 H 0.03 1.27 8.12 -2.39 -0.02 1.25 16 37 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.04 1.06 7.68 -2.39 -0.02 1.04 16 39 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.10 1.75 7.35 -2.39 -0.02 1.73 16 Total: -1.00 -71.21 310.01 2.96 -68.25 By element: Atomic # 1 Polarization: 26.87 SS G_CDS: 0.69 Total: 27.55 kcal Atomic # 6 Polarization: -21.79 SS G_CDS: 4.32 Total: -17.47 kcal Atomic # 7 Polarization: -99.49 SS G_CDS: -1.15 Total: -100.64 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: -2.79 Total: -27.35 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 1.90 Total: 49.66 kcal Total: -71.21 2.96 -68.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367016527.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.859 kcal (2) G-P(sol) polarization free energy of solvation -71.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds